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Dissertations / Theses on the topic 'Protein unfolding'

Author: Grafiati

Published: 4 June 2021

Last updated: 26 July 2025

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1

Moraitakis, George. "Protein unfolding and disease." Thesis, Birkbeck (University of London), 2002. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.272112.

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2

Causton, Edward William Thomas. "Protein mechanical unfolding in multiple dimensions." Thesis, University of Leeds, 2011. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.535690.

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3

Jakus-Pol, Joanna Ewa. "Pressure perturbation calorimetry of protein unfolding." Thesis, University of Glasgow, 2005. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.412944.

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4

Sadler, David Paul. "Mechanically unfolding variants of protein L." Thesis, University of Leeds, 2007. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.444035.

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5

Krammer, André Thomas. "Computational studies of protein-membrane interactions and forced unfolding of proteins /." Thesis, Connect to this title online; UW restricted, 2000. http://hdl.handle.net/1773/9697.

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6

Zinober-Moore, Rebecca C. "Elasticity and mechanical unfolding of globular protein domains." Thesis, University of Leeds, 2005. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.426849.

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7

Saladino, G. "FREE ENERGIES IN BIOMOLECULAR SIMULATIONS: FROM PROTEIN-PROTEIN INTERACTIONS TO UNFOLDING INHIBITION." Doctoral thesis, Università degli Studi di Milano, 2010. http://hdl.handle.net/2434/150127.

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Part I - Microtubules are polymeric structures formed by the self association of tubulin dimers. They are extremely dynamical structures, that can undergo phases of growing and shrinking, playing a key role during cells proliferation process. Due to its importance for mitosis, tubulin is the target of many anticancer drugs currently in use or under clinical trial. The success of these molecules, however, is limited by the onset of resistant tumor cells during the treatment, so new resistance-proof compounds need to be developed. We analyze the protein-protein interactions allowing microt

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8

Berry, Yoke. "The effect of pulsed electromagnetic fields on protein unfolding." Access electronically, 2005. http://www.library.uow.edu.au/adt-NWU/public/adt-NWU20060713.142625/index.html.

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9

Knaggs, Michael Henry. "Protein unfolding and stability : a computational study of barnase." Thesis, Birkbeck (University of London), 1999. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.325104.

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10

Miriani, M. "PROTEIN UNFOLDING ON INTERFACES: A STRUCTURAL AND FUNCTIONAL STUDY." Doctoral thesis, Università degli Studi di Milano, 2012. http://hdl.handle.net/2434/170496.

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The spontaneous adsorption of protein molecules on interfaces is an ubiquitous phenomenon in natural and man-made systems. The structural rearrangement caused by the direct contact with the sorbent phase may affect protein biological activity, including bioavailability, and ability to bind micro- and macromolecular ligands. Moreover, protein immunoreactivity has been assessed to change if protein molecules interact with an hydrophobic phase; indeed adjuvant are hydrophobic substances that act as enhancers in antibodies production. Whether proteins unfold randomly or through subsequent ordered

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11

Evans, P. A. "NMR studies of the folding and unfolding of proteins." Thesis, University of Oxford, 1986. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.376891.

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12

Kelly, Sharon Mary. "Studies on the unfolding and refolding of oligomeric proteins." Thesis, University of Stirling, 1994. http://hdl.handle.net/1893/21548.

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The unfolding and refolding of a number of oligomeric enzymes have been studied. These were: fumarase from pig heart, the NAD+ -dependent isocitrate dehydrogenase from yeast, the citrate synthases from pig hean, Acinetobacter anitratum and Thermoplasma acidophilum and the chaperone protein GroEL from Escherichia coli. In each case the unfolding by guanidinium chloride (GdnHCI) was monitored by enzyme activity (to detect possible perturbations at the active site), protein fluorescence (to detect changes in tertiary structure) and far U.v. circular dichroism (to detect changes in protein seconda

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13

Sukonina, Valentina. "Angiopoietin-like protein 4 : an unfolding chaperone regulating lipoprotein lipase activity." Doctoral thesis, Umeå : Univ, 2007. http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-1343.

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14

Walsh, Danielle Lauren. "Single molecule studies of protein unfolding in highly saline solutions." Thesis, University of Leeds, 2016. http://etheses.whiterose.ac.uk/13347/.

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Life on earth has been found thriving in a number of extreme environments, including those of high salinity, high and low temperatures and pH, and high pressure. Organisms which live in the presence of large quantities of salt are known as halophilic (meaning salt-loving), such as in the Dead Sea. Proteins are fundamental components of all living organisms. They are large, complex molecules that carry out many processes within a cell. Halophilic proteins are of great interest due to their ability to remain soluble, flexible and functional under highly saline conditions. Intriguingly, these pro

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15

Björk, Grimberg Kristian. "The p97 ATPase and the Drosophila Proteasome : Protein Unfolding and Regulation." Doctoral thesis, Stockholms universitet, Institutionen för molekylärbiologi och funktionsgenomik, 2010. http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-43778.

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For all living systems, there is a requirement to recycle and regulate proteins. In eukaryotic organisms this is accomplished by the proteasome. The p97 ATPase is another highly conserved and essential complex present throughout the eukaryotic cell. In Paper I we utilized UFD fluorescent substrates to address the role of p97 and cofactors in soluble proteasome degradation. Results using RNAi and Drosophila p97 mutants propose p97 to function upstream of the proteasome on cytosolic proteasome targets as an important unfoldase together with its Ufd1/Npl4 cofactors. The results implicate p97 to b

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16

Lu, Hui. "Studies of protein folding and unfolding using NMR and optical methods." Thesis, University of Oxford, 1996. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.337421.

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17

Chen, Wei. "Molecular dynamics simulations of binding, unfolding, and global conformational changes of signaling and adhesion molecules." Diss., Atlanta, Ga. : Georgia Institute of Technology, 2009. http://hdl.handle.net/1853/28118.

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Thesis (M. S.)--Mechanical Engineering, Georgia Institute of Technology, 2009.<br>Committee Chair: Zhu, Cheng; Committee Member: Harvey, Stephen; Committee Member: Hud, Nicholas; Committee Member: Zamir, Evan; Committee Member: Zhu, Ting.

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18

Miller, Colbert. "Protein Folding and Unfolding on the Millisecond Time Scale using Contained-Electrospray Ionization." The Ohio State University, 2016. http://rave.ohiolink.edu/etdc/view?acc_num=osu1469026237.

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19

Zhu, Xiangwei. "Unfolding, crosslinking and co-polymerization of Camelina protein and its use as wood adhesives." Diss., Kansas State University, 2017. http://hdl.handle.net/2097/35420.

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Doctor of Philosophy<br>Department of Grain Science and Industry<br>X. Susan Sun<br>Oilseed protein is a promising renewable source to be used as the replacement of petroleum-based materials for adhesion purpose, and it has drawn increasing attention since soy-based adhesives were developed for wood glues. However, soy protein comprises a portion of humans’ diets, thereby creating competition between utilization of soy protein for protein-based products or human food. Therefore, alternative bio-resources must be discovered. Proteins from camelina sativa provide such potential. Similar to other

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20

West, Daniel Kenneth. "The effects of local dynamics and geometry on protein mechanical unfolding behaviour." Thesis, University of Leeds, 2006. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.432649.

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21

Qureshi, Mohammad Haroon. "Replication Protein A Mediated G-Quadruplex Unfolding - A Single Molecule FRET Study." Kent State University / OhioLINK, 2013. http://rave.ohiolink.edu/etdc/view?acc_num=kent1385984615.

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22

Mandelli, Andrea Paola. "Unfolding the immune response against Staphylococcus aureus-mediated systemic sequelae of skin recurrences." Doctoral thesis, Università di Siena, 2022. http://hdl.handle.net/11365/1203731.

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Staphylococcal protein A (SpA) is a surface-associated virulence factor of Staphylococcus aureus (S. aureus) which binds human immunoglobulins via both Fc and Fab fragment masking the pathogen to the host immune system. This activity interacts with the normal maturation of the host immune system during an infection and allows S. aureus to cause recurrent infections as, for example, skin recurrences. Skin recurrences are not only bothersome superficial infections that require continuous treatments, but may also evolve in more complicated and systemic complications. Immunization with SpA protec

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23

Wright, Thaiesha Andrea. "Advances in Synthesis and Biophysical Analysis of Protein-Polymer Bioconjugates." Miami University / OhioLINK, 2020. http://rave.ohiolink.edu/etdc/view?acc_num=miami1593472633914607.

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24

Kravats, Andrea N. "Coarse grained molecular dynamics simulations of the coupling between the allosteric mechanism of the ClpY nanomachine and threading of a substrate protein." University of Cincinnati / OhioLINK, 2013. http://rave.ohiolink.edu/etdc/view?acc_num=ucin1384849649.

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25

Tonddast-Navaei, Sam M. S. "Mechanism of Substrate Protein Remodeling by Allosteric Motions of AAA+ Nanomachines." University of Cincinnati / OhioLINK, 2014. http://rave.ohiolink.edu/etdc/view?acc_num=ucin1384869946.

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26

Wang, Zijian. "Single-Molecule Spectroscopy And Imaging Studies Of Protein Folding-Unfolding Conformational Dynamics: The Multiple-State And Multiple-Channel Energy Landscape." Bowling Green State University / OhioLINK, 2016. http://rave.ohiolink.edu/etdc/view?acc_num=bgsu1459942296.

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27

Svilenov, Hristo Lyubomirov [Verfasser], and Gerhard [Akademischer Betreuer] Winter. "Formulation of therapeutic proteins : Protein unfolding, refolding, aggregation and long-term storage stability / Hristo Lyubomirov Svilenov ; Betreuer: Gerhard Winter." München : Universitätsbibliothek der Ludwig-Maximilians-Universität, 2019. http://d-nb.info/1215499744/34.

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28

Greviskes, Brian P. "The mechanics of mussel byssal threads : a study in protein unfolding and graded structures." Thesis, Massachusetts Institute of Technology, 2009. http://hdl.handle.net/1721.1/50563.

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Thesis (S.M.)--Massachusetts Institute of Technology, Dept. of Mechanical Engineering, 2009.<br>Includes bibliographical references (leaves 196-198).<br>Natural materials and structures have evolved over millions of years to perform very complex and specific biomechanical functions, and as a result can provide insight into optimal designs for particular properties. Mussel byssal threads, the attachment appendage of aquatic mus-sels, are one example of such structures. These threads protrude from the mussel, connecting the mussel to rocks and other hard surfaces, providing a strong and resilien

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29

Brunetti, Lucia. "Molecular dynamics of novel [beta]-peptidic foldamers and of Ph-dependent protein folding/unfolding." Doctoral thesis, Università Politecnica delle Marche, 2010. http://hdl.handle.net/11566/242179.

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30

Merstorf, Céline. "Stabilité conformationnelle et dépliement de la protéine MalE : Étude par nanopore et par spectroscopie RMN." Thesis, Cergy-Pontoise, 2011. http://www.theses.fr/2011CERG0571/document.

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Nous avons étudié le couplage dépliement-transport de la Maltose Binding Protein (MBP ou MalE), une protéine périplasmique d'E. Coli et d'un mutant instable, le MalE219, en fonction de la concentration d'un agent dénaturant, le chlorure de guanidium (GdnHCl) à l'échelle de la molécule unique. La technique utilisée est basée sur la détection électrique du transport de macromolécules à travers un nanopore protéique (l'Aérolysine d'Aeromonas Hydrophila) inséré dans une bicouche lipidique plane. Les résultats obtenus ont été comparés à ceux obtenus lors d'une précédente étude réalisée à travers un

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31

Smith, Nathan B. "Computational Studies of Protein Folding Assistance and Conformational Pathways of Biological Nanomachines." University of Cincinnati / OhioLINK, 2015. http://rave.ohiolink.edu/etdc/view?acc_num=ucin1448037580.

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32

Sukumaran, Suja. "Spectroscopic investigation of stability, unfolding and refolding of outer membrane protein porin from Paracoccus denitrificans." [S.l. : s.n.], 2004. http://deposit.ddb.de/cgi-bin/dokserv?idn=974953849.

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33

Sharma, Shruti. "Unfolding and compaction in chaperonin-assisted protein folding followed by single molecule and ensemble FRET." Diss., lmu, 2007. http://nbn-resolving.de/urn:nbn:de:bvb:19-76225.

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34

Lindgren, Matteus. "On the mechanism of Urea-induced protein denaturation." Doctoral thesis, Umeå universitet, Kemiska institutionen, 2010. http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-33151.

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It is well known that folded proteins in water are destabilized by the addition of urea. When a protein loses its ability to perform its biological activity due to a change in its structure, it is said to denaturate. The mechanism by which urea denatures proteins has been thoroughly studied in the past but no proposed mechanism has yet been widely accepted. The topic of this thesis is the study of the mechanism of urea-induced protein denaturation, by means of Molecular Dynamics (MD) computer simulations and Nuclear Magnetic Resonance (NMR) spectroscopy. Paper I takes a thermodynamic approach

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35

Wang, Huan Ph D. "Elucidating Allosteric Mechanisms of the AAA+ ClpATPases Using Molecular Dynamics Simulations." University of Cincinnati / OhioLINK, 2015. http://rave.ohiolink.edu/etdc/view?acc_num=ucin1439296238.

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36

Leinartaité, Lina. "Zinc in folding and misfolding of SOD1 : Implications for ALS." Doctoral thesis, Stockholms universitet, Institutionen för biokemi och biofysik, 2014. http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-107543.

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Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disease causing degeneration of upper and lower motor neurons. Most ALS cases are sporadic; only 6% are associated with mutations in Cu, Zn superoxide dismutase (SOD1). It is believed, however, that sporadic and familiar forms of ALS share a common mechanism, where SOD1 plays an important role: SOD1 knockout mice do not develop ALS, whereas the overexpression of human SOD1 in mice produces ALS-like symptoms. Increasing evidence suggest that the SOD1 structure gains cytotoxic properties, but detailed description of the toxic species is

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37

Javidialesaadi, Abdolreza. "Computer Simulations of Titin I27 and Knotted Protein Remodeling by Clp Biological Nanomachines." University of Cincinnati / OhioLINK, 2018. http://rave.ohiolink.edu/etdc/view?acc_num=ucin1523628577990709.

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38

Neveling, Lauren Leigh. "Probing the kinetics of unfolding and aggregation of human gamma-D crystallin at low PH using Fourier transform infrared spectroscopy /." Connect to online version, 2007. http://ada.mtholyoke.edu/setr/websrc/pdfs/www/2007/212.pdf.

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39

Tan, Yi Lei. "Structural and Biophysical Characterisation of Denatured States and Reversible Unfolding of Sensory Rhodopsin II." Thesis, University of Cambridge, 2019. https://www.repository.cam.ac.uk/handle/1810/289718.

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Our understanding of the folding of membrane proteins lags behind that of soluble proteins due to the challenges posed by the exposure of hydrophobic regions during in vitro chemical denaturation and refolding experiments. While different folding models are accepted for soluble proteins, only the two-stage model and the long-range interactions model have been proposed so far for helical membrane proteins. To address our knowledge gap on how different membrane proteins traverse their folding landscapes, Chapter 2 investigates the structural features of SDS-denatured states and the kinetics for

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40

LIMA, Sandro Vagner de. "Investigação de sistemas e processos biológicos pela técnica de espectroscopia de impedância elétrica." Universidade Federal de Pernambuco, 2015. https://repositorio.ufpe.br/handle/123456789/17146.

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Submitted by Fabio Sobreira Campos da Costa (fabio.sobreira@ufpe.br) on 2016-06-27T12:24:48Z No. of bitstreams: 2 license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5) Tese _Sandro Vagner de Lima.pdf: 6041788 bytes, checksum: 30432ac952cb4559dfe9e27b22cd9bf5 (MD5)<br>Made available in DSpace on 2016-06-27T12:24:49Z (GMT). No. of bitstreams: 2 license_rdf: 1232 bytes, checksum: 66e71c371cc565284e70f40736c94386 (MD5) Tese _Sandro Vagner de Lima.pdf: 6041788 bytes, checksum: 30432ac952cb4559dfe9e27b22cd9bf5 (MD5) Previous issue date: 2015-10-08<br>Esta tese de doutorado foi

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41

Hotchko, Matthew John. "Automated extraction of backbone deuteration levels from amide H/²H mass spectrometry experiments to understand EX1 protein unfolding and determine protein binding interfaces /." Diss., Connect to a 24 p. preview or request complete full text in PDF formate. Access restricted to UC campuses, 2006. http://wwwlib.umi.com/cr/ucsd/fullcit?p3244176.

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42

Kracht, Matthias [Verfasser], and Hemmo [Akademischer Betreuer] Meyer. "Molecular function of SEP domain adapters in VCP/p97 mediated protein unfolding / Matthias Kracht ; Betreuer: Hemmo Meyer." Duisburg, 2021. http://d-nb.info/1238016820/34.

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43

Krüger, Georg Ernst Heinrich [Verfasser]. "Dissecting the Mechanism of Protein Unfolding by the Unfoldase PAN using Structural Biology / Georg Ernst Heinrich Krüger." Hannover : Gottfried Wilhelm Leibniz Universität, 2021. http://d-nb.info/1238222374/34.

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44

Manyusa, Susan. "The cytochrome bâ‚… fold : equilibrium and kinetic studies of folding and unfolding reactions in wild type, apo and variant proteins." Thesis, Queen Mary, University of London, 1999. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.324916.

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45

Houts, Frederick William. "Analysis of Methoxy-polyethylene Glycol-modified Human Serum Albumin." University of Toledo Health Science Campus / OhioLINK, 2006. http://rave.ohiolink.edu/etdc/view?acc_num=mco1149010508.

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46

Theisen, Kelly E. "Exploring the mechanical properties of filamentous proteins and their homologs by multiscale simulations." University of Cincinnati / OhioLINK, 2013. http://rave.ohiolink.edu/etdc/view?acc_num=ucin1384850483.

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47

Swanson, Eric C. "Higher-Order Unfolding of Peri/Centric Satellite Heterochromatin is an Early and Consistent Event in Cell Senescence: A Dissertation." eScholarship@UMMS, 2014. https://escholarship.umassmed.edu/gsbs_diss/765.

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Cellular senescence is thought to play an essential role in many biological functions including tumor suppression and organismal aging. Senescent cells, which are permanently removed from the cell cycle, can be found both in vivo in many different tissue types and in vitro within cultures of non-immortalized cells. Despite their inability to proliferate, these cells persist and remain metabolically active for indefinite periods of time. This physiologic process occurs in response to a variety of cellular insults including oxidative stress, shortened telomeres, constitutive oncogene expression,

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48

Swanson, Eric C. "Higher-Order Unfolding of Peri/Centric Satellite Heterochromatin is an Early and Consistent Event in Cell Senescence: A Dissertation." eScholarship@UMMS, 2012. http://escholarship.umassmed.edu/gsbs_diss/765.

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Cellular senescence is thought to play an essential role in many biological functions including tumor suppression and organismal aging. Senescent cells, which are permanently removed from the cell cycle, can be found both in vivo in many different tissue types and in vitro within cultures of non-immortalized cells. Despite their inability to proliferate, these cells persist and remain metabolically active for indefinite periods of time. This physiologic process occurs in response to a variety of cellular insults including oxidative stress, shortened telomeres, constitutive oncogene expression,

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49

Kosinski-Collins, Melissa Sue 1978. "Characterization of the unfolding, refolding, and aggregation pathways of two protein implicated in cataractogenesis : human gamma D and human gamma S crystallin." Thesis, Massachusetts Institute of Technology, 2005. http://hdl.handle.net/1721.1/28672.

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Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Biology, 2005.<br>Includes bibliographical references.<br>Human [gamma]D crystallin (H[gamma]D-Crys) and human [gamma]S crystallin (H[gamma]S-Crys), are major proteins of the human eye lens and are components of cataracts. H[gamma]D-Crys is expressed early in life in the lens cortex while H[gamma]S-Crys is expressed throughout life in the lens epithelial cells. Both are primarily β-sheet proteins made up of four Greek keys separated into two domains and display 69% sequence similarity. The unfolding and refolding of H[gamma]D-Cry

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50

Brorsson, Ann-Christin. "The Folding Energy Landscape of MerP." Doctoral thesis, Umeå : Department of Biochemistry, Umeå University, 2004. http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-309.

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