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Relevant bibliographies by topics / Proteins crystal structure

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Academic literature on the topic 'Proteins crystal structure'

Author: Grafiati

Published: 4 June 2021

Last updated: 10 February 2022

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Journal articles on the topic "Proteins crystal structure"

1

Banerjee, Sanchari, Nathan P. Coussens, François-Xavier Gallat, et al. "Structure of a heterogeneous, glycosylated, lipid-bound,in vivo-grown protein crystal at atomic resolution from the viviparous cockroachDiploptera punctata." IUCrJ 3, no. 4 (2016): 282–93. http://dx.doi.org/10.1107/s2052252516008903.

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Macromolecular crystals for X-ray diffraction studies are typically grownin vitrofrom pure and homogeneous samples; however, there are examples of protein crystals that have been identifiedin vivo. Recent developments in micro-crystallography techniques and the advent of X-ray free-electron lasers have allowed the determination of several protein structures from crystals grownin cellulo. Here, an atomic resolution (1.2 Å) crystal structure is reported of heterogeneous milk proteins grown inside a living organism in their functional niche. Thesein vivo-grown crystals were isolated from the midg

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Tarique, K. F., S. Devi, S. A. Abdul Rehman, and S. Gourinath. "Crystal structure of HINT fromHelicobacter pylori." Acta Crystallographica Section F Structural Biology Communications 72, no. 1 (2016): 42–48. http://dx.doi.org/10.1107/s2053230x15023316.

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Proteins belonging to the histidine triad (HIT) superfamily bind nucleotides and use the histidine triad motif to carry out dinucleotidyl hydrolase, nucleotidyltransferase and phosphoramidite hydrolase activities. Five different branches of this superfamily are known to exist. Defects in these proteins in humans are linked to many diseases such as ataxia, diseases of RNA metabolism and cell-cycle regulation, and various types of cancer. The histidine triad nucleotide protein (HINT) is nearly identical to proteins that have been classified as protein kinase C-interacting proteins (PKCIs), which

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Priestle, John P. "Improved dihedral-angle restraints for protein structure refinement." Journal of Applied Crystallography 36, no. 1 (2003): 34–42. http://dx.doi.org/10.1107/s0021889802018265.

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Because of the relatively low-resolution diffraction of typical protein crystals, structure refinement is usually carried out employing stereochemical restraints to increase the effective number of observations. Well defined values for bond lengths and angles are available from small-molecule crystal structures. Such values do not exist for dihedral angles because of the concern that the strong crystal contacts in small-molecule crystal structures could distort the dihedral angles. This paper examines the dihedral-angle distributions in ultra-high-resolution protein structures (1.2 Å or better

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Sprenger, Janina, Jannette Carey, Alexander Schulz, et al. "Guest-protein incorporation into solvent channels of a protein host crystal (hostal)." Acta Crystallographica Section D Structural Biology 77, no. 4 (2021): 471–85. http://dx.doi.org/10.1107/s2059798321001078.

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Soaking small molecules into the solvent channels of protein crystals is the most common method of obtaining crystalline complexes with ligands such as substrates or inhibitors. The solvent channels of some protein crystals are large enough to allow the incorporation of macromolecules, but soaking of protein guests into protein crystals has not been reported. Such protein host crystals (here given the name hostals) incorporating guest proteins may be useful for a wide range of applications in biotechnology, for example as cargo systems or for diffraction studies analogous to the crystal sponge

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Nguyen, Van Dat, Ekaterina Biterova, Mikko Salin, Rik K. Wierenga, and Lloyd W. Ruddock. "Crystal structure of human anterior gradient protein 3." Acta Crystallographica Section F Structural Biology Communications 74, no. 7 (2018): 425–30. http://dx.doi.org/10.1107/s2053230x18009093.

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Oxidative protein folding in the endoplasmic reticulum is catalyzed by the protein disulfide isomerase family of proteins. Of the 20 recognized human family members, the structures of eight have been deposited in the PDB along with domains from six more. Three members of this family, ERp18, anterior gradient protein 2 (AGR2) and anterior gradient protein 3 (AGR3), are single-domain proteins which share sequence similarity. While ERp18 has a canonical active-site motif and is involved in native disulfide-bond formation, AGR2 and AGR3 lack elements of the active-site motif found in other family

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Conrad, Chelsie E., Shibom Basu, Daniel James, et al. "A novel inert crystal delivery medium for serial femtosecond crystallography." IUCrJ 2, no. 4 (2015): 421–30. http://dx.doi.org/10.1107/s2052252515009811.

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Serial femtosecond crystallography (SFX) has opened a new era in crystallography by permitting nearly damage-free, room-temperature structure determination of challenging proteins such as membrane proteins. In SFX, femtosecond X-ray free-electron laser pulses produce diffraction snapshots from nanocrystals and microcrystals delivered in a liquid jet, which leads to high protein consumption. A slow-moving stream of agarose has been developed as a new crystal delivery medium for SFX. It has low background scattering, is compatible with both soluble and membrane proteins, and can deliver the prot

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Melville, Zephan, Ehson Aligholizadeh, Laura E. McKnight, Dylan J. Weber, Edwin Pozharski, and David J. Weber. "X-ray crystal structure of human calcium-bound S100A1." Acta Crystallographica Section F Structural Biology Communications 73, no. 4 (2017): 215–21. http://dx.doi.org/10.1107/s2053230x17003983.

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S100A1 is a member of the S100 family of Ca2+-binding proteins and regulates several cellular processes, including those involved in Ca2+signaling and cardiac and skeletal muscle function. In Alzheimer's disease, brain S100A1 is overexpressed and gives rise to disease pathologies, making it a potential therapeutic target. The 2.25 Å resolution crystal structure of Ca2+-S100A1 is solved here and is compared with the structures of other S100 proteins, most notably S100B, which is a highly homologous S100-family member that is implicated in the progression of malignant melanoma. The observed stru

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HARATA, Kazuaki. "Crystal Structure as a Snapshot of Dynamic Structure of Proteins." Nihon Kessho Gakkaishi 36, no. 4 (1994): 270–75. http://dx.doi.org/10.5940/jcrsj.36.270.

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Jung, James, Ghader Bashiri, Jodie Johnston, Alistair Brown, David Ackerley, and Edward Baker. "Crystal structure of M. tuberculosis phosphopantetheinyl transferase PptT." Acta Crystallographica Section A Foundations and Advances 70, a1 (2014): C815. http://dx.doi.org/10.1107/s2053273314091840.

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Phosphopantetheinyl transferases (PPTases) are essential enzymes that catalyze covalent attachment of the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to a conserved serine residue on acyl (ACP) and peptidyl carrier proteins (PCP) [1]. This post-translational modification converts the inactive apo-carrier proteins to the functional form, shuttling the intermediates of biosynthetic reactions catalyzed by fatty acid synthases (FAS), polyketide synthases (PKS) and non-ribosomal peptide synthetases (NRPSs). In Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis (TB)

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Zhang, Fajun, Georg Zocher, Andrea Sauter, Thilo Stehle, and Frank Schreiber. "Novel approach to controlled protein crystallization through ligandation of yttrium cations." Journal of Applied Crystallography 44, no. 4 (2011): 755–62. http://dx.doi.org/10.1107/s0021889811017997.

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Crystal structure determination of macromolecules is often hampered by the lack of crystals suitable for diffraction experiments. This article describes a protocol to crystallize the acidic protein bovine β-lactoglobulin in the presence of yttrium to yield high-quality crystals that belong to a new space group. The yttrium ions not only are used to engineer the crystallization, but are an integral part of the crystal lattice and can therefore be used to solve the phase problem using anomalous dispersion methods. Protein crystallization conditions were first optimized using an experimental phas

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Dissertations / Theses on the topic "Proteins crystal structure"

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Sadow, Jennifer Beth Hurley. "The X-ray crystal structure of wheat translation initiation factor eIF4E /." Thesis, Full text (PDF) from UMI/Dissertation Abstracts International, 2002. http://wwwlib.umi.com/cr/utexas/fullcit?p3085056.

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Zuccola, Harmon Jay. "The crystal structure of monoferric human serum transferrin." Diss., Georgia Institute of Technology, 1992. http://hdl.handle.net/1853/26304.

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Carmel, Andrew Barry. "Crystal structure of BstDEAD, a novel DEAD-box protein from Bacillus stearothermophilus /." view abstract or download file of text, 2003. http://wwwlib.umi.com/cr/uoregon/fullcit?p3095239.

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Thesis (Ph. D.)--University of Oregon, 2003.<br>Typescript. Includes vita and abstract. Includes bibliographical references (leaves 101-114). Also available for download via the World Wide Web; free to University of Oregon users.

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Hoang, Quyen Quoc Yang Daniel. "Crystal structure and hydroxyapatite binding of porcine osteocalcin /." *McMaster only, 2003.

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Li, Xuchu. "Crystal structure of the kelch domain of human keap1." Diss., Columbia, Mo. : University of Missouri-Columbia, 2005. http://hdl.handle.net/10355/5828.

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Thesis (Ph. D.)--University of Missouri-Columbia, 2005.<br>The entire dissertation/thesis text is included in the research.pdf file; the official abstract appears in the short.pdf file (which also appears in the research.pdf); a non-technical general description, or public abstract, appears in the public.pdf file. Vita. Includes bibliographical references.

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Badger, J. "X-ray crystallographic studies of cubic insulin and of the ribosomal proteins L30 and S5." Thesis, University of York, 1986. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.483027.

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Herman, Moreno Maria Dolores. "Structural studies of proteins in apoptosis and lipid signaling." Doctoral thesis, Stockholms universitet, Institutionen för biokemi och biofysik, 2008. http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-8212.

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Signaling pathways control the fate of the cell. For example, they promote cell survival or commit the cell to death (apoptosis) in response to cell injury or developmental stimuli, decisions, which are vital for the proper development and functioning of metazoan. Tight control of such pathways is essential; dysregulation of apoptosis can disrupt the delicate balance between cell proliferation and cell death ending up in pathological processes, including cancer, autoimmunity diseases, inflammatory diseases, or degenerative disorders. We have used a structural genomic approach to study the stru

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Isaza, Clara Eugenia. "Biochemical and structural characterization of novel metalloprotein sensors and carboxypeptidases." Connect to resource, 2005. http://rave.ohiolink.edu/etdc/view?acc%5Fnum=osu1117548268.

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Thesis (Ph. D.)--Ohio State University, 2005.<br>Title from first page of PDF file. Document formatted into pages; contains xi, 98 p.; also includes graphics. Includes bibliographical references (p. 93-98). Available online via OhioLINK's ETD Center

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Galius, Veniamin. "Automated assignment of amide resonances in NMR spectra of proteins with known crystal structure /." [S.l.] : [s.n.], 2008. http://e-collection.ethbib.ethz.ch/show?type=diss&nr=18043.

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Delarbre, Laure. "The crystal structure of Azotobacter vinelandii ModG provides insights into the mechanism and specificity of molybdate binding." Thesis, University of East Anglia, 2001. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.364998.

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Books on the topic "Proteins crystal structure"

1

Crystallography made crystal clear. 3rd ed. Academic Press, 2006.

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International Conference on Protein Crystal Growth (1st 1985 Stanford University). Protein crystal growth: Proceedings of the first International Conference on Protein Crystal Growth, Stanford University, Stanford CA, USA, 14-16 August 1985. North-Holland, 1986.

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Rhodes, Gale. Crystallography made crystal clear: A guide for users of macromolecular models. 3rd ed. Elsevier/Academic Press, 2006.

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Rhodes, Gale. Crystallography made crystal clear: A guide for users of macromolecular models. Academic Press, 1993.

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Rhodes, Gale. Crystallography made crystal clear: A guide for users of macromolecular models. 3rd ed. Elsevier/Academic Press, 2007.

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6

Sherwood, Dennis. Crystals, X-rays, and proteins: Comprehensive protein crystallography. Oxford University Press, 2011.

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Rosenberger, F. Convective flow effects on protein crystal growth: First semi-annual progress report, NASA grant NAG8-950, period of performance 2/1/93 through 7/31/93. Center for Microgravity and Materials Research, University of Alabama in Huntsville, 1993.

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8

Crichton, Michael. Three Complete Novels: The Andromeda Strain / The Terminal Man / The Great Train Robbery. Wings Books, 1993.

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Crichton, Michael. Tian wai si jun. Bo Yi, 1995.

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Crichton, Michael. The Andromeda Strain. Ballantine Books, 1999.

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Book chapters on the topic "Proteins crystal structure"

1

Hargittai, István. "Linus Pauling’s Quest for the Structure of Proteins." In Science of Crystal Structures. Springer International Publishing, 2015. http://dx.doi.org/10.1007/978-3-319-19827-9_13.

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Bourne, Yves, Palmer Taylor, Joan R. Kanter, Pierre E. Bougis, and Pascale Marchot. "Crystal Structure of Mouse Acetylcholinesterase." In Structure and Function of Cholinesterases and Related Proteins. Springer US, 1998. http://dx.doi.org/10.1007/978-1-4899-1540-5_91.

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Raves, Mia L., Harry M. Greenblatt, Gitay Kryger, et al. "Alternative Crystal Forms of Torpedo Californica Acetylcholinesterase." In Structure and Function of Cholinesterases and Related Proteins. Springer US, 1998. http://dx.doi.org/10.1007/978-1-4899-1540-5_104.

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Müller, Christoph W., Montserrat Soler-Lopez, Christina Gewinner, and Bernd Groner. "X-Ray Crystal Structure of STAT Proteins and Structure-Activity Relationships." In Signal Transducers and Activators of Transcription (STATs). Springer Netherlands, 2003. http://dx.doi.org/10.1007/978-94-017-3000-6_21.

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Hammond, P., C. Kern, Y. P. Pang, and S. Brimijoin. "Improved Acetylcholinesterase Reactivation with Bis-Oximes Modeled on Crystal Structure." In Structure and Function of Cholinesterases and Related Proteins. Springer US, 1998. http://dx.doi.org/10.1007/978-1-4899-1540-5_76.

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Millard, Charles B., Gitay Kryger, Arie Ordentlich, et al. "Crystal Structures of “Aged” Phosphorylated and Phosphonylated Torpedo Californica Acetylcholinesterase." In Structure and Function of Cholinesterases and Related Proteins. Springer US, 1998. http://dx.doi.org/10.1007/978-1-4899-1540-5_115.

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Millard, Charles B., Gitay Kryger, Arie Ordentlich, et al. "Crystal Structures of “Aged” Phosphorylated and Phosphonylated Torpedo Californica Acetylcholinesterase." In Structure and Function of Cholinesterases and Related Proteins. Springer US, 1998. http://dx.doi.org/10.1007/978-1-4899-1540-5_130.

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Greenblatt, Harry M., Gitay Kryger, Michal Harel, et al. "Crystal Structures of Complexes of E2020-Related Compounds with Torpedo Californica Acetylcholinesterase." In Structure and Function of Cholinesterases and Related Proteins. Springer US, 1998. http://dx.doi.org/10.1007/978-1-4899-1540-5_103.

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9

Evans, Philip R., and Filippo Mancia. "Insights on the Reaction Mechanism of Methyl-malonyl-CoA mutase from the Crystal Structure." In Vitamin B12 and B12 -Proteins. Wiley-VCH Verlag GmbH, 2007. http://dx.doi.org/10.1002/9783527612192.ch13.

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Scapin, Giovanna, Paola Spadon, Mario Mammi, Giuseppe Zanotti, and Hugo L. Monaco. "Crystal structure of chicken liver basic fatty acid-binding protein at 2.7 Å resolution." In Cellular Fatty Acid-binding Proteins. Springer US, 1990. http://dx.doi.org/10.1007/978-1-4615-3936-0_12.

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Conference papers on the topic "Proteins crystal structure"

1

Chirikjian, Gregory S. "Kinematics Meets Crystallography: The Concept of a Motion Space." In ASME 2014 International Design Engineering Technical Conferences and Computers and Information in Engineering Conference. American Society of Mechanical Engineers, 2014. http://dx.doi.org/10.1115/detc2014-34243.

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In this paper, it is shown how rigid-body kinematics can be used to assist in determining the atomic structure of proteins and nucleic acids when using x-ray crystallography, which is a powerful method for structure determination. The importance of determining molecular structures for understanding biological processes and for the design of new drugs is well known. Phasing is a necessary step in determining the three-dimensional structure of molecules from x-ray diffraction patterns. A computational approach called molecular replacement (MR) is a well-established method for phasing of x-ray di

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Cuppoletti, John, Christopher J. Ferrante, and Danuta H. Malinowska. "Engineered Ion Channels on Synthetic Flexible Membranes: Ion Channel Devices With Focus on Peptides." In ASME 2009 Conference on Smart Materials, Adaptive Structures and Intelligent Systems. ASMEDC, 2009. http://dx.doi.org/10.1115/smasis2009-1243.

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Recent studies of engineered ion channels on synthetic flexible membranes realized unprecedented materials properties. Starting with ion channels of known sequence and crystal structures, these studies outlined the structural basis for functional and regulatory properties, and developed new computational tools capable of predicting structural and functional properties of the native ion channels as well as native or engineered ion channels that were similar in structure to each other. The approaches taken to prepare the engineered composite membranes and the computational tools are generally ap

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Zamiri, Amir Reza, and Suvranu De. "Multiscale Modeling of Protein Crystals: Application to Tetragonal Lysozyme." In ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology. ASMEDC, 2010. http://dx.doi.org/10.1115/nemb2010-13170.

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Recently, protein crystals have emerged as promising bionanoporous materials for different applications including highly selective biocatalysis, biosensing, bioseparation, vaccine formulation, and drug delivery. The environmental working conditions require the protein crystals to be both chemically and mechanically stable. The structure, behavior, and mechanical properties of protein crystals play an important role in the performance and life cycle of these materials [1,2]. In this work we introduce a strategy for evaluating the mechanical response of protein crystals with the tetragonal lysoz

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Sugiyama, Masano T., and Victor H. Barocas. "Phase Diagram Visualization via Continuously-Fed Crystallization: Experiments and Model." In ASME 2009 Summer Bioengineering Conference. American Society of Mechanical Engineers, 2009. http://dx.doi.org/10.1115/sbc2009-205229.

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A protein’s atomic level three-dimensional structure is typically determined by X-ray diffraction of a high-quality protein crystal (Figure 1a). The X-ray bream is diffracted inside the crystal producing spots at various locations (Figure 1b) which can be used to back out the location of the electron cloud of the protein which is used to solve the structure (Figure 1c). The current bottleneck in these structural determination projects is in growing a diffraction quality protein crystal. Current growth methods involve testing hundreds of conditions in this multi-parametric process without knowl

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BEHESHTI, AZIZOLLA, AHMAD REZA RAHMANI, and MOAYAD HOSAINI SADR. "SYNTHESIS AND CRYSTAL STRUCTURE STUDIES OF Cu(I) COMPLEXES WITH PYRAZOLYBORATEO LIGANDS: AN APPROACH TO SYNTHETIC MODEL OF THE ACTIVE SITE OF BLUE COPPER PROTEINS SUCH AS PLASTOCYANIN." In Proceedings of the 8th Asian Conference. WORLD SCIENTIFIC, 2002. http://dx.doi.org/10.1142/9789812776259_0097.

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Clark, Pamela, Jessica Grant, Samantha Monastra, Filip Jagodzinski, and Ileana Streinu. "Periodic rigidity of protein crystal structures." In 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS). IEEE, 2012. http://dx.doi.org/10.1109/iccabs.2012.6182631.

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Grosse-Kunstleve, Ralf W., Nigel W. Moriarty, and Paul D. Adams. "Torsion Angle Refinement and Dynamics as a Tool to Aid Crystallographic Structure Determination." In ASME 2009 International Design Engineering Technical Conferences and Computers and Information in Engineering Conference. ASMEDC, 2009. http://dx.doi.org/10.1115/detc2009-87737.

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Crystallographic methods using experimental diffraction data have produced about 85% of the macromolecular structures in the Protein Data Bank. Before deposition, nearly all crystal structures are refined with gradient-driven optimization techniques. Refinement is typically performed with iterative local optimization methods. A common problem is convergence to local minima. Reparameterization of the model in torsion angle space reduces the number of parameters. This in itself can help to escape from local minima. Combination with rigid-body dynamics algorithms results in an important tool for

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Xu, Qifang, Kimberly Malecka, Jeffrey Peterson, and Roland L. Dunbrack. "Abstract LB-034: Identification of novel autophosphorylation structures in crystals of protein kinases." In Proceedings: AACR 106th Annual Meeting 2015; April 18-22, 2015; Philadelphia, PA. American Association for Cancer Research, 2015. http://dx.doi.org/10.1158/1538-7445.am2015-lb-034.

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Zheng, Zhuoyuan, Chen Xin, and Yumeng Li. "Numerical Study on the Interfacial Modification Effects of Soy Protein on Poly(Vinylidene Fluoride)." In ASME 2019 International Mechanical Engineering Congress and Exposition. American Society of Mechanical Engineers, 2019. http://dx.doi.org/10.1115/imece2019-11694.

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Abstract The application of bio-degradable green materials is a rising global trend during the past decades for the sake of environment protection and sustainable development. Soy protein-based biomaterial is a promising candidate to replace the petroleum-based synthetic materials and was proved to be an effective functional modifier for polymers from our previous studies. Molecular dynamic (MD) simulation is implemented in this study to provide insights in understanding the underlying mechanisms. 11S molecule is chosen as a representative of soy protein, and three different denaturation proce

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Northey, Tom. "Crystal structures and binding dynamics of odorant-binding protein 3 from two aphid speciesMegoura viciaeandNasonovia ribisnigri." In 2016 International Congress of Entomology. Entomological Society of America, 2016. http://dx.doi.org/10.1603/ice.2016.110369.

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Reports on the topic "Proteins crystal structure"

1

Bolen, Robert, and Aleida Perez. Determination and Refinement of the Crystal Structure of Proteins Block Allocation Group at Brookhaven National Laboratory. Office of Scientific and Technical Information (OSTI), 2018. http://dx.doi.org/10.2172/1477951.

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Ranatunga, Wasantha K., and Gloria Borgstahl. Towards an Atomic Understanding of Double-Strand Break Repair: Crystal Structure of Human RAD52 Protein. Defense Technical Information Center, 2001. http://dx.doi.org/10.21236/ada396666.

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Ranatunga, Wasantha K., and Gloria Borgstahl. Towards an Atomic Understanding of Double-Strand Break Repair: Crystal Structure of Human RAD52 Protein. Defense Technical Information Center, 2002. http://dx.doi.org/10.21236/ada408102.

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Sanchez, Luis, and Pamela J. Bjorkman. Determination of the Crystal Structure of Human Zn-Alpha 2-Glycoprotein, A Protein Implicated in Breast Cancer. Defense Technical Information Center, 1999. http://dx.doi.org/10.21236/ada383017.

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Bjorkman, Pamela, and Arthur Chirino. Determination of the Crystal Structure of Human Zn-Alpha 2-Gylcoprotein, A Protein Implicated in Breast Cancer. Defense Technical Information Center, 2000. http://dx.doi.org/10.21236/ada391407.

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