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Academic literature on the topic 'PyMol Viewer'

Author: Grafiati
Published: 7 June 2025
Last updated: 2 August 2025

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Journal articles on the topic "PyMol Viewer"

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Lua, Rhonald C., and Olivier Lichtarge. "PyETV: a PyMOL evolutionary trace viewer to analyze functional site predictions in protein complexes." Bioinformatics 26, no. 23 (2010): 2981–82. http://dx.doi.org/10.1093/bioinformatics/btq566.

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S, Sujatha, and Rajini R. "In-Silico Enactment of Musa paradisiaca (L.) Exudate Against the Urotlithiatic Disease by Docking Study." Indian Journal of Science and Technology 17, no. 28 (2024): 2889–96. https://doi.org/10.17485/IJST/v17i28.1899.

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Abstract <strong>Objectives:</strong>&nbsp;Urolithiasis is a condition that occurs when the stones exit the renal pelvis and move onto the remainder of the urinary collecting system. Musa paradisiaca (L.) is a plant with high nutritive value and has been used for the treatment of various diseases including urolithiasis. The objective of the present study was designed to detect the receptor-ligand binding energy and interaction through a molecular docking from the bio-active compounds in an exudates of M. paradisiaca pseudo stem on urolithiatic causative protein named as glycolate oxidase recep
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Sujatha, S., and R. Rajini. "In-Silico Enactment of Musa paradisiaca (L.) Exudate Against the Urotlithiatic Disease by Docking Study." Indian Journal Of Science And Technology 17, no. 28 (2024): 2889–96. http://dx.doi.org/10.17485/ijst/v17i28.1899.

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Objectives: Urolithiasis is a condition that occurs when the stones exit the renal pelvis and move onto the remainder of the urinary collecting system. Musa paradisiaca (L.) is a plant with high nutritive value and has been used for the treatment of various diseases including urolithiasis. The objective of the present study was designed to detect the receptor-ligand binding energy and interaction through a molecular docking from the bio-active compounds in an exudates of M. paradisiaca pseudo stem on urolithiatic causative protein named as glycolate oxidase receptor (PDB ID: 2RDU). Methods: In
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4

Mohd., Azyumardi Azra. "A Setting Technique for Comparative Protein Modelling for Web based SMART Tool." Applied Science and Biotechnology Journal for Advanced Research 3, no. 1 (2024): 21–25. https://doi.org/10.5281/zenodo.10691316.

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When the "hairless protein" linked to the hairless gene, which is necessary for hair growth, stops working, the result will be total hairlessness. This gene is located on chromosome 8 at locations 22027873-22045326. The hairless gene, which similarly aids in histone demethylation, is a member of the JmjC domain superfamily. With 1189 residues in the hairless protein, the domain sequence spans positions 946 to 1157 and is 212 amino acids long. JmjC domains have been identified in over 100 bacterial and eukaryotic sequences due to significant sequence similarity. Among them the human hairless ge
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Malki, Esam. "Structural studies on azadirachtin targeting the glucuronosyltransferase from lymphatic filariasis and its inhibition." Majmaah Journal of Health Sciences 12, no. 2 (2024): 69. http://dx.doi.org/10.5455/mjhs.2024.02.008.

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Background and Aims: Brugia malayi, Brugia timori, and Wuchereria bancrofti are parasitic worms that cause lymphatic filariasis, also known as elephantiasis in some parts of the world. Because no effective vaccines and current treatments have adverse pharmacological properties, this condition has sparked much interest in the drug discovery community. This research aims to assess the efficacy of azadirachtin against a possible therapeutic target, intestine glucuronosyltransferase protein, in treating and preventing lymphatic filariasis. Methods: I-Tasser was used to create the protein, Uniprot
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Wischmeyer, Joshua, Christine Baird, Julian Grandvallet Contreras, Alexander Tran, Tsu Phang, and Marilyn Manco-Johnson. "A Novel Factor VIII Mutation with Increased Activity, Severe Thrombosis and Resistance to Activated Protein C." Blood 144, Supplement 1 (2024): 135. https://doi.org/10.1182/blood-2024-202202.

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Background: An 18-year-old male presented with recurrent, life-threatening thromboses since birth including arterial (perinatal stroke, splenic infarct) and venous (bilateral lower extremity, mesenteric vein, portal vein and pulmonary emboli). He was found to have markedly elevated factor VIII (FVIII) activity ranging from 300 to 900%. Objective: The objective of this study was to investigate this abnormal FVIII function and structure. Methods: Assays performed included: prothrombin time (PT)/international normalized ratio (INR), activated partial thromboplastin time (aPTT), fibrinogen, comple
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Majolagbe, Olusola Nathaniel, Felicia Oguntunji, Ezekiel Gbadebo Adeyeni, Yetunde Mutiat Feruke-Bello, and Louis Odinakose Ezediuno. "Synthesis and Determination of Antimicrobial Efficacies of Secondary Metabolite of Streptomyces longisporoflavus and its 3D-Protein Structural Prediction." Journal of Advances in Medical and Pharmaceutical Sciences 25, no. 3 (2023): 20–30. http://dx.doi.org/10.9734/jamps/2023/v25i3605.

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Aims: The need for new drug molecules is of high significance considering the rate at which pathogenic bacteria evolve into drug-resistant pathogens. Actinomycetes have been reported as valuable biological agents that possess potent bioactive molecules. This work aims to isolate local strains of actinomycetes in the environment and determine their antimicrobial activities against some clinical isolates.&#x0D; Study Design: This was an in-vitro study.&#x0D; Place and Duration of Study: The research was carried out at the Microbial Resources Research Laboratory, Department of Pure and Applied Bi
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8

Ezediuno, Louis Odinakaose, Michael Asebake Ockiya, Luqman Oluwaseun Awoniyi, Adeola Oyepeju Sangodare, Kehinde Busuyi David, and Faith Owabhel Robert. "Developing cancer vaccine with carcinoembryonic antigen and IGF-1R as immunostimulants using immunoinformatics approach." Korean Journal of Clinical Oncology 21, no. 1 (2025): 20–31. https://doi.org/10.14216/kjco.24326.

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Purpose: Colorectal cancer (CRC) remains a significant global health burden, necessitating innovative approaches for prevention and treatment. This study proposes a multiepitope vaccine targeting carcinoembryonic antigen (CEA) and insulin-like growth factor-1 receptor (IGF-1R), two prominent biomarkers associated with CRC progression.Methods: Sequences of CEA and IGF-1R proteins were retrieved from NCBI databank, the sequences were aligned on the MEGA5 tool to identify conserved regions. Immunological and structural predictive analysis which include antigenic potential prediction, cytotoxic T-
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Mittal, Payal, Aritri Chowdhury, and Girish Chandra Arya. "An Insight into Absorption, Distribution, Metabolism, Excretion, and Toxicity Screening, Molecular Dynamic Simulation, and Molecular Docking of Glycitein as Hepatoprotective Isoflavone." Asian Journal of Pharmaceutical Research and Health Care 16, no. 2 (2024): 124–37. http://dx.doi.org/10.4103/ajprhc.ajprhc_76_23.

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ABSTRACT Background: Several chemicals and metals, as well as a number of pharmaceutical preparations, are reportedly thought to have a major impact on the emergence of liver disease. According to postcommercialization regulatory considerations, it has been regarded as the most predisposing factor for acute liver failure. Thus, according to recent statistics, nearly 1 in 10 people have a liver illness of some form. 5.5 million of them suffer from chronic liver disease. Any type of viral infection, immune system abnormalities, ingestion of too many poisons, cancer, or other genetic condition ma
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Janson, Giacomo, and Alessandro Paiardini. "PyMod 3: a complete suite for structural bioinformatics in PyMOL." Bioinformatics, October 3, 2020. http://dx.doi.org/10.1093/bioinformatics/btaa849.

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Abstract Summary The PyMod project is designed to act as a fully integrated interface between the popular molecular graphics viewer PyMOL, and some of the most frequently used tools for structural bioinformatics, e.g. BLAST, HMMER, Clustal, MUSCLE, PSIPRED, DOPE and MODELLER. Here we report its latest release, PyMod 3, which has been completely renewed with a graphical interface written in PyQt, to make it compatible with the most recent PyMOL versions, and has been extended with a large set of new functionalities compared to its predecessor, i.e. PyMod 2. Starting from the amino acid sequence
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Book chapters on the topic "PyMol Viewer"

1

Martz, Eric, and Timothy Driscoll. "Introduction to macromolecular visualization." In The Internet for Molecular Biologists. Oxford University PressOxford, 2004. http://dx.doi.org/10.1093/oso/9780199638871.003.0009.

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Abstract The ability to view a macromolecule in three dimensions is a great asset to science students and researchers alike. A decade ago, the primary method for examining 3D molecular structures was stereoscopic viewing, which often required training or special glasses. Now a number of excellent computer tools, many of them free, are available for rendering molecular structures in 3D, interacting with them, and customizing their appearance. Some are stand-alone programs like WebLab ViewerPro and DeepView Swiss-Pdb Viewer. Others are browser plug-ins like Chime. Still others, like Protein Expl
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