Academic literature on the topic 'QTL detection'

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Journal articles on the topic "QTL detection"

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Freyer, G., and N. Vukasinovic. "Comparison of granddaughter design and general pedigree design analysis of QTL in dairy cattle: a simulation study." Czech Journal of Animal Science 50, No. 12 (2011): 545–52. http://dx.doi.org/10.17221/4260-cjas.

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Traditional methods for detection and mapping of quantitative trait loci (QTL) in dairy cattle populations are usually based on daughter design (DD) or granddaughter design (GDD). Although these designs are well established and usually successful in detecting QTL, they consider sire families independently of each other, thereby ignoring relationships among other animals in the population and consequently, reducing the power of QTL detection. In this study we compared a traditional GDD with a general pedigree design (GPD) and assessed the precision and power of both methods for detecting and lo
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Santos, Francisco Herbeth Costa dos, José Jaime Vasconcelos Cavalcanti, and Fanuel Pereira da Silva. "QTL detection for physicochemical characteristics of cashew apple." Crop Breeding and Applied Biotechnology 11, no. 1 (2011): 17–26. http://dx.doi.org/10.1590/s1984-70332011000100003.

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The identification of quantitative trait loci (QTL) and marker-assisted selection have aroused great interest in breeding programs aiming at fruit quality. The objective of this study was to detect QTL related to the quality of the cashew apple. The physicochemical characteristics oligomeric phenolics, total soluble solids, total titrable acidity and vitamin C contents were analyzed in the mapped cashew population. QTL were detected by QTL interval and multiple QTL mapping. The results showed high phenotypic variation in the segregating F1 generation for all traits. Eighteen QTL associated wit
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Cavalcanti, José Jaime Vasconcelos, Francisco Herbeth Costa dos Santos, Fanuel Pereira da Silva, and Cássia Renata Pinheiro. "QTL detection of yield-related traits of cashew." Crop Breeding and Applied Biotechnology 12, no. 1 (2012): 60–66. http://dx.doi.org/10.1590/s1984-70332012000100008.

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The identification of quantitative trait loci (QTL) and marker-assisted selection with a view to breeding programs have aroused great interest, including for cashew improvement. This study identified QTL for yield-related traits: nut weight, male and hermaphrodite flowers. The traits were evaluated in 71 F1 genotypes of the cross CCP 1001 x CP 96. The methods of interval mapping and multiple QTL mapping were applied to identify QTL. Eleven QTL were detected: three for nut weight, four for male flowers and four for hermaphrodite flowers. The QTL accounted for 3.79 to 12.98 % of the total phenot
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Blaker, K. M., J. X. Chaparro, and T. G. Beckman. "DETECTION OF DORMANCY QTL IN PEACH." Acta Horticulturae, no. 929 (March 2012): 103–6. http://dx.doi.org/10.17660/actahortic.2012.929.13.

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Charmet, Gilles. "Power and accuracy of QTL detection: simulation studies of one-QTL models." Agronomie 20, no. 3 (2000): 309–23. http://dx.doi.org/10.1051/agro:2000129.

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Knott, Sara A., and Chris S. Haley. "Multitrait Least Squares for Quantitative Trait Loci Detection." Genetics 156, no. 2 (2000): 899–911. http://dx.doi.org/10.1093/genetics/156.2.899.

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Abstract A multiple-trait QTL mapping method using least squares is described. It is presented as an extension of a single-trait method for use with three-generation, outbred pedigrees. The multiple-trait framework allows formal testing of whether the same QTL affects more than one trait (i.e., a pleiotropic QTL) or whether more than one linked QTL are segregating. Several approaches to the testing procedure are presented and their suitability discussed. The performance of the method is investigated by simulation. As previously found, multitrait analyses increase the power to detect a pleiotro
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de Koning, Dirk-Jan, Henk Bovenhuis, and Johan A. M. van Arendonk. "On the Detection of Imprinted Quantitative Trait Loci in Experimental Crosses of Outbred Species." Genetics 161, no. 2 (2002): 931–38. http://dx.doi.org/10.1093/genetics/161.2.931.

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Abstract In this article, the quantitative genetic aspects of imprinted genes and statistical properties of methods to detect imprinted QTL are studied. Different models to detect imprinted QTL and to distinguish between imprinted and Mendelian QTL were compared in a simulation study. Mendelian and imprinted QTL were simulated in an F2 design and analyzed under Mendelian and imprinting models. Mode of expression was evaluated against the H0 of a Mendelian QTL as well as the H0 of an imprinted QTL. It was shown that imprinted QTL might remain undetected when analyzing the genome with Mendelian
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Nakamichi, Reiichiro, Yasuo Ukai, and Hirohisa Kishino. "Detection of Closely Linked Multiple Quantitative Trait Loci Using a Genetic Algorithm." Genetics 158, no. 1 (2001): 463–75. http://dx.doi.org/10.1093/genetics/158.1.463.

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AbstractThe existence of a quantitative trait locus (QTL) is usually tested using the likelihood of the quantitative trait on the basis of phenotypic character data plus the recombination fraction between QTL and flanking markers. When doing this, the likelihood is calculated for all possible locations on the linkage map. When multiple QTL are suspected close by, it is impractical to calculate the likelihood for all possible combinations of numbers and locations of QTL. Here, we propose a genetic algorithm (GA) for the heuristic solution of this problem. GA can globally search the optimum by i
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ROWE, SUZANNE J., PONG-WONG RICARDO, CHRISTOPHER S. HALEY, SARA A. KNOTT, and DIRK-JAN DE KONING. "Detecting dominant QTL with variance component analysis in simulated pedigrees." Genetics Research 90, no. 4 (2008): 363–74. http://dx.doi.org/10.1017/s0016672308009336.

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SummaryDominance is an important source of variation in complex traits. Here, we have carried out the first thorough investigation of quantitative trait locus (QTL) detection using variance component (VC) models extended to incorporate both additive and dominant QTL effects. Simulation results showed that the empirical distribution of the test statistic when testing for dominant QTL effects did not behave in accordance with existing theoretical expectations and varied with pedigree structure. Extensive simulations were carried out to assess accuracy of estimates, type 1 error and statistical p
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Jannink, Jean-Luc, and Ritsert Jansen. "Mapping Epistatic Quantitative Trait Loci With One-Dimensional Genome Searches." Genetics 157, no. 1 (2001): 445–54. http://dx.doi.org/10.1093/genetics/157.1.445.

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AbstractThe discovery of epistatically interacting QTL is hampered by the intractability and low power to detect QTL in multidimensional genome searches. We describe a new method that maps epistatic QTL by identifying loci of high QTL by genetic background interaction. This approach allows detection of QTL involved not only in pairwise but also higher-order interaction, and does so with one-dimensional genome searches. The approach requires large populations derived from multiple related inbred-line crosses as is more typically available for plants. Using maximum likelihood, the method contras
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Dissertations / Theses on the topic "QTL detection"

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Grace, Christopher Philip. "Detection and exploitation of expression QTL in drug discovery and development." Thesis, University of Oxford, 2015. https://ora.ox.ac.uk/objects/uuid:7b174e64-d17f-4e2c-b366-065684bfd813.

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Expression quantitative trait loci (eQTLs) are genetic markers associated with transcription of Ribonucleic Acid (RNA). eQTLs are detected using association analysis to detect correlations between RNA expression data (microarray or RNA-SEQ) and the genotypes of individuals within a study. Trans-ethnic meta-analysis can increase power to detect genetic variants for eQTLs and improve fine-mapping resolution because of differential patterns of linkage disequilibrium (LD) between diverse populations. Lymphoblastoid cell lines (LCLs) from samples in the Phase II and III HapMap populations have been
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Strillacci, M. G. "GENOME-WIDE DETECTION OF QTL AND CNVS IN DAIRY CATTLE POPULATION." Doctoral thesis, Università degli Studi di Milano, 2014. http://hdl.handle.net/2434/243633.

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The QTL involved in susceptibility/resistance of infectious diseases and in the productive traits variations, are characterized by genetic heterogeneity and multifactorial inheritance, involving gene polymorphisms from different alternative pathways. With the availavility of single nucleotide polymorphism (SNP) genotyping arrays, the genome-wide association studies (GWAS) have been frequently used to determine the genetic component of complex trait. The Copy Number Variations (CNVs) are another genomic marker that can be possibly used in GWAS and that can be identified from SNP chips themselve
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McDonald, Gavin. "Relatedness determination and detection of spawning time QTL in rainbow trout, Oncorhynchus mykiss." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 2001. http://www.collectionscanada.ca/obj/s4/f2/dsk3/ftp04/MQ58359.pdf.

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Giraud, Héloïse. "Genetic analysis of hybrid value for silage maize in multiparental designs : QTL detection and genomic selection." Thesis, Université Paris-Saclay (ComUE), 2016. http://www.theses.fr/2016SACLS013/document.

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La sélection génomique offre de nouvelles perspectives en amélioration des plantes pour la sélection de caractères complexes. Le travail proposé porte sur l’évaluation de son intérêt dans le cadre d’un programme de sélection réciproque pour la valeur d’hybrides entre deux groupes génétiques de maïs complémentaires. Il s’appuie sur un dispositif expérimental original constitué de 900 hybrides produits dans un plan factoriel entre deux dispositifs multiparentaux connectés. L’objectif de la sélection est d’améliorer le rendement ensilage des hybrides tout en améliorant leur digestibilité. Une réf
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Chatziplis, Dimitrios. "The use of selective genotyping in the detection of quantitative trait loci (QTL) by sib pair analysis." Thesis, University of Edinburgh, 1998. http://hdl.handle.net/1842/14410.

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This study covered two main areas in the methodology of Quantitative Trait Locus (QTL) detection with the use of genetic markers: i) the use of sib pair analysis for QTL detection in animal populations of large family size and ii) the use of selective genotyping in sib pair analysis for the reduction of genotyping costs. The regression of the squared phenotypic differences of sib pairs on the proportion of alleles they share Identical By Descent (IBD) at a marker locus can provide a test of linkage between a marker and a QTL. The t-values of the regression coefficient can provide a way to dete
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Narita, Akira. "A system for detection of multiple quantitative trait loci (QTL) under the mixed inheritance model in outbred populations." Kyoto University, 2004. http://hdl.handle.net/2433/147762.

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Kyoto University (京都大学)<br>0048<br>新制・課程博士<br>博士(農学)<br>甲第10913号<br>農博第1419号<br>新制||農||891(附属図書館)<br>学位論文||H16||N3924(農学部図書室)<br>UT51-2004-G760<br>京都大学大学院農学研究科応用生物科学専攻<br>(主査)教授 佐々木 義之, 教授 守屋 和幸, 教授 広岡 博之<br>学位規則第4条第1項該当
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Hadjipavlou, Georgia. "Detection and characterisation of quantitative trait loci affecting muscle and growth phenotypes in sheep." Thesis, University of Edinburgh, 2010. http://hdl.handle.net/1842/4603.

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This thesis addresses the dissection and characterisation of quantitative trait loci (QTL) affecting production traits in sheep. Firstly, the association between specific genetic polymorphisms and complex variation in weight, muscle and fat depositions was investigated. Research concentrated on assessing the presence, correspondence and significance of two single nucleotide polymorphisms (SNPs) in the GDF8 region of ovine chromosome 2, reportedly affecting muscle production. Commercial populations of British Texel, Suffolk and Charollais sheep were studied. The SNPs were absent in Suffolk and
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Rosado, Carla Cristina Gonçalves. "Genética da resistência à murcha-de-ceratocystis (Ceratocystis fimbriata) em Eucalyptus spp." Universidade Federal de Viçosa, 2009. http://locus.ufv.br/handle/123456789/4725.

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Made available in DSpace on 2015-03-26T13:42:16Z (GMT). No. of bitstreams: 1 texto completo.pdf: 591447 bytes, checksum: bc5b0512ef38e95e126af3f20c57ce47 (MD5) Previous issue date: 2009-02-17<br>Conselho Nacional de Desenvolvimento Científico e Tecnológico<br>The ceratocystis wilt (Ceratocystis fimbriata) is currently, one of the most important diseases in commercial eucalypt plantations in Brazil. The main symptoms are wilting, canker and wood darkening. The use of resistant Eucalyptus genotypes is the best control method. Despite the existence of resistant genotypes, the genetic basis of r
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Bouffier, Bruno. "Genetic and ecophysiological dissection of tolerance to drought and heat stress in bread wheat : from environmental characterization to QTL detection." Thesis, Clermont-Ferrand 2, 2014. http://www.theses.fr/2014CLF22532/document.

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L’étude des rendements en blé a mis en évidence une stagnation apparue dans les années 1990, notamment en France, et principalement lié aux stress hydrique et thermique. Dans ce contexte, améliorer la tolérance du blé européen à ces stress est de première importance. Cette étude avait pour but d’étudier le déterminisme génétique de la tolérance à ces stress chez le blé. Pour ce faire, trois populations de blé tendre du CIMMYT combinant des caractères d’adaptation à ces stress ont été cultivées en conditions irriguée, sèche et stress thermique irriguée plusieurs années. Des caractères physiolog
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Mancini, Melina Cristina 1983. "Construção de um mapa funcional e detecção de QTLs de importância econômica em uma população derivada de cruzamento bi-parental entre duas variedades comerciais em cana-de-açúcar = Functional genetic map construction and QTL of economic importance detection in a derived bi-parental cross between two commercial sugarcane varieties." [s.n.], 2014. http://repositorio.unicamp.br/jspui/handle/REPOSIP/316487.

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Orientadores: Anete Pereira de Souza, Antonio Augusto Franco Garcia<br>Tese (doutorado) - Universidade Estadual de Campinas, Instituto de Biologia<br>Made available in DSpace on 2018-08-25T23:03:56Z (GMT). No. of bitstreams: 1 Mancini_MelinaCristina_D.pdf: 10767402 bytes, checksum: b866f6316486301d3466116f8be3049a (MD5) Previous issue date: 2014<br>Resumo: A crescente busca por variedades de cana-de-açúcar com maior produtividade e resistentes às principais doenças consiste em um importante objetivo para o sucesso de um programa de melhoramento. Assim, a utilização de marcadores moleculares
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Books on the topic "QTL detection"

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Bush, Shirley, and Eduardo Bruera. Improving quality of life. Oxford University Press, 2013. http://dx.doi.org/10.1093/med/9780199550173.003.0012.

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Chapter 12 discusses oncological treatments that may be administered with either a curative or palliative intent. If cancer in a patient cannot be cured, then the focus of treatment changes to achieving an improvement in survival time, reducing symptom burden, optimizing performance, and hence improving quality of life (QOL). Palliative care is the last of the four components of a cancer control programme, after prevention, early detection, and diagnosis and treatment. Patients with advanced cancer may experience physical, psychosocial, and spiritual difficulties throughout their illness which
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Gandhi, Sanjay, and William R. Lewis. ECG monitoring in the ICU. Oxford University Press, 2016. http://dx.doi.org/10.1093/med/9780199600830.003.0129.

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Electrocardiographic (ECG) monitoring is routinely used in hospitals for patients with a wide range of cardiac and non-cardiac diagnoses. Besides simple monitoring of heart rate and detection of life-threatening arrhythmias, the goals of ECG monitoring include detection of myocardial ischaemia, diagnosis of complex arrhythmia, and identification of a prolonged QT interval. The ECG remains a cornerstone in diagnosis and management of patients with coronary ischaemia. Over the past decade, there has been an increase in the number and complexity of electrophysiological interventions, including co
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Book chapters on the topic "QTL detection"

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Subramaniam, Meena, Noah Zaitlen, and Jimmie Ye. "PhAT-QTL: A Phase-Aware Test for QTL Detection." In Bioinformatics Research and Applications. Springer International Publishing, 2017. http://dx.doi.org/10.1007/978-3-319-59575-7_14.

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Garrick, Dorian J., and Rohan L. Fernando. "Implementing a QTL Detection Study (GWAS) Using Genomic Prediction Methodology." In Methods in Molecular Biology. Humana Press, 2013. http://dx.doi.org/10.1007/978-1-62703-447-0_11.

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Sourdille, P., M. R. Perretant, G. Charmet, et al. "Detection of QTL for bread-making quality in wheat using molecular markers." In Developments in Plant Breeding. Springer Netherlands, 1999. http://dx.doi.org/10.1007/978-94-011-4475-9_41.

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Dirlewanger, Elisabeth, Jacques Claverie, Amy F. Iezzoni, and Ana Wünsch. "Sweet and Sour Cherries: Linkage Maps, QTL Detection and Marker Assisted Selection." In Genetics and Genomics of Rosaceae. Springer New York, 2009. http://dx.doi.org/10.1007/978-0-387-77491-6_14.

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del Carmen Lagunes Espinoza, L., T. Huguet, and B. Julier. "Multi-population QTL Detection for Flowering Time, Stem Elongation and Quality Traits in Medicago truncatula." In Breeding strategies for sustainable forage and turf grass improvement. Springer Netherlands, 2012. http://dx.doi.org/10.1007/978-94-007-4555-1_24.

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Houston, R. D., A. Gheyas, A. Hamilton, et al. "Detection and Confirmation of a Major QTL Affecting Resistance to Infectious Pancreatic Necrosis (IPN) in Atlantic Salmon (Salmo Salar)." In Animal Genomics for Animal Health. KARGER, 2008. http://dx.doi.org/10.1159/000317160.

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Tester, David J., Melissa L. Will, and Michael J. Ackerman. "Mutation Detection in Congenital Long QT Syndrome." In Methods in Molecular Medicine™. Humana Press, 2006. http://dx.doi.org/10.1007/978-1-59745-159-8_13.

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Giglio, Marilena, Andrea Zifarelli, Pietro Patimisco, et al. "Broadband Gas QEPAS Detection Exploiting a Monolithic DFB-QCL Array." In Terahertz (THz), Mid Infrared (MIR) and Near Infrared (NIR) Technologies for Protection of Critical Infrastructures Against Explosives and CBRN. Springer Netherlands, 2021. http://dx.doi.org/10.1007/978-94-024-2082-1_5.

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Zhao, Ming, and YuMing Shen. "The Application of Qt in Liquid Level Detection." In Advances in Intelligent and Soft Computing. Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-25194-8_10.

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Moisan, Marie-Pierre. "From QTL Detection to Gene Identification." In Neurobehavioral Genetics. CRC Press, 1999. http://dx.doi.org/10.1201/9781420048384.ch7.

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Conference papers on the topic "QTL detection"

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Bo Song, Weibing Yang, Mingyu Chen, Xiaofang Zhao, and Jianping Fan. "QTL: An efficient scheduling policy for 10Gbps network intrusion detection system." In 2010 IEEE Symposium on Computers and Communications (ISCC). IEEE, 2010. http://dx.doi.org/10.1109/iscc.2010.5546727.

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Anderson, James P., Alejandro Camou, Eric L. Petersen, Mark Harris, and David M. Cusano. "Carbon Monoxide Emission Measurements From a Supercritical CO2 Combustor Rig Using a Mid-Infrared Laser Absorption Diagnostic." In ASME Turbo Expo 2019: Turbomachinery Technical Conference and Exposition. American Society of Mechanical Engineers, 2019. http://dx.doi.org/10.1115/gt2019-91779.

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Abstract A rugged, mid-infrared (IR) CO laser absorption diagnostic has been developed to monitor the amount of CO produced by a high-pressure CH4-O2 combustor test rig operating at supercritical CO2 conditions (30 MPa and 1150°C). The laser system operates at the fundamental absorption band, ν″ = 0, R(12), of CO near 4.5 μm. The mid-IR diagnostic was constructed from a tunable quantum cascade laser (QCL), an absorption cell with two window ports for monitoring CO exhaust concentration, and two IR photodetectors. Temperature and pressure sensors were mounted near the absorption cell to monitor
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Patel, C. Kumar N., Arkadiy Lyakh, Richard Maulini, Ilya Dunayevsiy, and Alexei Tsekoun. "QCL based detection of hazardous substances." In 2013 Conference on Lasers & Electro-Optics Europe & International Quantum Electronics Conference CLEO EUROPE/IQEC. IEEE, 2013. http://dx.doi.org/10.1109/cleoe-iqec.2013.6801942.

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Padilla-Jiménez, Amira C., William Ortiz-Rivera, John R. Castro-Suarez, Carlos Ríos-Velázquez, Iris Vázquez-Ayala, and Samuel P. Hernández-Rivera. "Microorganisms detection on substrates using QCL spectroscopy." In SPIE Defense, Security, and Sensing, edited by Augustus W. Fountain. SPIE, 2013. http://dx.doi.org/10.1117/12.2016099.

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Haibach, Frederick G., Alexander Mazurenko, and Erik Deutsch. "Detecting contamination with a QCL spectrometer." In SPIE OPTO, edited by Manijeh Razeghi, Eric Tournie, and Gail J. Brown. SPIE, 2012. http://dx.doi.org/10.1117/12.905483.

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Yang, Min, Zhen Wang, Qinxue Nie та Wei Ren. "QCL-based Cavity-Enhanced Absorption Spectroscopy of N2O at 4.5 μm". У Optics and Photonics for Sensing the Environment. Optica Publishing Group, 2022. http://dx.doi.org/10.1364/es.2022.etu4h.6.

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We present a cavity-enhanced absorption sensor for ambient N2O detection. The Pound-Drever-Hall technique was implemented to lock a quantum cascade laser to a high-finesse cavity by directly modulating the laser injection current.
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Handzel, R., C. Garnett, M. Li, et al. "Comparison of highly-automatic versus FDA-submitted QT measurements for the detection of moxifloxacin induced prolongation of the QTc interval." In 2008 35th Annual Computers in Cardiology Conference. IEEE, 2008. http://dx.doi.org/10.1109/cic.2008.4749136.

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Jouy, Pierre, Gustavo F. Villares, Johanna Wolf, Filippos Kapsalidis, Mattias Beck, and Jérôme Faist. "Self-detection of MIR QCL frequency combs (Withdrawal Notice)." In SPIE OPTO, edited by Alexey A. Belyanin and Peter M. Smowton. SPIE, 2017. http://dx.doi.org/10.1117/12.2254786.

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Zhen Wang and Wei Ren. "A QCL-based QEPAS sensor for sensitive C2H4 detection." In 2016 Progress in Electromagnetic Research Symposium (PIERS). IEEE, 2016. http://dx.doi.org/10.1109/piers.2016.7735558.

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Rehm, F., S. Vallecorsa, K. Borras, and D. Krücker. "QUANTUM MACHINE LEARNING FOR HEP DETECTOR SIMULATIONS." In 9th International Conference "Distributed Computing and Grid Technologies in Science and Education". Crossref, 2021. http://dx.doi.org/10.54546/mlit.2021.62.94.001.

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Quantum Machine Learning (qML) is one of the most promising and very intuitive applications onnear-term quantum devices which possess the potential to combat computing resource challengesfaster than traditional computers. Classical Machine Learning (ML) is taking up a significant role inparticle physics to speed up detector simulations. Generative Adversarial Networks (GANs) haveproven to achieve a similar level of accuracy compared to Monte Carlo-based simulations whiledecreasing the computation time by orders of magnitude. In this research we are moving on and applyquantum computing to GAN-b
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Reports on the topic "QTL detection"

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Fridman, Eyal, Jianming Yu, and Rivka Elbaum. Combining diversity within Sorghum bicolor for genomic and fine mapping of intra-allelic interactions underlying heterosis. United States Department of Agriculture, 2012. http://dx.doi.org/10.32747/2012.7597925.bard.

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Heterosis, the enigmatic phenomenon in which whole genome heterozygous hybrids demonstrate superior fitness compared to their homozygous parents, is the main cornerstone of modern crop plant breeding. One explanation for this non-additive inheritance of hybrids is interaction of alleles within the same locus. This proposal aims at screening, identifying and investigating heterosis trait loci (HTL) for different yield traits by implementing a novel integrated mapping approach in Sorghum bicolor as a model for other crop plants. Originally, the general goal of this research was to perform a gene
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David M. Hamby. A Multi-Layer Phoswich Radioxenon Detection System (7th Qtr Report), Reporting Period 10/01/07 - 12/31/07. Office of Scientific and Technical Information (OSTI), 2008. http://dx.doi.org/10.2172/922616.

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Perl-Treves, Rafael, Rebecca Grumet, Nurit Katzir, and Jack E. Staub. Ethylene Mediated Regulation of Sex Expression in Cucumis. United States Department of Agriculture, 2005. http://dx.doi.org/10.32747/2005.7586536.bard.

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Monoecious species such as melon and cucumber develop separate male and female (or bisexual) flowers on the same plant individual. They display complex genetic and hormonal regulation of sex patterns along the plant. Ethylene is known to play an important role in promoting femaleness and inhibiting male development, but many questions regarding critical sites of ethylene production versus perception, the relationship between ethylene and the sex determining loci, and the possible differences between melon and cucumber in this respect are still open. The general goal of the project was to eluci
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Gur, Amit, Edward Buckler, Joseph Burger, Yaakov Tadmor, and Iftach Klapp. Characterization of genetic variation and yield heterosis in Cucumis melo. United States Department of Agriculture, 2016. http://dx.doi.org/10.32747/2016.7600047.bard.

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Project objectives: 1) Characterization of variation for yield heterosis in melon using Half-Diallele (HDA) design. 2) Development and implementation of image-based yield phenotyping in melon. 3) Characterization of genetic, epigenetic and transcriptional variation across 25 founder lines and selected hybrids. The epigentic part of this objective was modified during the course of the project: instead of characterization of chromatin structure in a single melon line through genome-wide mapping of nucleosomes using MNase-seq approach, we took advantage of rapid advancements in single-molecule se
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Sela, Hanan, Eduard Akhunov, and Brian J. Steffenson. Population genomics, linkage disequilibrium and association mapping of stripe rust resistance genes in wild emmer wheat, Triticum turgidum ssp. dicoccoides. United States Department of Agriculture, 2014. http://dx.doi.org/10.32747/2014.7598170.bard.

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The primary goals of this project were: (1) development of a genetically characterized association panel of wild emmer for high resolution analysis of the genetic basis of complex traits; (2) characterization and mapping of genes and QTL for seedling and adult plant resistance to stripe rust in wild emmer populations; (3) characterization of LD patterns along wild emmer chromosomes; (4) elucidation of the multi-locus genetic structure of wild emmer populations and its correlation with geo-climatic variables at the collection sites. Introduction In recent years, Stripe (yellow) rust (Yr) caused
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Hovav, Ran, Peggy Ozias-Akins, and Scott A. Jackson. The genetics of pod-filling in peanut under water-limiting conditions. United States Department of Agriculture, 2012. http://dx.doi.org/10.32747/2012.7597923.bard.

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Pod-filling, an important yield-determining stage is strongly influenced by water stress. This is particularly true for peanut (Arachishypogaea), wherein pods are developed underground and are directly affected by the water condition. Pod-filling in peanut has a significant genetic component as well, since genotypes are considerably varied in their pod-fill (PF) and seed-fill (SF) potential. The goals of this research were to: Examine the effects of genotype, irrigation, and genotype X irrigation on PF and SF. Detect global changes in mRNA and metabolites levels that accompany PF and SF. Explo
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