Relevant bibliographies by topics / Repetitive DNA sequence

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  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers
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Academic literature on the topic 'Repetitive DNA sequence'

Author: Grafiati
Published: 4 June 2021
Last updated: 3 February 2022

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Journal articles on the topic "Repetitive DNA sequence"

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Nagaki, Kiyotaka, Hisashi Tsujimoto, Kazuhiro Isono, and Tetsuo Sasakuma. "Molecular characterization of a tandem repeat, Afa family, and its distribution among Triticeae." Genome 38, no. 3 (June 1, 1995): 479–86. http://dx.doi.org/10.1139/g95-063.

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We have characterized a so-called D genome specific repetitive DNA sequence (pAs1) of Aegilops squarrosa L. (2n = 14, genome DD) with respect to its DNA sequence and its distribution among Triticeae species. The clone consisted of three units of a repetitive DNA sequence of 336 or 337 base pairs, and was AT rich (65.2%). DNA analyses revealed the presence of the pAs1-like sequences in other genomes of Triticeae species, although the repetition was greatly (as much as 100-fold) variable among the genomes. The repetitive sequences from 10 diploid species were amplified using PCR with specific pr
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Loomis, William F., and Michael E. Gilpin. "Neutral mutations and repetitive DNA." Bioscience Reports 7, no. 7 (July 1, 1987): 599–606. http://dx.doi.org/10.1007/bf01119778.

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We have previously shown that computer simulations of processes that generate selectively advantageous changes together with random duplications and deletions give rise to genomes with many different genes embedded in a large amount of dispensable DNA sequence. We now explore the consequences of neutral changes on the evolution of genomes. We follow the consequences of sequence divergences that are neutral when they occur in dispensable sequences or extra copies of genes present in multigene families. We find that when divergence occurs at about the same frequency as duplication/deletion event
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Li, W., A. Van Soom, and L. Peelman. "Repeats as global DNA methylation marker in bovine preimplantation embryos." Czech Journal of Animal Science 62, No. 2 (February 6, 2017): 43–50. http://dx.doi.org/10.17221/29/2016-cjas.

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DNA methylation undergoes dynamic changes and is a crucial part of the epigenetic regulation during mammalian early development. To determine the DNA methylation levels in bovine embryos, we applied a bisulfite sequencing based method aimed at repetitive sequences including three retrotransposons (L1_BT, BovB, and ERV1-1-I_BT) and Satellite I. A more accurate estimate of the global DNA methylation level compared to previous methods using only one repeat sequence, like Alu, could be made by calculation of the weighted arithmetic mean of multiple repetitive sequences, considering the copy number
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ZEIN, SIMA S., ALEXANDRE A. VETCHER, and STEPHEN D. LEVENE. "PCR-BASED SYNTHESIS OF REPETITIVE SINGLE-STRANDED DNA FOR APPLICATIONS TO NANOBIOTECHNOLOGY." International Journal of Nanoscience 04, no. 03 (June 2005): 287–94. http://dx.doi.org/10.1142/s0219581x05003140.

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Recent data show that assembly of repetitive-sequence, single-stranded DNA molecules (ssDNA) and carbon nanotubes (CNTs) depend on the specific sequence repeat. Therefore, it is of practical interest to assess various methods for generating single-stranded DNA molecules that contain repetitive sequences. Existing automated synthesis procedures for generating long (> 100 nt) ssDNA molecules generate ssDNA products of variable purity and yield. An alternative to automated synthesis is the polymerase chain reaction (PCR), which provides a powerful tool for the amplification of minute amounts o
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Jahn, C. L., K. E. Prescott, and M. W. Waggener. "Organization of the micronuclear genome of oxytricha nova." Genetics 120, no. 1 (September 1, 1988): 123–34. http://dx.doi.org/10.1093/genetics/120.1.123.

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Abstract In the hypotrichous ciliated protozoan Oxytricha nova, approximately 95% of the micronuclear genome, including all of the repetitive DNA and most of the unique sequence DNA, is eliminated during the formation of the macronuclear genome. We have examined the interspersion patterns of repetitive and unique and eliminated and retained sequences in the micronuclear genome by characterizing randomly selected clones of micronuclear DNA. Three major classes of clones have been defined: (1) those containing primarily unique, retained sequences; (2) those containing only unique, eliminated seq
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Bell, George I., and David C. Torney. "Repetitive DNA sequences: Some considerations for simple sequence repeats." Computers & Chemistry 17, no. 2 (June 1993): 185–90. http://dx.doi.org/10.1016/0097-8485(93)85009-2.

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Badaracco, Gianfranco, Grazia Tubiello, Roberta Benfante, Franco Cotelli, Domenico Maiorano, and Nicoletta Landsberger. "Highly repetitive DNA sequence in parthenogeneticArtemia." Journal of Molecular Evolution 32, no. 1 (January 1991): 31–36. http://dx.doi.org/10.1007/bf02099926.

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Callaghan, M. J., and K. J. Beh. "A middle-repetitive DNA sequence element in the sheep parasitic nematode, Trichostrongylus colubriformis." Parasitology 109, no. 3 (September 1994): 345–50. http://dx.doi.org/10.1017/s0031182000078379.

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SummaryA novel repetitive DNA sequence in the sheep parasitic nematode Trichostrongylus colubriformis was cloned and sequenced. A l·1 kb repetitive sequence (Tc15) which hybridized with DNA from T. colubriformis but not with DNA from two other parasitic nematodes, Haemonchus contortus and Ostertagia circumcincta, or sheep was further characterized. Southern blot analysis showed that the repeat hybridized to a range of fragments in restriction digested T. colubriformis DNA and existed in multiple copy number tandem arrays. However, to define clearly the repetitive monomeric unit further screeni
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Paço, Ana, Renata Freitas, and Ana Vieira-da-Silva. "Conversion of DNA Sequences: From a Transposable Element to a Tandem Repeat or to a Gene." Genes 10, no. 12 (December 5, 2019): 1014. http://dx.doi.org/10.3390/genes10121014.

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Eukaryotic genomes are rich in repetitive DNA sequences grouped in two classes regarding their genomic organization: tandem repeats and dispersed repeats. In tandem repeats, copies of a short DNA sequence are positioned one after another within the genome, while in dispersed repeats, these copies are randomly distributed. In this review we provide evidence that both tandem and dispersed repeats can have a similar organization, which leads us to suggest an update to their classification based on the sequence features, concretely regarding the presence or absence of retrotransposons/transposon s
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Wang, Richard R. C., and Jun-Zhi Wei. "Variations of two repetitive DNA sequences in several Triticeae genomes revealed by polymerase chain reaction and sequencing." Genome 38, no. 6 (December 1, 1995): 1221–29. http://dx.doi.org/10.1139/g95-160.

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Genomes of Triticeae were analyzed using PCR with synthesized primers that were based on two published repetitive DNA sequences, pLeUCD2 (pLe2) and l-E6hcII-l (L02368), which were originally isolated from Thinopyrum elongatum. The various genomes produced a 240 bp PCR product having high homology with the repetitive DNA pLe2. The PCR fragments produced from different genomes differed mainly in amplification quantity and in base composition at 89 variable sites. On the other hand, amplification products from the primer set for L02368 were of different sizes and nucleotide sequences. These resul
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Dissertations / Theses on the topic "Repetitive DNA sequence"

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Cai, Zheng. "Repetitive sequence analysis for soybean genome sequences." Diss., Columbia, Mo. : University of Missouri-Columbia, 2005. http://hdl.handle.net/10355/4249.

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Thesis (M.S.)--University of Missouri-Columbia, 2005.<br>"May 2005" The entire dissertation/thesis text is included in the research.pdf file; the official abstract appears in the short.pdf file (which also appears in the research.pdf); a non-technical general description, or public abstract, appears in the public.pdf file. Includes bibliographical references.
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Arner, Erik. "Solving repeat problems in shotgun sequencing /." Stockholm, 2006. http://diss.kib.ki.se/2006/91-7140-996-3/.

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Wang, Xiaofei. "Molecular characterization and cytogenetic analysis of chicken repetitive DNA sequences /." Hong Kong : University of Hong Kong, 1999. http://sunzi.lib.hku.hk/hkuto/record.jsp?B20979393.

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王曉飛 and Xiaofei Wang. "Molecular characterization and cytogenetic analysis of chicken repetitive DNA sequences." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 1999. http://hub.hku.hk/bib/B31239419.

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Madsen, Susan M. "Divergence in repetitive DNA sequences among three sitopsis wheat species /." free to MU campus, to others for purchase, 1998. http://wwwlib.umi.com/cr/mo/fullcit?p9901260.

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Wang, Suyue. "Characterization of a Human 28S Ribosomal RNA Retropseudogene and Other Repetitive DNA Sequence Elements Isolated from a Human X Chromosome-Specific Library." Thesis, University of North Texas, 1994. https://digital.library.unt.edu/ark:/67531/metadc278083/.

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Three genomic clones encompassing human DNA segments (designated LhX-3, LhX-4, and LhX5) were isolated from an X chromosome-specific library and subjected to analysis by physical mapping and DNA sequencing. It was found that these three clones are very rich in repetitive DNA sequence elements and retropseudogenes.
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MacDonald, Anna Jayne, and n/a. "Sex chromosome microsatellite markers from an Australian marsupial: development, application and evolution." University of Canberra. n/a, 2008. http://erl.canberra.edu.au./public/adt-AUC20081217.122146.

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Microsatellites are simple repetitive DNA sequences that are used as genetic markers throughout the biological sciences. The high levels of variation observed at microsatellite loci contribute to their utility in studies at the population and individual levels. This variation is a consequence of mutations that change the length of microsatellite repeat tracts. Current understanding suggests that most mutations are caused by polymerase slippage during DNA replication and lead to changes of a single repeat unit in length, but some changes involving multiple repeats can also occur. Despite this s
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Sindi, Suzanne Soraya. "Describing and modeling repetitive sequences in DNA." College Park, Md. : University of Maryland, 2006. http://hdl.handle.net/1903/3796.

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Thesis (Ph. D.) -- University of Maryland, College Park, 2006.<br>Thesis research directed by: Applied Mathematics and Scientific Computation Program. Title from t.p. of PDF. Includes bibliographical references. Published by UMI Dissertation Services, Ann Arbor, Mich. Also available in paper.
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Li, Juan, and 李娟. "Molecular characterization of chicken repetitive DNA sequences." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2003. http://hub.hku.hk/bib/B42577287.

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Li, Juan. "Molecular characterization of chicken repetitive DNA sequences." Click to view the E-thesis via HKUTO, 2003. http://sunzi.lib.hku.hk/hkuto/record/B42577287.

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Books on the topic "Repetitive DNA sequence"

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Repetitive DNA. Basel: Karger, 2012.

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Repetitive DNA Sequences. MDPI, 2020. http://dx.doi.org/10.3390/books978-3-03928-367-5.

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Bacterial Integrative Mobile Genetic Elements. Taylor & Francis Group, 2013.

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Book chapters on the topic "Repetitive DNA sequence"

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Srinivasa, K. G., M. Jagadish, K. R. Venugopal, and L. M. Patnaik. "Non-repetitive DNA Sequence Compression Using Memoization." In Biological and Medical Data Analysis, 402–12. Berlin, Heidelberg: Springer Berlin Heidelberg, 2006. http://dx.doi.org/10.1007/11946465_36.

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Kobayashi, Takehiko. "Genome Instability of Repetitive Sequence: Lesson from the Ribosomal RNA Gene Repeat." In DNA Replication, Recombination, and Repair, 235–47. Tokyo: Springer Japan, 2016. http://dx.doi.org/10.1007/978-4-431-55873-6_10.

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Shapiro, James A. "A Twenty-First Century View of Evolution: Genome System Architecture, Repetitive DNA, and Natural Genetic Engineering." In Structural Approaches to Sequence Evolution, 129–47. Berlin, Heidelberg: Springer Berlin Heidelberg, 2007. http://dx.doi.org/10.1007/978-3-540-35306-5_6.

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Versalovic, James, Frans J. de Bruijn, and James R. Lupski. "Repetitive Sequence-based PCR (rep-PCR) DNA Fingerprinting of Bacterial Genomes." In Bacterial Genomes, 437–54. Boston, MA: Springer US, 1998. http://dx.doi.org/10.1007/978-1-4615-6369-3_34.

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Epplen, Jörg T., and Roland Studer. "On Interspersed Repetitive DNA Sequences in Animals." In Trends in Chromosome Research, 6–18. Berlin, Heidelberg: Springer Berlin Heidelberg, 1990. http://dx.doi.org/10.1007/978-3-662-10621-1_2.

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Epplen, J. T., and A. Epplen-Haupt. "Aspects of Tandemly Organized, Repetitive Sequences in Chromosomal DNA." In Some Aspects of Chromosome Structure and Functions, 1–10. Dordrecht: Springer Netherlands, 2002. http://dx.doi.org/10.1007/978-94-010-0334-6_1.

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Tautz, Diethard. "Notes on the definition and nomenclature of tandemly repetitive DNA sequences." In DNA Fingerprinting: State of the Science, 21–28. Basel: Birkhäuser Basel, 1993. http://dx.doi.org/10.1007/978-3-0348-8583-6_2.

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Lovett, Susan T. "Misalignment-Mediated Mutations and Genetic Rearrangements at Repetitive DNA Sequences." In The Bacterial Chromosome, 449–64. Washington, DC, USA: ASM Press, 2014. http://dx.doi.org/10.1128/9781555817640.ch25.

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Miklos, George L. Gabor. "Localized Highly Repetitive DNA Sequences in Vertebrate and Invertebrate Genomes." In Molecular Evolutionary Genetics, 241–321. Boston, MA: Springer US, 1985. http://dx.doi.org/10.1007/978-1-4684-4988-4_4.

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Heslop-Harrison, J. S. "RNA, genes, genomes and chromosomes: repetitive DNA sequences in plants." In Chromosomes Today, 45–56. Basel: Birkhäuser Basel, 2000. http://dx.doi.org/10.1007/978-3-0348-8484-6_4.

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Conference papers on the topic "Repetitive DNA sequence"

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Sahingil, Mehmet Cihan, and Yakup Ozkazanc. "Visualization of repetitive DNA sequence regions via Short Time Fourier Transform." In 2012 20th Signal Processing and Communications Applications Conference (SIU). IEEE, 2012. http://dx.doi.org/10.1109/siu.2012.6204706.

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Liddell, M. B., D. S. Anson, D. P. Lillicrap, and I. R. Peake. "SEARCH FOR AND USE OF RESTRICTION FRAGMENT LENGTH POLYMORPHISMS (RFLPs) IN AND AROUND THE HUMAN FACTOR IX GENE." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1644078.

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5 previously described RFLPs within the factor IX gene have been used for family studies (carrier detection) in 10 haemophilia B kindred. In all DNA from 91 individuals, including 25 obligate or possible carriers, was analysed by digestion with TaqI and XmnI and probing with the intragenomic probe VIII (all probes were provided by Professor G. G. Brownlee, Oxford). When noninformative, additional RFLPs (DdeI;probe XIII and MspI;probe II) were used. Of 12 possible carriers, 11 were diagnosed (6 as carriers, 5 normal). Of the confirmed carriers (6 diagnosed, 13 obligate) 15 were informative (het
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Nauli, Tigor. "Detection of repetitive nucleotides in DNA sequences." In 2017 International Conference on Innovative and Creative Information Technology (ICITech). IEEE, 2017. http://dx.doi.org/10.1109/innocit.2017.8319151.

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Srinivasa, K. G., M. Jagadish, K. R. Venugopal, and L. M. Patnaik. "Efficient Compression of non-repetitive DNA sequences using Dynamic Programming." In 2006 International Conference on Advanced Computing and Communications. IEEE, 2006. http://dx.doi.org/10.1109/adcom.2006.4289956.

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He, Dan. "Using Suffix Tree to Discover Complex Repetitive Patterns in DNA Sequences." In Conference Proceedings. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE, 2006. http://dx.doi.org/10.1109/iembs.2006.260445.

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He, Dan. "Using Suffix Tree to Discover Complex Repetitive Patterns in DNA Sequences." In Conference Proceedings. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE, 2006. http://dx.doi.org/10.1109/iembs.2006.4398194.

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Bollati, Valentina, Sonia Fabris, Fortunato Morabito, Luca Agnelli, Valeria Motta, Giovanna Cutrona, Massimo Gentile, et al. "Abstract 181: Biological and clinical relevance of quantitative global methylation in repetitive DNA sequences in B-cell chronic lymphocytic leukemia." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-181.

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Reports on the topic "Repetitive DNA sequence"

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Gupta, G., S. V. Santhana Mariappan, X. Chen, P. Catasti, L. A. III Silks, R. K. Moyzis, E. M. Bradbury, and A. E. Garcia. Structural biology of disease-associated repetitive DNA sequences and protein-DNA complexes involved in DNA damage and repair. Office of Scientific and Technical Information (OSTI), July 1997. http://dx.doi.org/10.2172/505319.

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