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Relevant bibliographies by topics / RNA helicase A

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Academic literature on the topic 'RNA helicase A'

Author: Grafiati

Published: 4 June 2021

Last updated: 12 February 2022

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Journal articles on the topic "RNA helicase A"

1

Shi, Rui-Zhu, Yuan-Qing Pan, and Li Xing. "RNA Helicase A Regulates the Replication of RNA Viruses." Viruses 13, no. 3 (2021): 361. http://dx.doi.org/10.3390/v13030361.

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The RNA helicase A (RHA) is a member of DExH-box helicases and characterized by two double-stranded RNA binding domains at the N-terminus. RHA unwinds double-stranded RNA in vitro and is involved in RNA metabolisms in the cell. RHA is also hijacked by a variety of RNA viruses to facilitate virus replication. Herein, this review will provide an overview of the role of RHA in the replication of RNA viruses.

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2

Robert-Paganin, Julien, Stéphane Réty, and Nicolas Leulliot. "Regulation of DEAH/RHA Helicases by G-Patch Proteins." BioMed Research International 2015 (2015): 1–9. http://dx.doi.org/10.1155/2015/931857.

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RNA helicases from the DEAH/RHA family are present in all the processes of RNA metabolism. The function of two helicases from this family, Prp2 and Prp43, is regulated by protein partners containing a G-patch domain. The G-patch is a glycine-rich domain discovered by sequence alignment, involved in protein-protein and protein-nucleic acid interaction. Although it has been shown to stimulate the helicase’s enzymatic activities, the precise role of the G-patch domain remains unclear. The role of G-patch proteins in the regulation of Prp43 activity has been studied in the two biological processes

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Donsbach, Pascal, and Dagmar Klostermeier. "Regulation of RNA helicase activity: principles and examples." Biological Chemistry 402, no. 5 (2021): 529–59. http://dx.doi.org/10.1515/hsz-2020-0362.

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Abstract RNA helicases are a ubiquitous class of enzymes involved in virtually all processes of RNA metabolism, from transcription, mRNA splicing and export, mRNA translation and RNA transport to RNA degradation. Although ATP-dependent unwinding of RNA duplexes is their hallmark reaction, not all helicases catalyze unwinding in vitro, and some in vivo functions do not depend on duplex unwinding. RNA helicases are divided into different families that share a common helicase core with a set of helicase signature motives. The core provides the active site for ATP hydrolysis, a binding site for no

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Wu, Yuliang. "Unwinding and Rewinding: Double Faces of Helicase?" Journal of Nucleic Acids 2012 (2012): 1–14. http://dx.doi.org/10.1155/2012/140601.

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Helicases are enzymes that use ATP-driven motor force to unwind double-stranded DNA or RNA. Recently, increasing evidence demonstrates that some helicases also possess rewinding activity—in other words, they can anneal two complementary single-stranded nucleic acids. All five members of the human RecQ helicase family, helicase PIF1, mitochondrial helicase TWINKLE, and helicase/nuclease Dna2 have been shown to possess strand-annealing activity. Moreover, two recently identified helicases—HARP and AH2 have only ATP-dependent rewinding activity. These findings not only enhance our understanding o

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Morozov, Sergey Y., Ekaterina A. Lazareva, and Andrey G. Solovyev. "RNA helicase domains of viral origin in proteins of insect retrotransposons: possible source for evolutionary advantages." PeerJ 5 (August 16, 2017): e3673. http://dx.doi.org/10.7717/peerj.3673.

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Recently, a novel phenomenon of horizontal gene transfer of helicase-encoding sequence from positive-stranded RNA viruses to LINE transposons in insect genomes was described. TRAS family transposons encoding an ORF2 protein, which comprised all typical functional domains and an additional helicase domain, were found to be preserved in many families during the evolution of the order Lepidoptera. In the present paper, in species of orders Hemiptera and Orthoptera, we found helicase domain-encoding sequences integrated into ORF1 of retrotransposons of the Jockey family. RNA helicases encoded by t

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Seo, Mihwa, Keunhee Seo, Wooseon Hwang, et al. "RNA helicase HEL-1 promotes longevity by specifically activating DAF-16/FOXO transcription factor signaling in Caenorhabditis elegans." Proceedings of the National Academy of Sciences 112, no. 31 (2015): E4246—E4255. http://dx.doi.org/10.1073/pnas.1505451112.

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The homeostatic maintenance of the genomic DNA is crucial for regulating aging processes. However, the role of RNA homeostasis in aging processes remains unknown. RNA helicases are a large family of enzymes that regulate the biogenesis and homeostasis of RNA. However, the functional significance of RNA helicases in aging has not been explored. Here, we report that a large fraction of RNA helicases regulate the lifespan of Caenorhabditis elegans. In particular, we show that a DEAD-box RNA helicase, helicase 1 (HEL-1), promotes longevity by specifically activating the DAF-16/forkhead box O (FOXO

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Cargill, Michael, Rasika Venkataraman, and Stanley Lee. "DEAD-Box RNA Helicases and Genome Stability." Genes 12, no. 10 (2021): 1471. http://dx.doi.org/10.3390/genes12101471.

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DEAD-box RNA helicases are important regulators of RNA metabolism and have been implicated in the development of cancer. Interestingly, these helicases constitute a major recurring family of RNA-binding proteins important for protecting the genome. Current studies have provided insight into the connection between genomic stability and several DEAD-box RNA helicase family proteins including DDX1, DDX3X, DDX5, DDX19, DDX21, DDX39B, and DDX41. For each helicase, we have reviewed evidence supporting their role in protecting the genome and their suggested mechanisms. Such helicases regulate the exp

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Chamot, Danuta, Wendy C. Magee, Esther Yu, and George W. Owttrim. "A Cold Shock-Induced Cyanobacterial RNA Helicase." Journal of Bacteriology 181, no. 6 (1999): 1728–32. http://dx.doi.org/10.1128/jb.181.6.1728-1732.1999.

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ABSTRACT The ability to modify RNA secondary structure is crucial for numerous cellular processes. We have characterized two RNA helicase genes, crhB and crhC, which are differentially expressed in the cyanobacterium Anabaena sp. strain PCC 7120. crhC transcription is limited specifically to cold shock conditions while crhB is expressed under a variety of conditions, including enhanced expression in the cold. This implies that both RNA helicases are involved in the cold acclimation process in cyanobacteria; however, they presumably perform different roles in this adaptation. Although both CrhB

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9

Gilman, Benjamin, Pilar Tijerina, and Rick Russell. "Distinct RNA-unwinding mechanisms of DEAD-box and DEAH-box RNA helicase proteins in remodeling structured RNAs and RNPs." Biochemical Society Transactions 45, no. 6 (2017): 1313–21. http://dx.doi.org/10.1042/bst20170095.

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Structured RNAs and RNA–protein complexes (RNPs) fold through complex pathways that are replete with misfolded traps, and many RNAs and RNPs undergo extensive conformational changes during their functional cycles. These folding steps and conformational transitions are frequently promoted by RNA chaperone proteins, notably by superfamily 2 (SF2) RNA helicase proteins. The two largest families of SF2 helicases, DEAD-box and DEAH-box proteins, share evolutionarily conserved helicase cores, but unwind RNA helices through distinct mechanisms. Recent studies have advanced our understanding of how th

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Du Pont, Kelly E., Russell B. Davidson, Martin McCullagh, and Brian J. Geiss. "Motif V regulates energy transduction between the flavivirus NS3 ATPase and RNA-binding cleft." Journal of Biological Chemistry 295, no. 6 (2019): 1551–64. http://dx.doi.org/10.1074/jbc.ra119.011922.

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The unwinding of dsRNA intermediates is critical for the replication of flavivirus RNA genomes. This activity is provided by the C-terminal helicase domain of viral nonstructural protein 3 (NS3). As a member of the superfamily 2 (SF2) helicases, NS3 requires the binding and hydrolysis of ATP/NTP to translocate along and unwind double-stranded nucleic acids. However, the mechanism of energy transduction between the ATP- and RNA-binding pockets is not well-understood. Previous molecular dynamics simulations conducted by our group have identified Motif V as a potential “communication hub” for thi

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Dissertations / Theses on the topic "RNA helicase A"

1

Fritz, Sarah E. "Molecular basis of the DExH-box RNA helicase RNA helicase A (RHA/DHX9) in eukaryotic protein synthesis." The Ohio State University, 2015. http://rave.ohiolink.edu/etdc/view?acc_num=osu1437413252.

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Ranji, Arnaz K. "Mechanistic insights into translational modulation of selected RNAs by RNA helicase A." The Ohio State University, 2011. http://rave.ohiolink.edu/etdc/view?acc_num=osu1299537544.

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Hahn, Daniela. "Brr2 RNA helicase and its protein and RNA interactions." Thesis, University of Edinburgh, 2011. http://hdl.handle.net/1842/5775.

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The dynamic rearrangements of RNA and protein complexes and the fidelity of pre-mRNA splicing are governed by DExD/H-box ATPases. One of the spliceosomal ATPases, Brr2, is believed to facilitate conformational rearrangements during spliceosome activation and disassembly. It features an unusual architecture, with two consecutive helicase-cassettes, each comprising a helicase and a Sec63 domain. Only the N-terminal cassette exhibits catalytic activity. By contrast, the C-terminal half of Brr2 engages in protein interactions. Amongst interacting proteins are the Prp2 and Prp16 helicases. The work

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Kujat, Choy Sonya Louise. "A redox-regulated RNA helicase gene." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 2001. http://www.collectionscanada.ca/obj/s4/f2/dsk3/ftp04/NQ60315.pdf.

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Magee, Wendy Colleen. "Characterization of a cyanobacterial RNA helicase gene." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 1997. http://www.collectionscanada.ca/obj/s4/f2/dsk3/ftp04/mq22631.pdf.

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Grierson, Patrick Michael. "The BLM helicase facilitates RNA polymerase I-mediated ribosomal RNA transcription." The Ohio State University, 2012. http://rave.ohiolink.edu/etdc/view?acc_num=osu1337865492.

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Putnam, Andrea A. "MECHANISM OF RNA DUPLEX UNWINDING BY THE OLIGOMERIC DEAD-BOX RNA HELICASE DED1P." Case Western Reserve University School of Graduate Studies / OhioLINK, 2016. http://rave.ohiolink.edu/etdc/view?acc_num=case1449225623.

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Yu, Esther Huiting. "Characterization of a cold shock cyanobacterial RNA helicase protein." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 1999. http://www.collectionscanada.ca/obj/s4/f2/dsk1/tape7/PQDD_0004/MQ40129.pdf.

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Williams, Margaret Fairman. "Biochemical Characterization of the DExH/D RNA Helicase NPH-II." Case Western Reserve University School of Graduate Studies / OhioLINK, 2009. http://rave.ohiolink.edu/etdc/view?acc_num=case1227651466.

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Carter, Christie. "The RNA Helicase p68 Regulates Transcription by Facilitating Chromatin Remodeling." Digital Archive @ GSU, 2009. http://digitalarchive.gsu.edu/biology_diss/60.

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P68 is a prototypical member of the DEAD box RNA helicase family. Implicated in numerous functions such as cell proliferation, cancer metastasis, transcription regulation and pre-mRNA spllicing, p68 is a multifunctional protein whose roles are still not completely understood. In the studies presented, we found that p68 was an important regulator of numerous cancer related genes. This study focuses on the cancer related genes Snail and hTERT. We show that p68 binds to the promoter and a downstream region within each gene, suggesting that p68 operates via the same mechanism with both genes.

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Books on the topic "RNA helicase A"

1

Jankowsky, Eckhard. RNA helicases. Royal Society of Chemistry, 2010.

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2

Jankowsky, Eckhard, ed. RNA Helicases. Royal Society of Chemistry, 2010. http://dx.doi.org/10.1039/9781849732215.

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Helicases: Methods and protocols. Humana Press, 2010.

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RNA Helicases. Elsevier Science & Technology Books, 2012.

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5

RNA helicases. Elsevier, 2012. http://dx.doi.org/10.1016/c2010-0-68849-3.

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6

Bensimon, David, Vincent Croquette, Jean-François Allemand, Xavier Michalet, and Terence Strick. Single-Molecule Studies of Nucleic Acids and Their Proteins. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198530923.001.0001.

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This book presents a comprehensive overview of the foundations of single-molecule studies, based on manipulation of the molecules and observation of these with fluorescent probes. It first discusses the forces present at the single-molecule scale, the methods to manipulate them, and their pros and cons. It goes on to present an introduction to single-molecule fluorescent studies based on a quantum description of absorption and emission of radiation due to Einstein. Various considerations in the study of single molecules are introduced (including signal to noise, non-radiative decay, triplet st

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Book chapters on the topic "RNA helicase A"

1

Schomburg, Dietmar, and Ida Schomburg. "RNA helicase 3.6.4.13." In Class 3.4–6 Hydrolases, Lyases, Isomerases, Ligases. Springer Berlin Heidelberg, 2013. http://dx.doi.org/10.1007/978-3-642-36260-6_25.

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Zhang, Suisheng, and Frank Grosse. "Molecular Characterization of Nuclear DNA Helicase II (RNA Helicase A)." In Methods in Molecular Biology. Humana Press, 2009. http://dx.doi.org/10.1007/978-1-60327-355-8_21.

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3

Pause, Arnim, and Nahum Sonenberg. "RNA Helicase Activity in Translation Initiation in Eukaryotes." In The Translational Apparatus. Springer US, 1993. http://dx.doi.org/10.1007/978-1-4615-2407-6_21.

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Marecki, John C., Alicia K. Byrd, and Kevin D. Raney. "Identifying RNA Helicase Inhibitors Using Duplex Unwinding Assays." In Methods in Molecular Biology. Springer US, 2020. http://dx.doi.org/10.1007/978-1-0716-0935-4_4.

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Booy, Evan P., Ewan K. S. McRae, and Sean A. McKenna. "Biochemical Characterization of G4 Quadruplex Telomerase RNA Unwinding by the RNA Helicase RHAU." In Methods in Molecular Biology. Springer New York, 2014. http://dx.doi.org/10.1007/978-1-4939-2214-7_9.

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Krause, Linda, and Dagmar Klostermeier. "Probing RNA Helicase Conformational Changes by Single-Molecule FRET Microscopy." In Methods in Molecular Biology. Springer US, 2020. http://dx.doi.org/10.1007/978-1-0716-0935-4_8.

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Nicol, Samantha M., and Frances V. Fuller-Pace. "Analysis of the RNA Helicase p68 (Ddx5) as a Transcriptional Regulator." In Methods in Molecular Biology. Humana Press, 2009. http://dx.doi.org/10.1007/978-1-60327-355-8_19.

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Maurya, Bhawana, Satya Surabhi, Ashim Mukherjee, and Mousumi Mutsuddi. "Maheshvara, a Conserved RNA Helicase, Regulates Notch Signaling in Drosophila melanogaster." In Advances in Experimental Medicine and Biology. Springer International Publishing, 2020. http://dx.doi.org/10.1007/978-3-030-36422-9_5.

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Kaminker, Ilia, and Daniella Goldfarb. "ATPase Site Configuration of the RNA Helicase DbpA Probed by ENDOR Spectroscopy." In Methods in Molecular Biology. Springer New York, 2014. http://dx.doi.org/10.1007/978-1-4939-2214-7_10.

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Chen, Chia-Yen, Venkat R. K. Yedavalli, and Kuan-Teh Jeang. "A Method to Study the Role of DDX3 RNA Helicase in HIV-1." In Methods in Molecular Biology. Humana Press, 2009. http://dx.doi.org/10.1007/978-1-60327-355-8_20.

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Conference papers on the topic "RNA helicase A"

1

Grierson, Patrick, Kate Lillard, Gregory Behbehani, et al. "Abstract PR3: The BLM helicase facilitates RNA polymerase l-mediated ribosomal RNA transcription." In Abstracts: Second AACR International Conference on Frontiers in Basic Cancer Research--Sep 14-18, 2011; San Francisco, CA. American Association for Cancer Research, 2011. http://dx.doi.org/10.1158/1538-7445.fbcr11-pr3.

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Erkizan, Hayriye Verda, Kamal Sajwan, Maksymilian Chruszcz, et al. "Abstract 2747: EWS-FLI1 reduces RNA Helicase A activity." In Proceedings: AACR 104th Annual Meeting 2013; Apr 6-10, 2013; Washington, DC. American Association for Cancer Research, 2013. http://dx.doi.org/10.1158/1538-7445.am2013-2747.

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Wang, Daojing, and Zhi Hu. "Abstract 2016: Role of RNA helicase p68 in breast cancer." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-2016.

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4

Loeb, David M., Breelyn A. Wilky, Catherine Kim, Elizabeth Montgomery, and Venu Raman. "Abstract A77: RNA helicase DDX3 – A novel therapeutic target in sarcoma." In Abstracts: AACR Special Conference: Pediatric Cancer at the Crossroads: Translating Discovery into Improved Outcomes; November 3-6, 2013; San Diego, CA. American Association for Cancer Research, 2014. http://dx.doi.org/10.1158/1538-7445.pedcan-a77.

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Afifi, Marwa, Breelyn A. Wilky, Catherine Kim, Venu Raman, and David Loeb. "Abstract 4170: The RNA helicase, DDX3, modulates DNA damage repair in Ewing sarcoma." In Proceedings: AACR Annual Meeting 2018; April 14-18, 2018; Chicago, IL. American Association for Cancer Research, 2018. http://dx.doi.org/10.1158/1538-7445.am2018-4170.

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Wang, Daojing. "Abstract 5110: RNA helicase p68 is a new marker for breast cancer heterogeneity." In Proceedings: AACR 102nd Annual Meeting 2011‐‐ Apr 2‐6, 2011; Orlando, FL. American Association for Cancer Research, 2011. http://dx.doi.org/10.1158/1538-7445.am2011-5110.

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Suwa, A., M. Hirakata, T. Nojima, S. Satoh, T. Nakajima, and T. Mimori. "THU0066 Autoantigenic epitopes targeted by autoantibodies to rna helicase a in systemic lupus erythematosus." In Annual European Congress of Rheumatology, Annals of the rheumatic diseases ARD July 2001. BMJ Publishing Group Ltd and European League Against Rheumatism, 2001. http://dx.doi.org/10.1136/annrheumdis-2001.910.

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Valentin-Vega, Yasmine A., Matthew Parker, Michael Rusch, et al. "Abstract PR11: Medulloblastoma-associated mutations in the DEAD box RNA helicase DDX3X impair protein translation." In Abstracts: Third AACR International Conference on Frontiers in Basic Cancer Research - September 18-22, 2013; National Harbor, MD. American Association for Cancer Research, 2013. http://dx.doi.org/10.1158/1538-7445.fbcr13-pr11.

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Zoppoli, Gabriele, Marie Regairaz, Elisabetta Leo, William C. Reinhold, and Yves Pommier. "Abstract 4693: The putative DNA/RNA Helicase Schlafen-11 sensitizes cancer cells to topoisomerase I inhibitors." In Proceedings: AACR 103rd Annual Meeting 2012‐‐ Mar 31‐Apr 4, 2012; Chicago, IL. American Association for Cancer Research, 2012. http://dx.doi.org/10.1158/1538-7445.am2012-4693.

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Voss, Marise R. Heerma van, Farhad Vesuna, Guus M. Bol, Paul J. van Diest, and Venu Raman. "Abstract 3812: Targeting BRCA1-deficient breast cancer by inhibition of the DEAD box RNA helicase DDX3X." In Proceedings: AACR Annual Meeting 2014; April 5-9, 2014; San Diego, CA. American Association for Cancer Research, 2014. http://dx.doi.org/10.1158/1538-7445.am2014-3812.

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Reports on the topic "RNA helicase A"

1

Raman, Venu, and Yoshinori Kato. A Novel RNA Helicase Inhibitor to Treat Breast Cancer. Defense Technical Information Center, 2012. http://dx.doi.org/10.21236/ada570968.

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Raman, Venu, and Yoshinori Kato. A Novel RNA Helicase Inhibitor to Treat Breast Cancer. Defense Technical Information Center, 2013. http://dx.doi.org/10.21236/ada593917.

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Raman, Venu. A Novel RNA Helicase Inhibitor to Treat Breast Cancer. Defense Technical Information Center, 2011. http://dx.doi.org/10.21236/ada550880.

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Wang, Daojing, Jing Huang, and Zhi Hu. RNA Helicase DDX5 Regulates MicroRNA Expression and Contributes to Cytoskeletal Reorganization in Basal Breast Cancer Cells. Office of Scientific and Technical Information (OSTI), 2011. http://dx.doi.org/10.2172/1062099.

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