Relevant bibliographies by topics / Rolling circle replication

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  2. Dissertations / Theses
  3. Book chapters

Academic literature on the topic 'Rolling circle replication'

Author: Grafiati
Published: 4 June 2021
Last updated: 29 January 2023

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Journal articles on the topic "Rolling circle replication"

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Ling, Feng, and Minoru Yoshida. "Rolling-Circle Replication in Mitochondrial DNA Inheritance: Scientific Evidence and Significance from Yeast to Human Cells." Genes 11, no. 5 (2020): 514. http://dx.doi.org/10.3390/genes11050514.

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Studies of mitochondrial (mt)DNA replication, which forms the basis of mitochondrial inheritance, have demonstrated that a rolling-circle replication mode exists in yeasts and human cells. In yeast, rolling-circle mtDNA replication mediated by homologous recombination is the predominant pathway for replication of wild-type mtDNA. In human cells, reactive oxygen species (ROS) induce rolling-circle replication to produce concatemers, linear tandem multimers linked by head-to-tail unit-sized mtDNA that promote restoration of homoplasmy from heteroplasmy. The event occurs ahead of mtDNA replicatio
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Khan, S. A. "Rolling-circle replication of bacterial plasmids." Microbiology and Molecular Biology Reviews 61, no. 4 (1997): 442–55. http://dx.doi.org/10.1128/mmbr.61.4.442-455.1997.

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Many bacterial plasmids replicate by a rolling-circle (RC) mechanism. Their replication properties have many similarities to as well as significant differences from those of single-stranded DNA (ssDNA) coliphages, which also replicate by an RC mechanism. Studies on a large number of RC plasmids have revealed that they fall into several families based on homology in their initiator proteins and leading-strand origins. The leading-strand origins contain distinct sequences that are required for binding and nicking by the Rep proteins. Leading-strand origins also contain domains that are required
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Khan, Saleem A. "Plasmid rolling-circle replication: recent developments." Molecular Microbiology 37, no. 3 (2002): 477–84. http://dx.doi.org/10.1046/j.1365-2958.2000.02001.x.

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Khan, S. A. "Rolling-circle replication of bacterial plasmids." Microbiology and molecular biology reviews : MMBR 61, no. 4 (1997): 442–55. http://dx.doi.org/10.1128/.61.4.442-455.1997.

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Gregorova, Daniela, Jitka Matiasovicova, Alena Sebkova, Marcela Faldynova, and Ivan Rychlik. "Salmonella entericasubsp.entericaserovar Enteritidis harbours ColE1, ColE2, and rolling-circle-like replicating plasmids." Canadian Journal of Microbiology 50, no. 2 (2004): 107–12. http://dx.doi.org/10.1139/w03-113.

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Using DNA hybridization, at least three distinct groups of low molecular mass plasmids were identified in Salmonella enterica subsp. enterica serovar Enteritidis. After sequencing representative plasmids from each group, we concluded that they belonged to ColE1, ColE2, and rolling-circle-like replicating plasmids. Plasmid pK (4245 bp) is a representative of widely distributed ColE1 plasmids. Plasmid pP (4301 bp) is homologous to ColE2 plasmids and was present predominantly in single-stranded DNA form. The smallest plasmids pJ (2096 bp) and pB (1983 bp) were classified as rolling-circle-like re
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Backert, S., P. Dörfel, R. Lurz, and T. Börner. "Rolling-circle replication of mitochondrial DNA in the higher plant Chenopodium album (L.)." Molecular and Cellular Biology 16, no. 11 (1996): 6285–94. http://dx.doi.org/10.1128/mcb.16.11.6285.

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The mitochondrial genomes of higher plants are larger and more complex than those of all other groups of organisms. We have studied the in vivo replication of chromosomal and plasmid mitochondrial DNAs prepared from a suspension culture and whole plants of the dicotyledonous higher plant Chenopodium album (L.). Electron microscopic studies revealed sigma-shaped, linear, and open circular molecules (subgenomic circles) of variable size as well as a minicircular plasmid of 1.3 kb (mp1). The distribution of single-stranded mitochondrial DNA in the sigma structures and the detection of entirely si
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Espinosa, Manuel, Gloria del Solar, Fernando Rojo, and Juan C. Alonso. "Plasmid rolling circle replication and its control." FEMS Microbiology Letters 130, no. 2-3 (1995): 111–20. http://dx.doi.org/10.1111/j.1574-6968.1995.tb07707.x.

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Okamoto, Haruko, Taka-aki Watanabe, and Takashi Horiuchi. "Double rolling circle replication (DRCR) is recombinogenic." Genes to Cells 16, no. 5 (2011): 503–13. http://dx.doi.org/10.1111/j.1365-2443.2011.01507.x.

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Rivera-Madrinan, Felipe, Katherine Di Iorio, and Paul G. Higgs. "Rolling Circles as a Means of Encoding Genes in the RNA World." Life 12, no. 9 (2022): 1373. http://dx.doi.org/10.3390/life12091373.

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The rolling circle mechanism found in viroids and some RNA viruses is a likely way that replication could have begun in the RNA World. Here, we consider simulations of populations of protocells, each containing multiple copies of rolling circle RNAs that can replicate non-enzymatically. The mechanism requires the presence of short self-cleaving ribozymes such as hammerheads, which can cleave and re-circularize RNA strands. A rolling circle must encode a hammerhead and the complement of a hammerhead, so that both plus and minus strands can cleave. Thus, the minimal functional length is twice th
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Wright, Laurel D., and Alan D. Grossman. "Autonomous Replication of the Conjugative Transposon Tn916." Journal of Bacteriology 198, no. 24 (2016): 3355–66. http://dx.doi.org/10.1128/jb.00639-16.

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ABSTRACTIntegrative and conjugative elements (ICEs), also known as conjugative transposons, are self-transferable elements that are widely distributed among bacterial phyla and are important drivers of horizontal gene transfer. Many ICEs carry genes that confer antibiotic resistances to their host cells and are involved in the dissemination of these resistance genes. ICEs reside in host chromosomes but under certain conditions can excise to form a plasmid that is typically the substrate for transfer. A few ICEs are known to undergo autonomous replication following activation. However, it is no
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Dissertations / Theses on the topic "Rolling circle replication"

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Arbore, C. "Mechanisms and functions of molecular interactions during plasmid rolling circle replication." Thesis, University College London (University of London), 2013. http://discovery.ucl.ac.uk/1414231/.

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The system under investigation in this project is the replication of plasmid DNA belonging to the pT181 family from the Gram-positive Staphylococcus aureus. This plasmid replicates through an asymmetric rolling circle mechanism, initiated by a plasmid-encoded protein that nicks the supercoiled plasmid allowing unidirectional unwinding by the helicase and elongation by a polymerase. The proteins involved in this process are the replication initiator protein, Staphylococcus aureus RepD, the ATP-driven 3’ to 5’ helicase, Bacillus Stearothermophilus PcrA, and the S. aureus DNA polymerase III. The
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Galal, Wiebke [Verfasser]. "Working towards understanding DNA replication : coupling of a 3'-5' helicase with a replicative polymerase on a rolling circle substrate / Wiebke Galal." Konstanz : Bibliothek der Universität Konstanz, 2012. http://d-nb.info/1027269273/34.

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Pirlo, Steven Dominic. "Identification of viral-based replicating vectors suitable for the development of a sugarcane bioreactor." Thesis, Queensland University of Technology, 2007. https://eprints.qut.edu.au/16548/1/Steven_Dominic_Pirlo_Thesis.pdf.

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The circular, single-stranded (ss) DNA genomes of plant viruses in the families Geminiviridae and Nanoviridae are replicated within the nucleus of a host cell by a mechanism called rolling circle replication (RCR). Although this process relies almost exclusively on the replication machinery of the host cell, initiation occurs via the interaction of the viral replication initiation protein (Rep) with regulatory DNA sequences within the viral genome. The use of a virus-based episomal amplification technology as a plant bioreactor platform exploits the process of Rep-mediated RCR for the high-lev
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Pirlo, Steven Dominic. "Identification of viral-based replicating vectors suitable for the development of a sugarcane bioreactor." Queensland University of Technology, 2007. http://eprints.qut.edu.au/16548/.

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The circular, single-stranded (ss) DNA genomes of plant viruses in the families Geminiviridae and Nanoviridae are replicated within the nucleus of a host cell by a mechanism called rolling circle replication (RCR). Although this process relies almost exclusively on the replication machinery of the host cell, initiation occurs via the interaction of the viral replication initiation protein (Rep) with regulatory DNA sequences within the viral genome. The use of a virus-based episomal amplification technology as a plant bioreactor platform exploits the process of Rep-mediated RCR for the high-lev
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Hastie, Marcus Lachlan. "In vitro activities of BBTV-REP." Thesis, Queensland University of Technology, 2001. https://eprints.qut.edu.au/37077/1/37077_Digitised%20Thesis.pdf.

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Lyle, Keenan Harris. "Comparison of plasmids from clinical Lactobacillus strains." University of the Western Cape, 2018. http://hdl.handle.net/11394/6397.

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Magister Scientiae - MSc (Biotechnology)<br>The vaginal mucosa is dominated by Gram positive, rod shaped lactobacilli which serve as a natural barrier against infection. In both healthy and BV infected women Lactobacillus crispatus and Lactobacillus jensennii has been found to be the predominant Lactobacillus species. Many studies have been conducted to assess factors influencing lactobacilli dominance in the vaginal microbiome. However, no study has evaluated the impact of plasmids on the vaginal lactobacilli. In the present study two plasmids, pLc17 and pLc4, isolated from vaginal Lactobacil
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PENIDO, Ana Flávia Batista. "Sequência completa e caracterização do plasmídeo crípico pVCM1 isolado de Salmonella enterica." Universidade Federal de Goiás, 2009. http://repositorio.bc.ufg.br/tede/handle/tde/1297.

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Made available in DSpace on 2014-07-29T15:16:38Z (GMT). No. of bitstreams: 1 Dissertacao Ana Flavia B Penido.pdf: 829056 bytes, checksum: 63d111404f5b1f9b2d136e54aad128a4 (MD5) Previous issue date: 2009-03-26<br>Samonella spp are Gram negatives bactérias belonging to Enterobacteriaceae family. S. enterica comprise about 2.500 sorovars. These sorovars can infect a broad range, including poultry, cattle, swins and humans, and are agent causative of salmonellosis an important public health issue worldwide. Small multicopy plasmids are frequently isolated from Gram negatives and Gram positives
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Shao, Tzu-Wei, and 邵子崴. "Rolling-Circle Replication Mechanism of pTA103 and Transformation System of Thermus aquaticus NTU103." Thesis, 2006. http://ndltd.ncl.edu.tw/handle/97634906174900794411.

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碩士<br>慈濟大學<br>醫學研究所<br>94<br>The complete nucleotide sequence of pTA103, a cryptic plasmid from Thermus aquaticus NTU103, has determined. pTA103 was 1,965 bp long and its G + C content was 67.53﹪. pTA103 contained two open reading frames. One of the open reading frame（orf2）shares no significant homology with protein in data bank. The other one has 50﹪similarity and 34﹪identity with RepA-like protein of pRm1132f, which is a RCR plasmid isolated from Sinorhizobium meliloti. Although in vitro functional assay of Rep was carried out without precise result, but sequence data revealed putative doubl
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Yu, Ping-Hung, and 余秉弘. "Sequence analysis and rolling circle replication mechanism of plasmid pML in Methanohalophilus mahii." Thesis, 2001. http://ndltd.ncl.edu.tw/handle/67899780396545609480.

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碩士<br>國立中興大學<br>植物學系<br>89<br>A small cryptic plasmid (2.16-kb), designated pML, was isolated from the moderately halophilic methanogen Methanohalophilus mahii SLP. Sequence analysis indicated the possibility of the two open reading frames (ORF 1, ORF 2). The predicted protein of ORF1 showed 34 % sequence identity to a putative replication protein (Rep) of pGRB1 from Halobacterium spp. Both putative proteins contained three sequence motifs (motif1, motif 2 and motif 3) that conserved in Rep proteins of rolling circle replication (RCR) mechanism. Based on the numbers of Tyr residues in the moti
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Book chapters on the topic "Rolling circle replication"

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Khan, Saleem A. "Rolling-Circle Replication." In Plasmid Biology. ASM Press, 2014. http://dx.doi.org/10.1128/9781555817732.ch4.

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Ruiz-Masó, José A., Cristina Machón, Lorena Bordanaba-Ruiseco, Manuel Espinosa, Miquel Coll, and Gloria del Solar. "Plasmid Rolling-Circle Replication." In Plasmids. ASM Press, 2015. http://dx.doi.org/10.1128/9781555818982.ch4.

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Sharma, Nivedita, and Rajrani Ruhel. "Rolling Circle Replication and Transcription Processes in Geminiviruses." In Geminiviruses. Springer International Publishing, 2019. http://dx.doi.org/10.1007/978-3-030-18248-9_2.

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Jeske, Holger. "Replication of Geminiviruses and the use of Rolling Circle Amplification for their Diagnosis." In Tomato Yellow Leaf Curl Virus Disease. Springer Netherlands, 2007. http://dx.doi.org/10.1007/978-1-4020-4769-5_8.

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del Solar, Gloria, Cris Fernández-López, José Angel Ruiz-Masó, Fabián Lorenzo-Díaz, and Manuel Espinosa. "Rolling Circle Replicating Plasmids." In Molecular Life Sciences. Springer New York, 2014. http://dx.doi.org/10.1007/978-1-4614-6436-5_567-2.

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del Solar, Gloria, Cris Fernández-López, José Angel Ruiz-Masó, Fabián Lorenzo-Díaz, and Manuel Espinosa. "Rolling Circle Replicating Plasmids." In Molecular Life Sciences. Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4614-1531-2_567.

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Fernández-López, Cris, Alicia Bravo, Sofía Ruiz-Cruz, et al. "Mobilizable Rolling-Circle Replicating Plasmids from Gram-Positive Bacteria: A Low-Cost Conjugative Transfer." In Plasmids. ASM Press, 2015. http://dx.doi.org/10.1128/9781555818982.ch15.

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Thomas, E. "Rolling Circle Replication." In Encyclopedia of Genetics. Elsevier, 2001. http://dx.doi.org/10.1006/rwgn.2001.1142.

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Bartom, E. "Rolling Circle Replication." In Brenner's Encyclopedia of Genetics. Elsevier, 2001. http://dx.doi.org/10.1016/b978-0-12-374984-0.01358-9.

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Branch, Andrea D., Kerry K. Willis, George Davatelis, and Hugh Robertson. "IN VIVO INTERMEDIATES AND THE ROLLING CIRCLE MECHANISM IN VIROID REPLICATION." In Subviral Pathogens of Plants and Animals: Viroids and Prions. Elsevier, 1985. http://dx.doi.org/10.1016/b978-0-12-470230-1.50016-5.

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