Relevant bibliographies by topics / SARS-CoV-2 genomes

Contents

  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers
  6. Reports

Academic literature on the topic 'SARS-CoV-2 genomes'

Author: Grafiati
Published: 5 June 2025
Last updated: 1 August 2025

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Journal articles on the topic "SARS-CoV-2 genomes"

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Mavzyutov, A. R., R. R. Garafutdinov, E. Yu Khalikova, et al. "The enigmas of the new coronavirus SARS-CoV-2." Biomics 13, no. 1 (2021): 75–99. http://dx.doi.org/10.31301/2221-6197.bmcs.2021-7.

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The emergence of the new SARS-CoV-2 coronavirus has given rise to many enigmas, to which there are no answers yet. However, the degree of threat to humanity, due to the fact that by the beginning of February 2021, more than 100 million people were ill in the world, of which 2 million died, led to the fact that the efforts of many researchers were aimed at combating this disease, including massive sequencing of the complete genomes of SARS-CoV-2, as this is necessary for diagnostics and prediction of the epidemiological situation, including in the long term. Currently, a fairly high level of co
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Khattak, Saadullah, Mohd Ahmar Rauf, Qamar Zaman, et al. "Genome-Wide Analysis of Codon Usage Patterns of SARS-CoV-2 Virus Reveals Global Heterogeneity of COVID-19." Biomolecules 11, no. 6 (2021): 912. http://dx.doi.org/10.3390/biom11060912.

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The ongoing outbreak of coronavirus disease COVID-19 is significantly implicated by global heterogeneity in the genome organization of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The causative agents of global heterogeneity in the whole genome of SARS-CoV-2 are not well characterized due to the lack of comparative study of a large enough sample size from around the globe to reduce the standard deviation to the acceptable margin of error. To better understand the SARS-CoV-2 genome architecture, we have performed a comprehensive analysis of codon usage bias of sixty (60) strain
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Vasilarou, Maria, Nikolaos Alachiotis, Joanna Garefalaki, Apostolos Beloukas, and Pavlos Pavlidis. "Population Genomics Insights into the First Wave of COVID-19." Life 11, no. 2 (2021): 129. http://dx.doi.org/10.3390/life11020129.

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Full-genome-sequence computational analyses of the SARS-coronavirus (CoV)-2 genomes allow us to understand the evolutionary events and adaptability mechanisms. We used population genetics analyses on human SARS-CoV-2 genomes available on 2 April 2020 to infer the mutation rate and plausible recombination events between the Betacoronavirus genomes in nonhuman hosts that may have contributed to the evolution of SARS-CoV-2. Furthermore, we localized the targets of recent and strong, positive selection during the first pandemic wave. The genomic regions that appear to be under positive selection a
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Gültekin, Visam, and Jens Allmer. "Novel perspectives for SARS-CoV-2 genome browsing." Journal of Integrative Bioinformatics 18, no. 1 (2021): 19–26. http://dx.doi.org/10.1515/jib-2021-0001.

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Abstract SARS-CoV-2 has spread worldwide and caused social, economic, and health turmoil. The first genome assembly of SARS-CoV-2 was produced in Wuhan, and it is widely used as a reference. Subsequently, more than a hundred additional SARS-CoV-2 genomes have been sequenced. While the genomes appear to be mostly identical, there are variations. Therefore, an alignment of all available genomes and the derived consensus sequence could be used as a reference, better serving the science community. Variations are significant, but representing them in a genome browser can become, especially if their
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Rouchka, Eric C., Julia H. Chariker, and Donghoon Chung. "Variant analysis of 1,040 SARS-CoV-2 genomes." PLOS ONE 15, no. 11 (2020): e0241535. http://dx.doi.org/10.1371/journal.pone.0241535.

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The severe acute respiratory syndrome-coronavirus 2 (SARS-CoV-2) viral genome is an RNA virus consisting of approximately 30,000 bases. As part of testing efforts, whole genome sequencing of human isolates has resulted in over 1,600 complete genomes publicly available from GenBank. We have performed a comparative analysis of the sequences, in order to detect common mutations within the population. Analysis of variants occurring within the assembled genomes yields 417 variants occurring in at least 1% of the completed genomes, including 229 within the 5’ untranslated region (UTR), 152 within th
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Gunadi, Hendra Wibawa, Marcellus, et al. "Full-length genome characterization and phylogenetic analysis of SARS-CoV-2 virus strains from Yogyakarta and Central Java, Indonesia." PeerJ 8 (December 21, 2020): e10575. http://dx.doi.org/10.7717/peerj.10575.

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Background Recently, SARS-CoV-2 virus with the D614G mutation has become a public concern due to rapid dissemination of this variant across many countries. Our study aims were (1) to report full-length genome sequences of SARS-CoV-2 collected from four COVID-19 patients in the Special Region of Yogyakarta and Central Java provinces, Indonesia; (2) to compare the clade distribution of full-length genome sequences from Indonesia (n = 60) from March to September 2020 and (3) to perform phylogenetic analysis of SARS-CoV-2 complete genomes from different countries, including Indonesia. Methods Whol
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Parlikar, Arohi, Kishan Kalia, Shruti Sinha, et al. "Understanding genomic diversity, pan-genome, and evolution of SARS-CoV-2." PeerJ 8 (July 17, 2020): e9576. http://dx.doi.org/10.7717/peerj.9576.

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Coronovirus disease 2019 (COVID-19) infection, which originated from Wuhan, China, has seized the whole world in its grasp and created a huge pandemic situation before humanity. Since December 2019, genomes of numerous isolates have been sequenced and analyzed for testing confirmation, epidemiology, and evolutionary studies. In the first half of this article, we provide a detailed review of the history and origin of COVID-19, followed by the taxonomy, nomenclature and genome organization of its causative agent Severe Acute Respiratory Syndrome-related Coronavirus-2 (SARS-CoV-2). In the latter
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ŞAHİNGİL, Mehmet Cihan, and Yakup OZKAZANC. "Comparison of SARS-CoV-2 Virus Variant Genomes Detected in China and the USA." Genetics & Applications 4, no. 2 (2020): 10. http://dx.doi.org/10.31383/ga.vol4iss2pp10-26.

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In the spreading period of the SARS-CoV-2 virus which is the cause of COVID-19 in the world, it is seen that the genome of the virus mutates and this mutation processes create new SARS-CoV-2 variants. In this study, we examined two variant genome groups. The first group includes the genomes of variants detected in China, while the second includes those detected in the USA. We applied the multiple sequence alignment process on these publicly available SARS-CoV-2 virus genomes and reported the obtained results. There are 87 genomes for China variants and 200 for USA variants in the used data. Th
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Shrestha, R., N. Katuwal, N. Adhikari, et al. "Whole Genome Sequence Analysis to Identify SARS-CoV-2 Variant in Nepal." Kathmandu University Medical Journal 19, no. 2 (2021): 237–42. http://dx.doi.org/10.3126/kumj.v19i2.49653.

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Background The spread of SARS-CoV-2 has become a global public health crisis. Nepal is facing the second wave of COVID-19 pandemic but, there is still a limited data on the genomic sequence of SARS-CoV-2 variants circulating in Nepal.
 Objective The objective of this study is to sequence the whole genome of SARS-CoV-2 in Nepal to detect possible mutation profiles and phylogenetic lineages of circulating SARSCoV- 2 variants.
 Method In this study, swab samples tested positive for SARS-CoV-2 were investigated. After RNA extraction, the investigation was performed through real-time PCR
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Xia, Xuhua. "Dating the Common Ancestor from an NCBI Tree of 83688 High-Quality and Full-Length SARS-CoV-2 Genomes." Viruses 13, no. 9 (2021): 1790. http://dx.doi.org/10.3390/v13091790.

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All dating studies involving SARS-CoV-2 are problematic. Previous studies have dated the most recent common ancestor (MRCA) between SARS-CoV-2 and its close relatives from bats and pangolins. However, the evolutionary rate thus derived is expected to differ from the rate estimated from sequence divergence of SARS-CoV-2 lineages. Here, I present dating results for the first time from a large phylogenetic tree with 86,582 high-quality full-length SARS-CoV-2 genomes. The tree contains 83,688 genomes with full specification of collection time. Such a large tree spanning a period of about 1.5 years
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Dissertations / Theses on the topic "SARS-CoV-2 genomes"

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GRIMALDI, ANTONIO. "AN IMPROVED GENOMIC SURVEILLANCE APPROACH TO DISSECT THE SARS-COV-2 PANDEMIC." Doctoral thesis, Università degli Studi di Milano, 2022. https://hdl.handle.net/2434/946458.

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Genomic surveillance of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the only approach to rapidly monitor and tackle emerging variants of concern (VOC) of the COVID-19 pandemic. Such scrutiny is crucial to limit the spread of VOC that might escape the immune protection conferred by vaccination strategies. It is also becoming clear now that efficient genomic surveillance would require monitoring the host gene expression to identify prognostic biomarkers of efficacy and disease progression. Here we applied an integrated workflow for RNA extracted from nasal swabs to obtain in
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Wei, Yulong. "Microbes Carry Distinct Genomic Signatures in Adaptation to Their Translation Machinery and Host Environments." Thesis, Université d'Ottawa / University of Ottawa, 2021. http://hdl.handle.net/10393/42422.

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How do bacteria grow and replicate rapidly? How do viruses and phages adapt to their host environments? Bacteria require efficient translation to grow and replicate rapidly, and translation is often rate-limited by initiation. A feature that is conserved across bacterial lineages is the Shine-Dalgarno (SD) sequence at the mRNA 5’ UTR, which pairs with the anti-SD sequence located at the 3’ end of mature 16S rRNA. Nonetheless, much about this interaction remains unclear. Chapter 2 reveals evolutionary differences between Cyanobacteria and chloroplast translation initiation using a new model (Dt
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PINZAUTI, DAVID. "Implementation of a flexible Oxford Nanopore sequencing platform for microbial genomics." Doctoral thesis, Università di Siena, 2021. http://hdl.handle.net/11365/1138520.

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Oxford Nanopore sequencing technology is slowly revolutionising the entire microbiology field. Its ease of use and cost effective approaches coupled with long reads sequencing represent an essential and powerful tool. In the present thesis I have implemented a sequencing platform based on the Oxford Nanopore technology, a flexible system suitable for both research and diagnostic fields. The first part of my work was dedicated to the optimization of a DNA extraction protocol capable of isolating high molecular weight (HMW) genomic DNA. In fact, Nanopore sequencing readouts are highly infl
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Leducq, Valentin. "Apport des outils de biologie moléculaire dans l'étude et la surveillance du SARS-CoV-2 au cours de la pandémie de COVID-19." Electronic Thesis or Diss., Sorbonne université, 2023. http://www.theses.fr/2023SORUS203.

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Dès le début de la pandémie de COVID-19, des outils de biologie moléculaire permettant la détection et l’analyse du génome du SARS-CoV-2 ont été développés et déployés à une échelle sans précédent. Les techniques de PCR ont été utilisées pour diagnostiquer quotidiennement des millions de personnes, tandis que la démocratisation du séquençage de nouvelle génération (NGS) a permis de générer rapidement des centaines de milliers de génomes viraux. Ces outils ont été une source d’information majeure dans l’étude et la compréhension de la physiopathologie du SARS-CoV-2, mais également dans le suivi
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Pires, Manuel Maria Moura Neves Moreira. "SARS-CoV-2 membrane protein: from genomic data to structural new insights." Master's thesis, 2021. https://hdl.handle.net/10216/138003.

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Sá, Ana Regina Serra. "Large-scale inveLarge-scale investigation of a COVID-19 high-incidence region of Portugal : an outbreak analysis using genomic epidemiologystigation of a COVID-19 high-incidence region of Portugal : an outbreak analysis using genomic epidemiology." Master's thesis, 2021. http://hdl.handle.net/10362/135191.

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ABSTRACT - Background Local outbreak response is highly dependent on the epidemiologic investigation (EI), which relies on subjective information to reconstruct transmission chains. This study aims to describe COVID-19 transmission chains in the light of viral genomics. Additionally, it aims to estimate the sensitivity of the EI. Methods A combination of epidemiological and viral genomic data was performed to understand COVID-19 transmission chains, in Baixo Vouga, a region with a municipality in sanitary cordon and presenting one of the highest incidence rates during the first epidemi
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Books on the topic "SARS-CoV-2 genomes"

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Genomic Epidemiology Data Infrastructure Needs for SARS-CoV-2. National Academies Press, 2020. http://dx.doi.org/10.17226/25879.

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National Academies of Sciences, Engineering, and Medicine. Genomic Epidemiology Data Infrastructure Needs for SARS-CoV-2: Modernizing Pandemic Response Strategies. National Academies Press, 2020.

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Board on Health Sciences Policy, Division on Earth and Life Studies, National Academies of Sciences, Engineering, and Medicine, Board on Life Sciences, and Health and Medicine Division. Genomic Epidemiology Data Infrastructure Needs for SARS-CoV-2: Modernizing Pandemic Response Strategies. National Academies Press, 2020.

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Board on Health Sciences Policy, Division on Earth and Life Studies, National Academies of Sciences, Engineering, and Medicine, Board on Life Sciences, and Health and Medicine Division. Genomic Epidemiology Data Infrastructure Needs for SARS-CoV-2: Modernizing Pandemic Response Strategies. National Academies Press, 2020.

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National Academies of Sciences, Engineering, and Medicine. Genomic Epidemiology Data Infrastructure Needs for SARS-CoV-2: Modernizing Pandemic Response Strategies. National Academies Press, 2020.

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Molecular Diagnostics and Biological Safety 2021. COVID-19: Epidemiology, Diagnosis and Prophylaxis: Conference Abstracts. Central Research Institute for Epidemiology, 2021. http://dx.doi.org/10.36233/978-5-6045286-2-4.

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The pandemic of the new coronavirus infection has spread to more than 200 countries. To date, over 130 million people have been affected and over 2.8 million have died. COVID-19 infection has a number of specific epidemiological and clinical features. In severe cases of the disease, acute respiratory distress syndrome develops, which is often fatal. The SARS-CoV-2 virus is susceptible to mutations, which alarms the scientific community all over the world. Therefore, scientific research in the field of COVID-19, the search for new diagnostic tools, methods for nonspecific and specific preventio
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Placencia López, Bárbara Miladys, Fernanda Vanessa Alcívar Macías, José Aníbal Sánchez Saltos, et al. Covid 19. Mawil Publicaciones de Ecuador, 2022, 2022. http://dx.doi.org/10.26820/978-9942-602-37-4.

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El siglo XXI se ha caracterizado desde sus inicios por una problemática de salud que ha afectado al mundo, que va desde un incremento de la resistencia microbiana, aumento de las enfermedades oncológicas hasta la aparición de nuevas enfermedades infecciosas emergentes y reemergentes, como ha sido la aparición de la COVID-19 a finales del pasado año. Los coronavirus son una extensa familia de virus que pueden causar enfermedades tanto en animales como en humanos. En los humanos, se sabe que varios coronavirus causan infecciones respiratorias que pueden ir desde el resfriado común hasta enfermed
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Luiz Vieira de Lima Santos, Igor. I CONBRAGEM - I CONGRESSO BRASILEIRO DE GENÉTICA MULTIDISCIPLINAR. Edited by Carliane Rebeca Coelho da Silva. Editora Science, 2021. http://dx.doi.org/10.56001/21.9786500337020.

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PREFÁCIO À 1ª EDIÇÃO A genética é uma ciência básica, mas nem por isso simples. Atualmente frente a tantos desafios impostos pela pandemia a genética tem se mostrado ferramenta fundamental na luta e no entendimento deste novo patógeno causador da COVID-19. Vários mecanismos precisam ser estudados para permitir o conhecimento dos novos desafios que acometem a sociedade pós-moderna. Muito tem se ouvido falar em desenvolvimento de vacinas, genoma sequenciado do SARS-Cov-2, resistência bacteriana, novas cepas mais agressivas surgindo, entre tantos outros atributos que são necessários para o entend
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Book chapters on the topic "SARS-CoV-2 genomes"

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Zhang, Jiapu. "SARS-CoV-2 RNA Genome." In Springer Series in Biophysics. Springer Nature Switzerland, 2023. http://dx.doi.org/10.1007/978-3-031-36773-1_23.

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Goswami, Srijan, and Ushmita Gupta Bakshi. "SARS-CoV-2 Morphology, Genomic Organisation and Lifecycle." In COVID-19 and SARS-CoV-2. CRC Press, 2022. http://dx.doi.org/10.1201/9781003178514-3.

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Sharma, Mayank. "Statistical Genomic Analysis of the SARS-CoV, MERS-CoV and SARS-CoV-2." In Advances in Intelligent Systems and Computing. Springer Singapore, 2021. http://dx.doi.org/10.1007/978-981-33-4367-2_52.

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Singh, Ashutosh, Rehan Fazal, Upasana Sahu, et al. "Zoonotic Origin, Genomic Organization, Transmission, and Mutation of SARS-CoV-2." In SARS-CoV-2 Variants and Global Population Vulnerability. Apple Academic Press, 2024. http://dx.doi.org/10.1201/9781003467939-1.

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Cuevas-Ferrando, Enric, Gloria Sánchez, and Alba Pérez-Cataluña. "SARS-CoV-2 Detection and Genome Sequencing in Urban Wastewaters." In Methods in Molecular Biology. Springer US, 2023. http://dx.doi.org/10.1007/978-1-0716-3515-5_8.

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Hughes, David A. "Weaponised Deception." In “Covid-19,” Psychological Operations, and the War for Technocracy. Springer International Publishing, 2024. http://dx.doi.org/10.1007/978-3-031-41850-1_6.

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AbstractTotalitarianism is facilitated by what Hannah Arendt calls “gigantic lies and monstrous falsehoods,” which the masses are organised to believe. This tradition has a long history, even in the West. The “Covid-19 pandemic” was a Big Lie: there is no credible epidemiological evidence to support its existence. Rather, the “pandemic” was a media-driven social phenomenon that served to deflect attention from far-reaching technocratic agendas being advanced across every area of life. “Pandemic preparedness” provides cover for building the institutional architecture of global dictatorship unde
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Davidson, Alma, Marina Parr, Franziska Totzeck, et al. "Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans." In Comparative Genomics. Springer Nature Switzerland, 2024. http://dx.doi.org/10.1007/978-3-031-58072-7_13.

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Qu, Wubin, Jiangyu Li, Haoyang Cai, and Dongsheng Zhao. "PCR Primer Design for the Rapidly Evolving SARS-CoV-2 Genome." In Methods in Molecular Biology. Springer US, 2021. http://dx.doi.org/10.1007/978-1-0716-1799-1_14.

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Somayaji, Adithi, and S. Balaji. "The Genome Sequence Analysis of SARS-CoV-2 Variants of Concern." In Global Virology IV: Viral Disease Diagnosis and Treatment Delivery in the 21st Century. Springer International Publishing, 2024. http://dx.doi.org/10.1007/978-3-031-57369-9_1.

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Abhimanyu and Chakresh Kumar Jain. "Computational Interaction Study of Immunomodulatory Plant Derivatives Against SARS-Cov-2 Mpro Target." In Phytochemical Genomics. Springer Nature Singapore, 2022. http://dx.doi.org/10.1007/978-981-19-5779-6_29.

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Conference papers on the topic "SARS-CoV-2 genomes"

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Shah, Vatsal, Love Fadia, Mohammad Hassanzadeh, Majid Ahmadi, and Jonathan Wu. "BioTwinNet: Dual-Stream Multilevel Feature Fusion for Classification of SARS-CoV-2 and Influenza Virus Variants via Genomic Image Processing." In 2025 3rd International Conference on Advancement in Computation & Computer Technologies (InCACCT). IEEE, 2025. https://doi.org/10.1109/incacct65424.2025.11011394.

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Benslimane, Fatiha M., Hebah Al Khatib, Dana Albatesh, et al. "Nanopore Sequencing SARS-CoV-2 Genome in Qatar." In Qatar University Annual Research Forum & Exhibition. Qatar University Press, 2020. http://dx.doi.org/10.29117/quarfe.2020.0289.

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Background: The current pandemic, COVID-19, is cause by an RNA Coronavirus that was recently identified as SARS-CoV-2. RNA viruses tend to have a high mutation rate; the rate is around a million times greater than that of their hosts. The mutagenic potential of the virus depends on many factors, including the fidelity of nucleic acid-replicating viral enzymes, such as SARSCoV-2 RNA dependent RNA polymerase (RdRp). The rate of mutation drives viral evolution and genome variability, consequently allowing viruses to escape the immunity of the host and develop resistance to drugs. Therefore, the c
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Kaptelova, V. V., A. S. Speranskaya, A. E. Samoilov, et al. "MUTATIONS IN THE GENOMES OF SARS-COV-2 FROM CLINICAL SAMPLES OBTAINED IN LATE MARCH-EARLY APRIL FROM PATIENTS IN MOSCOW." In Molecular Diagnostics and Biosafety. Federal Budget Institute of Science 'Central Research Institute for Epidemiology', 2020. http://dx.doi.org/10.36233/978-5-9900432-9-9-147.

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Many papers suggested that D614G mutation in the viral spike (S) protein SARS-CoV-2 can influence the ability of virus transmission. In recent work [1], it was shown D614G influences the rate of disease transmission only in combination with the P323L mutation in the viral polymerase. We have sequenced 28 full genomes of SARS-CoV-2, obtained from clinical material from patients of different ages. The analyzed isolates belong to clades B.1 (GH) and B1.1 (GR). Combinations of mutations P323L and D614G were found in all genomes. These differences can be explained by sampling: the samples for the s
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Smatti, Maria K., Yasser Al-Sarraj, Omar Albagha, and Hadi M. Yassine. "Host Genetic Variants Potentially Associated with SARS-Cov-2: A Multi-Population Analysis." In Qatar University Annual Research Forum & Exhibition. Qatar University Press, 2020. http://dx.doi.org/10.29117/quarfe.2020.0298.

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Background: Clinical outcomes of Coronavirus Disease 2019 (COVID-19), caused by the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) showed enormous inter-individual and interpopulation differences, possibly due to host genetics differences. Earlier studies identified single nucleotide polymorphisms (SNPs) associated with SARS-CoV-1 in Eastern Asian (EAS) populations. In this report, we aimed at exploring the frequency of a set of genetic polymorphisms that could affect SARS-CoV-2 susceptibility or severity, including those that were previously associated with SARS-CoV-1. Methods:
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Sun, Weitao. "Discovering SARS-CoV-2 genes and mutations adapted for humans in 2594 genomes." In 2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2021. http://dx.doi.org/10.1109/bibm52615.2021.9669705.

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"Genetic variability among 28 genomes of SARS-CoV-2 collected in Moscow in the early spring 2020." In SYSTEMS BIOLOGY AND BIOINFORMATICS (SBB-2020). Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences., 2020. http://dx.doi.org/10.18699/sbb-2020-15.

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Al Khatib, Hebah A., Fatiha M. Benslimane, Israa El Bashir, Asmaa A. Al Thani, and Hadi M. Yassine. "Within-Host Diversity of SARS-Cov-2 in COVID-19 Patients with Variable Disease Severities." In Qatar University Annual Research Forum & Exhibition. Qatar University Press, 2020. http://dx.doi.org/10.29117/quarfe.2020.0280.

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Background: The ongoing pandemic of SARS-COV-2 has already infected more than eight million people worldwide. The majority of COVID-19 patients are either asymptomatic or have mild symptoms. Yet, about 15% of the cases experience severe complications and require intensive care. Factors determining disease severity are not yet fully characterized. Aim: Here, we investigated the within-host virus diversity in COVID-19 patients with different clinical manifestations. Methods: We compared SARS-COV-2 genetic diversity in 19 mild and 27 severe cases. Viral RNA was extracted from nasopharyngeal sampl
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"Millions of SARS-CoV-2 genomes in the RAM of a regular PC: fast and efficient analysis of evolutionary changes." In Биоинформатика регуляции и структуры геномов / системная биология. ИЦиГ СО РАН, 2024. http://dx.doi.org/10.18699/bgrs2024-12.3-22.

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Smatti, Maria Khalid, Yasser Al-Sarraj, Omar Albagha, and Hadi Yassine. "Genetic Susceptibility to Infectious Diseases in the Qatari Population." In Qatar University Annual Research Forum & Exhibition. Qatar University Press, 2021. http://dx.doi.org/10.29117/quarfe.2021.0092.

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Background: Infectious diseases (IDs) account for 8% of deaths annually in Qatar, and therefore, represent a significant challenge for public health. Interestingly, the spread and severity of viral infections vary considerably between individuals and populations. The most recent example is SARS-CoV-2, which ranges from mild/asymptomatic to a severe respiratory syndrome. It has been previously reported that polymorphisms in genes linked to immunity can influence individuals’ responses to infections as observed in tuberculosis, influenza, and HIV; however, studies exploring causal host genetic v
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Azevedo, Karolayne, Raquel Barbosa, and Marcelo Fernandes. "Aprendizagem Profunda Aplicada à Classificação do SARS-CoV-2." In Congresso Brasileiro de Inteligência Computacional. SBIC, 2021. http://dx.doi.org/10.21528/cbic2021-75.

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Este artigo propõe uma técnica, baseada em aprendizado de máquina, que faz uso de uma rede neural convolucional (Convolutional Neural Network – CNN) profunda de uma dimensão (1D), destinada à classificação de genomas virais, capaz de identificar corretamente o vírus SARS-CoV-2, causador da doença COVID-19. Como entrada, foi utilizado amostras genômicas completas de DNAc (DNA complementar) do vírus da família Coronaviridae, extraídas a partir do repositório 2019 Novel Coronavirus Resource (2019nCoVR). A base de dados utilizada neste trabalho, contém 17.893 amostras de DNAc, cujo tamanho varia e
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Reports on the topic "SARS-CoV-2 genomes"

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Şeker, Muzaffer, Ali Özer, Zekeriya Tosun, Cem Korkut, and Mürsel Doğrul, eds. The Assessment Report on COVID-19 Global Outbreak. Türkiye Bilimler Akademisi, 2020. http://dx.doi.org/10.53478/tuba.2020.119.

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Abstract:
"In late December 2019, a large number of patients with unknown causes of pneumonia were reported by press from a seafood market in Wuhan, Hubei province, China. This coronavirus was originally named the 2019 new coronavirus (2019-nCoV) by the World Health Organization (WHO) on January 12, 2020. The Coronavirus Working Group (CSG) of the WHO and International Committee proposed to call the new virus SARS-CoV-2 on February 11, 2020. As a result of the samples taken from the patient, the whole genome sequence of the SARS-CoV-2 was isolated on January 7, 2020, by Chinese scientists in a short tim
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2

Şeker, Muzaffer, Ali Özer, Zekeriya Tosun, Cem Korkut, and Mürsel Doğrul, eds. COVID-19 Küresel Salgın Değerlendirme Raporu. Türkiye Bilimler Akademisi, 2020. http://dx.doi.org/10.53478/tuba.2020.118.

Full text
Abstract:
"In late December 2019, a large number of patients with unknown causes of pneumonia were reported by press from a seafood market in Wuhan, Hubei province, China. This coronavirus was originally named the 2019 new coronavirus (2019-nCoV) by the World Health Organization (WHO) on January 12, 2020. The Coronavirus Working Group (CSG) of the WHO and Internati- onal Committee proposed to call the new virus SARS-CoV-2 on February 11, 2020. As a result of the samples taken from the patient, the whole genome sequence of the SARS-CoV-2 was isolated on January 7, 2020, by Chinese scientists in a short t
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