Relevant bibliographies by topics / Scaffold matrix attachment region

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  1. Journal articles
  2. Dissertations / Theses
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Academic literature on the topic 'Scaffold matrix attachment region'

Author: Grafiati
Published: 4 June 2021
Last updated: 6 February 2022

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Journal articles on the topic "Scaffold matrix attachment region"

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Martens, Joost H. A., Matty Verlaan, Eric Kalkhoven, Josephine C. Dorsman, and Alt Zantema. "Scaffold/Matrix Attachment Region Elements Interact with a p300-Scaffold Attachment Factor A Complex and Are Bound by Acetylated Nucleosomes." Molecular and Cellular Biology 22, no. 8 (2002): 2598–606. http://dx.doi.org/10.1128/mcb.22.8.2598-2606.2002.

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ABSTRACT The transcriptional coactivator p300 regulates transcription by binding to proteins involved in transcription and by acetylating histones and other proteins. These transcriptional effects are mainly at promoter and enhancer elements. Regulation of transcription also occurs through scaffold/matrix attachment regions (S/MARs), the chromatin regions that bind the nuclear matrix. Here we show that p300 binds to the S/MAR binding protein scaffold attachment factor A (SAF-A), a major constituent of the nuclear matrix. Using chromatin immunoprecipitations, we established that both p300 and S
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Fiorini, A., F. de S. Gouveia, and M. A. Fernandez. "Scaffold/matrix attachment regions and intrinsic DNA curvature." Biochemistry (Moscow) 71, no. 5 (2006): 481–88. http://dx.doi.org/10.1134/s0006297906050038.

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Iarovaia, O., R. Hancock, M. Lagarkova, R. Miassod, and S. V. Razin. "Mapping of genomic DNA loop organization in a 500-kilobase region of the Drosophila X chromosome by the topoisomerase II-mediated DNA loop excision protocol." Molecular and Cellular Biology 16, no. 1 (1996): 302–8. http://dx.doi.org/10.1128/mcb.16.1.302.

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The recently developed procedure of chromosomal DNA loop excision by topoisomerase II-mediated DNA cleavage at matrix attachment sites (S. V. Razin, R. Hancock, O. Iarovaia, O. Westergaard, I. Gromova, and G. P. Georgiev, Cold Spring Harbor Symp. Quant. Biol. 58:25-35, 1993; I. I. Gromova, B. Thompsen, and S. V. Razin, Proc. Natl. Acad. Sci. USA 92:102-106, 1995) has been employed for mapping the DNA loop anchorage sites in a 500-kb region of the Drosophila melanogaster X chromosome. Eleven anchorage sites delimiting 10 DNA loops ranging in size from 20 to 90 kb were found within this region.
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Sumer, H. "A Rapid Method of Genomic Array Analysis of Scaffold/Matrix Attachment Regions (S/MARs) Identifies a 2.5-Mb Region of Enhanced Scaffold/Matrix Attachment at a Human Neocentromere." Genome Research 13, no. 7 (2003): 1737–43. http://dx.doi.org/10.1101/gr.1095903.

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Kipp, Michael, Frank Göhring, Thorsten Ostendorp, et al. "SAF-Box, a Conserved Protein Domain That Specifically Recognizes Scaffold Attachment Region DNA." Molecular and Cellular Biology 20, no. 20 (2000): 7480–89. http://dx.doi.org/10.1128/mcb.20.20.7480-7489.2000.

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ABSTRACT SARs (scaffold attachment regions) are candidate DNA elements for partitioning eukaryotic genomes into independent chromatin loops by attaching DNA to proteins of a nuclear scaffold or matrix. The interaction of SARs with the nuclear scaffold is evolutionarily conserved and appears to be due to specific DNA binding proteins that recognize SARs by a mechanism not yet understood. We describe a novel, evolutionarily conserved protein domain that specifically binds to SARs but is not related to SAR binding motifs of other proteins. This domain was first identified in human scaffold attach
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von Kries, Jens P., Hartmut Buhrmester, and Wolf H. Strätling. "A matrix/scaffold attachment region binding protein: Identification, purification, and mode of binding." Cell 64, no. 1 (1991): 123–35. http://dx.doi.org/10.1016/0092-8674(91)90214-j.

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Rudd, Stephen, Matthias Frisch, Korbinian Grote, Blake C. Meyers, Klaus Mayer, and Thomas Werner. "Genome-Wide in Silico Mapping of Scaffold/Matrix Attachment Regions in Arabidopsis Suggests Correlation of Intragenic Scaffold/Matrix Attachment Regions with Gene Expression." Plant Physiology 135, no. 2 (2004): 715–22. http://dx.doi.org/10.1104/pp.103.037861.

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Chavali, Pavithra Lakshminarasimhan, Keiko Funa, and Sreenivas Chavali. "Cis -regulation of microRNA expression by scaffold/matrix-attachment regions." Nucleic Acids Research 39, no. 16 (2011): 6908–18. http://dx.doi.org/10.1093/nar/gkr303.

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Heng, H. H. Q. "Chromatin loops are selectively anchored using scaffold/matrix-attachment regions." Journal of Cell Science 117, no. 7 (2004): 999–1008. http://dx.doi.org/10.1242/jcs.00976.

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Benham, Craig, Terumi Kohwi-Shigematsu, and Jürgen Bode. "Stress-induced duplex DNA destabilization in scaffold/matrix attachment regions." Journal of Molecular Biology 274, no. 2 (1997): 181–96. http://dx.doi.org/10.1006/jmbi.1997.1385.

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Dissertations / Theses on the topic "Scaffold matrix attachment region"

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Puchalska, Monika [Verfasser], and Gerhard [Akademischer Betreuer] Mittler. "Quantitative proteomic analysis of the interactome of mammalian S/MAR (scaffold/matrix attachment region) elements​." Freiburg : Universität, 2018. http://d-nb.info/1216826447/34.

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Baer, Alexandra E. M. "Funktioneller Vergleich von S-MARs ('scaffold-matrix attachment regions') und Insulatoren im chromosomalen Kontext." [S.l.] : [s.n.], 2002. http://deposit.ddb.de/cgi-bin/dokserv?idn=965617777.

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Anthony, Alasdair. "A genomic study of the nuclear matrix attachment region recognition signature." Thesis, University of Edinburgh, 2009. http://hdl.handle.net/1842/3174.

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Matrix attachment regions (MAR) are the sites on genomic DNA that interact with the nuclear matrix. A complex bipartite motif, the MAR recognition signature (MRS), has been proposed as a DNA sequence marker for MAR but its specificity and sensitivity remain unresolved. I describe here the distribution of the MRS in the genomes of a number of species from across animals and plants. The MRS is shown to have a distinctive, nonrandom distribution, with a particular relationship to genes. This relationship was studied in detail in the genome of Caenorhabditis elegans, revealing striking peaks of av
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LEPORC, SEVERINE. "Analyse structurale d'une sequence d'adn mar (matrix attachment region) localisee en 5 du gene de l'interferon humain." Paris 7, 2000. http://www.theses.fr/2000PA077136.

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Les segments d'adn, appeles mars (matrix attachment region), peuvent se fixer aux proteines de la matrice nucleaire et induire la formation de boucles de chromatine. Ils ponctuent l'adn chromosomique en unites fonctionnelles ou topologiques et se retrouvent souvent a proximite ou a l'interieur de sequences d'adn impliquees dans l'activation de la transcription. La segment mar en 5 du gene de l'interferon humain manifeste une grande facilite a passer de la forme double brin a la forme simple brin. J'ai effectue une etude comparative du site de desappariement dit mar n a t d(ctaatatatttag). D(ct
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Rojas, Noguera Ingrid Cecilia. "Studies of a matrix attachment region (MAR) adjacent to the mouse CD8a gene, and the MAR-binding proteins, SATB1 and CDP /." Digital version accessible at:, 2000. http://wwwlib.umi.com/cr/utexas/main.

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GARCIA, VILCHIS DAVID 173604, and VILCHIS DAVID GARCIA. "Caracterización de las regiones de anclaje a la matriz nuclear de bucles estructurales de DNA correspondientes a regiones específicas del genoma de la rata. establecimiento de una correlación entre la topología del DNA y su afinidad por la MN." Tesis de doctorado, Universidad Nacional Autónoma de México, 2018. http://hdl.handle.net/20.500.11799/94906.

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The nuclear matrix (NM) its a compartment formed by proteins, DNA and RNA. This compartment is obtained by extracting the nucleus with high-ionic strength solutions, non ionic detergents and a treatment with nucleases. In the interphase the genome of metazoan cells is organized in supercoiled loops anchored to the NM by loop anchorage regions (LARs). The interaction between the NM and LARs resists extraction with high-ionic strength solutions. LARs are tissue specific but are not necessarily conserved between species even within the same cell type. Although LARs occur in large numbers in the n
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Jeong, Sun Yong. "Functional investigation of arabidopsis long coiled-coil proteins and subcellular localization of plant rangap1." The Ohio State University, 2004. http://rave.ohiolink.edu/etdc/view?acc_num=osu1086119855.

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Court, Franck. "Organisation supérieure de la chromatine chez les mammifères : dynamique fondamentale et interactions spécifiques." Thesis, Montpellier 2, 2010. http://www.theses.fr/2010MON20082.

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Chez les mammifères, l'ADN des cellules interphasiques s'organise en une fibre chromatinienne confinée à l'intérieur de « territoires chromosomiques ». Ce confinement autorise l'établissement d'interactions à longue distance permettant une régulation fine des fonctions génomiques. Toutefois, l'organisation et la dynamique de la chromatine à l'échelle dite supranucléosomale (10 à 500 kb) reste méconnue. Afin d'étudier la chromatine à cette échelle, nous avons utilisé la méthode dite de 3C-qPCR qui permet de mesurer les fréquences d'interactions entre deux portions génomiques. Dans un premier te
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Baer, Alexandra E. M. [Verfasser]. "Funktioneller Vergleich von S-MARs ('scaffold-matrix attachment regions') und Insulatoren im chromosomalen Kontext / von Alexandra E. M. Baer." 2002. http://d-nb.info/965617777/34.

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Jin, Chuan. "Improvement of adoptive T-cell therapy for Cancer." Doctoral thesis, 2016. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-300210.

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Cancer immunotherapy has recently made remarkable clinical progress. Adoptive transfer of T-cells engineered with a chimeric antigen receptor (CAR) against CD19 has been successful in treatment of B-cell leukemia. Patient’s T-cells are isolated, activated, transduced with a vector encoding the CAR molecule and then expanded before being transferred back to the patient. However some obstacles restrict its success in solid tumors. This thesis explores different aspects to improve CAR T-cells therapy of cancer. Ex vivo expanded T-cells are usually sensitive to the harsh tumor microenvironment aft
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Books on the topic "Scaffold matrix attachment region"

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Pearce, Andrew G. The role of the matrix attachment region (MAR) in the regulation of mammalian DNA replication. Laurentian University, 1998.

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Book chapters on the topic "Scaffold matrix attachment region"

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Gluch, A., M. Vidakovic, and J. Bode. "Scaffold/Matrix Attachment Regions (S/MARs): Relevance for Disease and Therapy." In Handbook of Experimental Pharmacology. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/978-3-540-72843-6_4.

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Broeker, P. L., A. Harden, J. D. Rowley, and N. Zeleznik-Le. "The Mixed Lineage Leukemia (MLL) Protein Involved in 11 q23 Translocations Contains a Domain that Binds Cruciform DNA and Scaffold Attachment Region (SAR) DNA." In Molecular Aspects of Myeloid Stem Cell Development. Springer Berlin Heidelberg, 1996. http://dx.doi.org/10.1007/978-3-642-85232-9_26.

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Girod, Pierre-Alain, and Nicolas Mermod. "Use of scaffold/matrix-attachment regions for protein production." In Gene Transfer and Expression in Mammalian Cells. Elsevier, 2003. http://dx.doi.org/10.1016/s0167-7306(03)38022-6.

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"Matrix Attachment Region." In Encyclopedia of Genetics, Genomics, Proteomics and Informatics. Springer Netherlands, 2008. http://dx.doi.org/10.1007/978-1-4020-6754-9_9960.

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"MAR (matrix attachment region)." In Encyclopedia of Genetics, Genomics, Proteomics and Informatics. Springer Netherlands, 2008. http://dx.doi.org/10.1007/978-1-4020-6754-9_9870.

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Becker, Richard C., and Frederick A. Spencer. "Fibrinolytic Agents." In Fibrinolytic and Antithrombotic Therapy. Oxford University Press, 2006. http://dx.doi.org/10.1093/oso/9780195155648.003.0011.

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The fibrinolytic system plays a vital role in maintaining vital organ homeostasis. Fibrinolysis, defined as the dissolution of fibrin (the major scaffold for intravascular thrombus), is the process that regulates thrombus growth after hemostasis has been achieved, thus preserving tissue perfusion. An understanding of fibrinolysis has led to the development of pharmacologic agents that can be used in the treatment of arterial and venous thrombotic disorders, including acute myocardial infarction, acute ischemic stroke, and pulmonary embolism. Fibrinolytic therapy makes use of the vascular system’s intrinsic defense mechanism by accelerating and amplifying the conversion of an inactive enzyme precursor (zymogen), plasminogen, to the active enzyme plasmin. In turn, plasmin hydrolyzes several key bonds in the fibrin (clot) matrix, causing dissolution (lysis). A single-chain glycoprotein consisting of 790 amino acids, plasminogen is converted to plasmin by cleavage of the Arg560–Val561 peptide bond. The plasminogen molecule also contains specific lysine binding sites, which mediate its interaction with fibrin and α2-plasmin inhibitor. A serine protease with trypsinlike activity, plasmin attacks lysyl and arginyl bonds of fibrin at two principal sites: (1) the carboxyterminal portion α-chain (polar region) and (2) the coiled coil connectors containing α-, β-, and γ-chains. The ability of a fibrinolytic agent to dissolve an occlusive thrombus is determined by several factors. After administration the agent must be delivered to, perfuse, and ultimately infiltrate the thrombus while concomitantly being provided with an adequate amount of substrate (plasminogen) and the appropriate metabolic environment for an enzymatic reaction (conversion of plasminogen to plasmin) to take place. The intrinsic composition or ultrastructure of a thrombus also affects its lysability. Changes in the total amount and distribution of blood flow determine oxygen delivery to metabolically active tissues. They also determine the delivery of enzymatic substrate and plasminogen activators to the occlusive thrombus. In the heart, coronary blood flow correlates directly with mean arterial pressure. The flow-pressure curve is relatively flat above 65 to 70 mmHg, but becomes steeper as the mean arterial pressure decreases below this point. The relationship within the brain is more complex.
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Conference papers on the topic "Scaffold matrix attachment region"

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Pilus, Nur Shazwani Mohd, Norazfa Johari, Azrin Ahmad, and Nurul Yuziana Mohd Yusof. "Mapping analysis of scaffold/matrix attachment regions (s/MARs) from two different mammalian cell lines." In THE 2014 UKM FST POSTGRADUATE COLLOQUIUM: Proceedings of the Universiti Kebangsaan Malaysia, Faculty of Science and Technology 2014 Postgraduate Colloquium. AIP Publishing LLC, 2014. http://dx.doi.org/10.1063/1.4895256.

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Tian-Yun WANG and Le-Xun XUE. "Matrix Attachment Region Increased Reporter Gene Expression in Stably Transformed Dunaliella salina." In 2006 Portland, Oregon, July 9-12, 2006. American Society of Agricultural and Biological Engineers, 2006. http://dx.doi.org/10.13031/2013.21039.

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Sebastine, I. M., and D. J. Williams. "Requirements for the Manufacturing of Scaffold Biomaterial With Features at Multiple Scales." In ASME 2005 International Mechanical Engineering Congress and Exposition. ASMEDC, 2005. http://dx.doi.org/10.1115/imece2005-82515.

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Tissue engineering aims to restore the complex function of diseased tissue using cells and scaffold materials. Tissue engineering scaffolds are three-dimensional (3D) structures that assist in the tissue engineering process by providing a site for cells to attach, proliferate, differentiate and secrete an extra-cellular matrix, eventually leading cells to form a neo-tissue of predetermined, three-dimensional shape and size. For a scaffold to function effectively, it must possess the optimum structural parameters conducive to the cellular activities that lead to tissue formation; these include
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Schiele, Nathan R., Ryan A. Koppes, and David T. Corr. "Mechanical Stimulation of Scaffold-Free, Cell-Based Single Fibers for Tissue Engineered Tendon." In ASME 2011 Summer Bioengineering Conference. American Society of Mechanical Engineers, 2011. http://dx.doi.org/10.1115/sbc2011-53326.

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The clinical demand for tendon replacements following injury, surgical excision, or disease drives current tissue engineering endeavors. Great strides have been made in producing functional tissues, but none have gained clinical acceptance. Scaffold-free and cell-based engineered tissue constructs allow the use of autologous cells and avoid potential scaffold-based complications such as immune rejection and breakdown byproducts. However, scaffold-free approaches have yet to replicate the mechanical properties of tendon [1,2]. In an effort to mimic some key aspects of in vivo embryonic tendon d
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Waly, Gihan H., Inas S. Abdel Hamid, Mohamed A. Sharaf, Mona K. Marei, and Naglaa A. Mostafa. "Evaluation of Hybrid Chitosan-Cellulose Biodegradable Scaffolds for Tissue Engineering Applications." In ASME 2008 2nd Multifunctional Nanocomposites and Nanomaterials International Conference. ASMEDC, 2008. http://dx.doi.org/10.1115/mn2008-47068.

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Natural polymers continue to provide effective biocompatible scaffolds for use in tissue engineering applications. In some respects, their chemical structure closely mimics that of the extracelluar matrix of biological tissues. Eventhough a wide variety of biopolymers can be used for these applications, no single polymer has been yet found to fulfill all requirements needed in a scaffold material. In an attempt to combine the advantages of two natural polymers, hybrid scaffolds of chitosan/cellulose constructs had been evaluated as candidates for tissue engineering applications. Four groups of
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O’Connell, Grace D., Clare Gollnick, Gerard A. Ateshian, Ravi V. Bellamkonda, and Clark T. Hung. "Lipid Mictrotubes as a Nutrient Reservoir or Enzyme Delivery Vehicle in Engineered Cartilage." In ASME 2012 Summer Bioengineering Conference. American Society of Mechanical Engineers, 2012. http://dx.doi.org/10.1115/sbc2012-80472.

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Tissue-engineered cartilage using a hydrogel scaffold is capable of achieving native compressive properties and glycosaminglycan (GAG) content [1]. However, these tissues are limited in their collagen production and closer inspection of the localized mechanical properties demonstrates that mature constructs consist of a stiffer periphery region surrounding a softer core [1, 2]. Nutrient diffusion becomes increasingly more challenging as the cells in the construct periphery deposit extracellular matrix. Altering the scaffold porosity by adding microscopic porogens can improve the nutrient diffu
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Larsen, Melinda, Riffard Jean-Gilles, David Soscia, et al. "Development of Nanofiber Scaffolds for Engineering an Artificial Salivary Gland." In ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology. ASMEDC, 2010. http://dx.doi.org/10.1115/nemb2010-13372.

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There is currently a significant clinical need for artificial salivary glands as a therapeutic option for patients suffering from xerostomia. To achieve unidirectional fluid secretion, the epithelial acinar cells must establish and maintain polarity by partitioning the plasma membrane into distinct apical and basolateral membrane surfaces to achieve unidirectional fluid secretion. Establishment and maintenance of epithelial acinar cell polarity has been difficult to achieve in vitro, and yet is critical saliva secretion in an engineered salivary gland. Physical properties of the scaffold provi
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Harley, Brendan A. C. "Collagen Scaffold-Membrane Composites for Mimicking Orthopedic Interfaces." In ASME 2011 Summer Bioengineering Conference. American Society of Mechanical Engineers, 2011. http://dx.doi.org/10.1115/sbc2011-54026.

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Tendons are specialized connective tissues that transmit load between bone and muscle, and whose microstructural and compositional features underlie their function. The biological solution to the problem of connecting relatively compliant tendon to stiffer (∼2 orders of magnitude) bone is a gradient interface zone ∼100μm wide. Over the tendon-bone-junction (TBJ) a linear transition takes place in the ECM inorganic:organic (mineral:collagen) ratio as well as mineral crystallinity from that of tendon to bone. While small TBJ injuries can heal via regeneration, severe defects undergo repair-media
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Nowlin, John, Md Maksudul Islam, Yingge Zhou, and George Z. Tan. "Cone Electrospinning Polycaprolactone / Collagen Scaffolds With Microstructure Gradient." In ASME 2019 14th International Manufacturing Science and Engineering Conference. American Society of Mechanical Engineers, 2019. http://dx.doi.org/10.1115/msec2019-2871.

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Abstract Polycaprolactone (PCL) is a synthetic biomaterial that has been widely used for tissue engineering scaffolds. Collagen, a natural polymer found in various tissues in the human body, can be electrospun in combination with PCL to improve the scaffold’s biological characteristics for cell attachment, growth and differentiation. Recreating the physical structure which mimics the extracellular matrix of musculoskeletal tissues generally requires fibrous patterns, including aligned, random, or a mixture of both to form a gradient structure. This study introduced a novel cone rotation electr
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Aydin, Mehmet Serhat, Hatice Kubra Bilgili, Gullu Kiziltas Sendur, Melis Emanet, and Gozde Ozaydin Ince. "Fabrication and Analysis of Surface Functionalized Porous PCL-nHA Scaffolds With P(HEMA-co-EGDMA) Hydrogel via iCVD and BMP-2 Release Simulation." In ASME 2020 International Mechanical Engineering Congress and Exposition. American Society of Mechanical Engineers, 2020. http://dx.doi.org/10.1115/imece2020-24053.

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Abstract Well-designed tissue engineering scaffolds are needed for effective healing by regulating cell behavior such as cell attachment, proliferation and differentiation. Scaffolds should not only exhibit biocompatibility, interconnected porosity and strength but should provide hydrophilic surface where cell adheres in-vitro and in-vivo. The aim of this study is the fabrication and analysis of porous and surface functionalized biocompatible scaffolds for bone tissue engineering. In the first part of the study, we produce porous polycaprolactone (PCL)-nano-hydroxyapatite (nHA) scaffolds using
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