Academic literature on the topic 'Sequence alignment Sequence analysis'
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Journal articles on the topic "Sequence alignment Sequence analysis"
Staritzbichler, René, Edoardo Sarti, Emily Yaklich, et al. "Refining pairwise sequence alignments of membrane proteins by the incorporation of anchors." PLOS ONE 16, no. 4 (2021): e0239881. http://dx.doi.org/10.1371/journal.pone.0239881.
Full textJi, Guo Li, Jing Ci Yao, Zi Jiang Yang, and Cong Ting Ye. "LemK_MSA: A Multiple Sequence Alignment Method with Sequence Vectorization Based on Lempel-Ziv." Applied Mechanics and Materials 284-287 (January 2013): 3203–7. http://dx.doi.org/10.4028/www.scientific.net/amm.284-287.3203.
Full textBarton, Geoffrey J. "Protein Sequence Alignment Techniques." Acta Crystallographica Section D Biological Crystallography 54, no. 6 (1998): 1139–46. http://dx.doi.org/10.1107/s0907444998008324.
Full textWilson, W. C. "Activity Pattern Analysis by Means of Sequence-Alignment Methods." Environment and Planning A: Economy and Space 30, no. 6 (1998): 1017–38. http://dx.doi.org/10.1068/a301017.
Full textRen, Jie, Xin Bai, Yang Young Lu, et al. "Alignment-Free Sequence Analysis and Applications." Annual Review of Biomedical Data Science 1, no. 1 (2018): 93–114. http://dx.doi.org/10.1146/annurev-biodatasci-080917-013431.
Full textCook, Jonathan P., and Malcolm A. McCrae. "Sequence analysis of the guanylyltransferase (VP3) of group A rotaviruses." Journal of General Virology 85, no. 4 (2004): 929–32. http://dx.doi.org/10.1099/vir.0.19629-0.
Full textAsare, James Owusu, Justice Kwame Appati, and Kwaku Darkwah. "Formulation and Analysis of Patterns in a Score Matrix for Global Sequence Alignment." International Journal of Mathematics and Mathematical Sciences 2020 (June 1, 2020): 1–9. http://dx.doi.org/10.1155/2020/3858057.
Full textESKIN, ELEAZAR, and SAGI SNIR. "INCORPORATING HOMOLOGUES INTO SEQUENCE EMBEDDINGS FOR PROTEIN ANALYSIS." Journal of Bioinformatics and Computational Biology 05, no. 03 (2007): 717–38. http://dx.doi.org/10.1142/s0219720007002734.
Full textAadland, Kelsey, and Bryan Kolaczkowski. "Alignment-Integrated Reconstruction of Ancestral Sequences Improves Accuracy." Genome Biology and Evolution 12, no. 9 (2020): 1549–65. http://dx.doi.org/10.1093/gbe/evaa164.
Full textLebsir, Rabah, Abdesslem Layeb, and Tahi Fariza. "A Greedy Clustering Algorithm for Multiple Sequence Alignment." International Journal of Cognitive Informatics and Natural Intelligence 15, no. 4 (2021): 1–17. http://dx.doi.org/10.4018/ijcini.20211001.oa41.
Full textDissertations / Theses on the topic "Sequence alignment Sequence analysis"
Starrett, Dean. "Optimal Alignment of Multiple Sequence Alignments." Diss., The University of Arizona, 2008. http://hdl.handle.net/10150/194840.
Full textPowell, David Richard 1973. "Algorithms for sequence alignment." Monash University, School of Computer Science and Software Engineering, 2001. http://arrow.monash.edu.au/hdl/1959.1/8051.
Full textHo, Ngai-lam, and 何毅林. "Algorithms on constrained sequence alignment." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2004. http://hub.hku.hk/bib/B30201949.
Full textArner, Erik. "Solving repeat problems in shotgun sequencing /." Stockholm, 2006. http://diss.kib.ki.se/2006/91-7140-996-3/.
Full textRausch, Tobias [Verfasser]. "Dissecting multiple sequence alignment methods : the analysis, design and development of generic multiple sequence alignment components in SeqAn / Tobias Rausch." Berlin : Freie Universität Berlin, 2010. http://d-nb.info/1024541460/34.
Full textKim, Eagu. "Inverse Parametric Alignment for Accurate Biological Sequence Comparison." Diss., The University of Arizona, 2008. http://hdl.handle.net/10150/193664.
Full textMaydt, Jochen. "Analysis of recombination in molecular sequence data." Aachen Shaker, 2008. http://d-nb.info/993318045/04.
Full textHerman, Joseph L. "Multiple sequence analysis in the presence of alignment uncertainty." Thesis, University of Oxford, 2014. http://ora.ox.ac.uk/objects/uuid:88a56d9f-a96e-48e3-b8dc-a73f3efc8472.
Full textBell, Lachlan Hamilton. "Sequence analysis of enzymes of the shikimate pathway : development of a novel multiple sequence alignment algorithm." Thesis, University of Glasgow, 1996. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.307193.
Full textHossain, A. S. Md Mukarram. "Scalable tools for high-throughput viral sequence analysis." Thesis, University of Cambridge, 2017. https://www.repository.cam.ac.uk/handle/1810/276228.
Full textBooks on the topic "Sequence alignment Sequence analysis"
Larson, Stefan M. A comprehensive sequence alignment analysis and structure comparison of the SH3 domain family. National Library of Canada, 1999.
Find full textSheng wu ji suan: Sheng wu xu lie de fen xi fang fa yu ying yong. Ke xue chu ban she, 2010.
Find full textKatoh, Kazutaka, ed. Multiple Sequence Alignment. Springer US, 2021. http://dx.doi.org/10.1007/978-1-0716-1036-7.
Full textRussell, David J., ed. Multiple Sequence Alignment Methods. Humana Press, 2014. http://dx.doi.org/10.1007/978-1-62703-646-7.
Full textGribskov, Michael, and John Devereux, eds. Sequence Analysis Primer. Palgrave Macmillan UK, 1991. http://dx.doi.org/10.1007/978-1-349-21355-9.
Full textDeBlasio, Dan, and John Kececioglu. Parameter Advising for Multiple Sequence Alignment. Springer International Publishing, 2017. http://dx.doi.org/10.1007/978-3-319-64918-4.
Full textSwindell, Simon R., ed. Sequence Data Analysis Guidebook. Humana Press, 1997. http://dx.doi.org/10.1385/0896033589.
Full textBook chapters on the topic "Sequence alignment Sequence analysis"
Yap, Tieng K., Ophir Frieder, and Robert L. Martino. "Multiprocessor Sequence Alignment." In High Performance Computational Methods for Biological Sequence Analysis. Springer US, 1996. http://dx.doi.org/10.1007/978-1-4613-1391-5_5.
Full textSchuler, Gregory D. "Sequence Alignment and Database Searching." In Methods of Biochemical Analysis. John Wiley & Sons, Inc., 2006. http://dx.doi.org/10.1002/9780470110607.ch7.
Full textSchuler, Gregory D. "Sequence Alignment and Database Searching." In Methods of Biochemical Analysis. John Wiley & Sons, Inc., 2002. http://dx.doi.org/10.1002/0471223921.ch8.
Full textThompson, Steven M. "Multiple Sequence Alignment and Analysis." In Introduction to Bioinformatics. Humana Press, 2003. http://dx.doi.org/10.1007/978-1-59259-335-4_33.
Full textBarton, Geoffrey J. "The AMPS Package for Multiple Protein Sequence Alignment." In Computer Analysis of Sequence Data. Humana Press, 1994. http://dx.doi.org/10.1385/0-89603-276-0:327.
Full textBarton, Geoffrey J., Robert B. Russell, and Craig D. Livingstone. "Prediction of Protein Structure from Multiple Sequence Alignment." In Methods in Protein Sequence Analysis. Springer US, 1993. http://dx.doi.org/10.1007/978-1-4899-1603-7_27.
Full textBaxevanis, Andreas D. "Practical Aspects of Multiple Sequence Alignment." In Methods of Biochemical Analysis. John Wiley & Sons, Inc., 2006. http://dx.doi.org/10.1002/9780470110607.ch8.
Full textHiggins, Desmond G. "Clustal V: Multiple Alignment of DNA and Protein Sequences." In Computer Analysis of Sequence Data. Humana Press, 1994. http://dx.doi.org/10.1385/0-89603-276-0:307.
Full textTchoukalov, Tzvetan, Christian Monson, and Brian Roark. "Morphological Analysis by Multiple Sequence Alignment." In Lecture Notes in Computer Science. Springer Berlin Heidelberg, 2010. http://dx.doi.org/10.1007/978-3-642-15754-7_80.
Full textYu, Fuli, and Cristian Coarfa. "Sequence Alignment, Analysis, and Bioinformatic Pipelines." In Next Generation Sequencing. Springer New York, 2013. http://dx.doi.org/10.1007/978-1-4614-7001-4_4.
Full textConference papers on the topic "Sequence alignment Sequence analysis"
Sanchez, Friman, Esther Salami, Alex Ramirez, and Mateo Valero. "Performance Analysis of Sequence Alignment Applications." In 2006 IEEE International Symposium on Workload Characterization. IEEE, 2006. http://dx.doi.org/10.1109/iiswc.2006.302729.
Full textBucak, I. O., and V. Uslan. "An analysis of sequence alignment: Heuristic algorithms." In 2010 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2010). IEEE, 2010. http://dx.doi.org/10.1109/iembs.2010.5626428.
Full textMolina, Valentin, Gerardo Ceballos, and Hermann Davila. "ECG signal analysis using temporary dynamic sequence alignment." In 2013 XVIII Symposium of Image, Signal Processing, and Artificial Vision (STSIVA). IEEE, 2013. http://dx.doi.org/10.1109/stsiva.2013.6644910.
Full textRaue, Federico, Wonmin Byeon, Thomas M. Breuel, and Marcus Liwicki. "Parallel sequence classification using recurrent neural networks and alignment." In 2015 13th International Conference on Document Analysis and Recognition (ICDAR). IEEE, 2015. http://dx.doi.org/10.1109/icdar.2015.7333828.
Full textZou, Quan, Mao-Zu Guo, Yang Liu, and Zhi-An Xing. "A Novel Comparative Sequence Analysis Method for ncRNA Secondary Structure Prediction without Multiple Sequence Alignment." In 2008 Fourth International Conference on Natural Computation. IEEE, 2008. http://dx.doi.org/10.1109/icnc.2008.446.
Full textSánchez Castaño, Friman, Alex Ramirez, and Mateo Valero. "Quantitative analysis of sequence alignment applications on multiprocessor architectures." In the 6th ACM conference. ACM Press, 2009. http://dx.doi.org/10.1145/1531743.1531755.
Full textHuang, Conrad C., Walter R. Novak, Patricia C. Babbitt, Andrew I. Jewett, Thomas E. Ferrin, and Teri E. Klein. "Integrated Tools for Structural and Sequence Alignment and Analysis." In Proceedings of the Pacific Symposium. WORLD SCIENTIFIC, 1999. http://dx.doi.org/10.1142/9789814447331_0022.
Full textSchambach, Marc-Peter, and Sheikh Faisal Rashid. "Stabilize Sequence Learning with Recurrent Neural Networks by Forced Alignment." In 2013 12th International Conference on Document Analysis and Recognition (ICDAR). IEEE, 2013. http://dx.doi.org/10.1109/icdar.2013.257.
Full textChaabane, Lamiche. "Resolving Multiple Sequence Alignment Problem Using an Intelligent Cooperative Algorithm." In 2018 3rd International Conference on Pattern Analysis and Intelligent Systems (PAIS). IEEE, 2018. http://dx.doi.org/10.1109/pais.2018.8598481.
Full textSelvitopi, Oguz, Saliya Ekanayake, Giulia Guidi, Georgios A. Pavlopoulos, Ariful Azad, and Aydin Buluc. "Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices." In SC20: International Conference for High Performance Computing, Networking, Storage and Analysis. IEEE, 2020. http://dx.doi.org/10.1109/sc41405.2020.00079.
Full textReports on the topic "Sequence alignment Sequence analysis"
Yee, M. L., and D. C. Craft. Fast DNA sequence alignment using optical computing. Office of Scientific and Technical Information (OSTI), 1996. http://dx.doi.org/10.2172/414348.
Full textRangwala, Huzefa, and George Karypis. Incremental Window-based Protein Sequence Alignment Algorithms. Defense Technical Information Center, 2006. http://dx.doi.org/10.21236/ada444856.
Full textLefebvre, Robert Alexander, Brandon R. Langley, and Jordan P. Lefebvre. Workbench Analysis Sequence Processor. Office of Scientific and Technical Information (OSTI), 2017. http://dx.doi.org/10.2172/1524895.
Full textFox, George E., and Timmothy Haselman. Comparative Sequence Analysis of Structural RNA. Defense Technical Information Center, 1991. http://dx.doi.org/10.21236/ada232340.
Full textStates, David J. Analysis and Annotation of Nucleic Acid Sequence. Office of Scientific and Technical Information (OSTI), 2004. http://dx.doi.org/10.2172/899629.
Full textDavid J. States. Analysis and Annotation of Nucleic Acid Sequence. Office of Scientific and Technical Information (OSTI), 1998. http://dx.doi.org/10.2172/826380.
Full textShavlik, J. W. Applying machine learning techniques to DNA sequence analysis. Office of Scientific and Technical Information (OSTI), 1992. http://dx.doi.org/10.2172/5688406.
Full textSwain, A. D. Accident Sequence Evaluation Program: Human reliability analysis procedure. Office of Scientific and Technical Information (OSTI), 1987. http://dx.doi.org/10.2172/6370593.
Full textShavlik, J. W., and M. O. Noordewier. Applying machine learning techniques to DNA sequence analysis. Office of Scientific and Technical Information (OSTI), 1992. http://dx.doi.org/10.2172/7023074.
Full textUberbacher, E. C., Y. Xu, M. B. Shah, V. Olman, M. Parang, and R. Mural. An editing environment for DNA sequence analysis and annotation. Office of Scientific and Technical Information (OSTI), 1998. http://dx.doi.org/10.2172/563243.
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