Journal articles on the topic 'Sequence Analysis, DNA – methods'
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Steinke, Dirk, Miguel Vences, Walter Salzburger, and Axel Meyer. "TaxI: a software tool for DNA barcoding using distance methods." Philosophical Transactions of the Royal Society B: Biological Sciences 360, no. 1462 (2005): 1975–80. http://dx.doi.org/10.1098/rstb.2005.1729.
Full textMcBride, L. J., S. M. Koepf, R. A. Gibbs, et al. "Automated DNA sequencing methods involving polymerase chain reaction." Clinical Chemistry 35, no. 11 (1989): 2196–201. http://dx.doi.org/10.1093/clinchem/35.11.2196.
Full textWILSON, R., and L. HOOD. "High-throughput fluorescent DNA sequence analysis: Methods and automation." Methods 3, no. 1 (1991): 48–54. http://dx.doi.org/10.1016/s1046-2023(05)80163-x.
Full textMatsuo, Kouki. "Evaluation of methods for plant genomic DNA sequence analysis without DNA and PCR product purification." Plant Science 312 (November 2021): 111023. http://dx.doi.org/10.1016/j.plantsci.2021.111023.
Full textMendizabal-Ruiz, Gerardo, Israel Román-Godínez, Sulema Torres-Ramos, Ricardo A. Salido-Ruiz, Hugo Vélez-Pérez, and J. Alejandro Morales. "Genomic signal processing for DNA sequence clustering." PeerJ 6 (January 24, 2018): e4264. http://dx.doi.org/10.7717/peerj.4264.
Full textGibson, Neil J. "The use of real-time PCR methods in DNA sequence variation analysis." Clinica Chimica Acta 363, no. 1-2 (2006): 32–47. http://dx.doi.org/10.1016/j.cccn.2005.06.022.
Full textQi, Xingqin, Edgar Fuller, Qin Wu, and Cun-Quan Zhang. "Numerical Characterization of DNA Sequence Based on Dinucleotides." Scientific World Journal 2012 (2012): 1–6. http://dx.doi.org/10.1100/2012/104269.
Full textStern, David B., Eduardo Castro Nallar, Jason Rathod, and Keith A. Crandall. "DNA Barcoding analysis of seafood accuracy in Washington, D.C. restaurants." PeerJ 5 (April 25, 2017): e3234. http://dx.doi.org/10.7717/peerj.3234.
Full textLu, Yue, Long Zhao, Zhao Li, and Xiangjun Dong. "Genetic Similarity Analysis Based on Positive and Negative Sequence Patterns of DNA." Symmetry 12, no. 12 (2020): 2090. http://dx.doi.org/10.3390/sym12122090.
Full textLipsky, Robert H., Chiara M. Mazzanti, Joseph G. Rudolph, et al. "DNA Melting Analysis for Detection of Single Nucleotide Polymorphisms." Clinical Chemistry 47, no. 4 (2001): 635–44. http://dx.doi.org/10.1093/clinchem/47.4.635.
Full textBenabou, Sanae, Cyril Ruckebusch, Michel Sliwa, et al. "Study of conformational transitions of i-motif DNA using time-resolved fluorescence and multivariate analysis methods." Nucleic Acids Research 47, no. 13 (2019): 6590–605. http://dx.doi.org/10.1093/nar/gkz522.
Full textNelson, Adin, Ivelise Rijo, Zhigang Zhang, Andrew D. Zelenetz, and Ariela Noy. "Feasiblity and Implication of Bidirectional Sequencing Using a Multiplex Framework 2 Region Primer for Somatic Mutation Analysis of the Immunoglobulin (IgH) Heavy Chain in Chronic Lymphocytic Leukemia (CLL)." Blood 110, no. 11 (2007): 4706. http://dx.doi.org/10.1182/blood.v110.11.4706.4706.
Full textAbbas, Ali Hadi, Haider Abas AL saegh, and Furkan Sabbar ALaraji. "Sequence diversity and evolution of infectious bursal disease virus in Iraq." F1000Research 10 (April 16, 2021): 293. http://dx.doi.org/10.12688/f1000research.28421.1.
Full textAbbas, Ali Hadi, Haider Abas AL saegh, and Furkan Sabbar ALaraji. "Sequence diversity and evolution of infectious bursal disease virus in Iraq." F1000Research 10 (September 2, 2021): 293. http://dx.doi.org/10.12688/f1000research.28421.2.
Full textTang, Yi-Wei, Alexander Von Graevenitz, Michael G. Waddington, et al. "Identification of Coryneform Bacterial Isolates by Ribosomal DNA Sequence Analysis." Journal of Clinical Microbiology 38, no. 4 (2000): 1676–78. http://dx.doi.org/10.1128/jcm.38.4.1676-1678.2000.
Full textHouse, Brent L., Michael W. Mortimer, and Michael L. Kahn. "New Recombination Methods for Sinorhizobium meliloti Genetics." Applied and Environmental Microbiology 70, no. 5 (2004): 2806–15. http://dx.doi.org/10.1128/aem.70.5.2806-2815.2004.
Full textChristoffersen, M. L., M. E. Araújo, and M. A. M. Moreira. "A molecular method for a qualitative analysis of potentially coding sequences of DNA." Brazilian Journal of Biology 64, no. 3a (2004): 383–98. http://dx.doi.org/10.1590/s1519-69842004000300003.
Full textGomes, A. R., S. Vinga, M. Zavolan, and H. de Lencastre. "Analysis of the Genetic Variability of Virulence-Related Loci in Epidemic Clones of Methicillin-Resistant Staphylococcus aureus." Antimicrobial Agents and Chemotherapy 49, no. 1 (2005): 366–79. http://dx.doi.org/10.1128/aac.49.1.366-379.2005.
Full textMacas, Jiří, Pavel Neumann, Petr Novák, and Jiming Jiang. "Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data." Bioinformatics 26, no. 17 (2010): 2101–8. http://dx.doi.org/10.1093/bioinformatics/btq343.
Full textSardaraz, Muhammad, Muhammad Tahir, and Ataul Aziz Ikram. "Advances in high throughput DNA sequence data compression." Journal of Bioinformatics and Computational Biology 14, no. 03 (2016): 1630002. http://dx.doi.org/10.1142/s0219720016300021.
Full textVolobuev, AN N., ES S. Petrov, and NP P. Romanchuk. "BIOPHYSICAL BASES OF GENOME ORGANIZATION." Science and Innovations in Medicine 2, no. 4 (2017): 13–17. http://dx.doi.org/10.35693/2500-1388-2017-0-4-13-17.
Full textZhang, Shao Xuan, Xin Rui Liu, Bo Chuan Wang, Yun Hui Ling, De Jun Sun, and Guang Zhu Lin. "Comparison of the ITS Sequences of 5 Common Potentilla Species in Jilin Province of China." Advanced Materials Research 554-556 (July 2012): 1690–93. http://dx.doi.org/10.4028/www.scientific.net/amr.554-556.1690.
Full textTan, Chengjie, Shanshan Li, and Ping Zhu. "4D Graphical representation research of DNA sequences." International Journal of Biomathematics 08, no. 01 (2015): 1550004. http://dx.doi.org/10.1142/s1793524515500047.
Full textLastuti, Nunuk Dyah Retno, Ali Rohman, Didik Handiyatno, Dony Chrismanto, and Kurnia Desiandura. "Sequence analysis of the cytochrome c oxidase subunit 1 gene of Sarcoptes scabiei isolated from goats and rabbits in East Java, Indonesia." July-2019 12, no. 7 (2019): 959–64. http://dx.doi.org/10.14202/vetworld.2019.959-964.
Full textDvorská, L., M. Bartoš, G. Martin, W. Erler, and I. Pavlík. "Strategies for differentiation, identification and typing of medically important species of mycobacteria by molecular methods." Veterinární Medicína 46, No. 11–12 (2001): 309–28. http://dx.doi.org/10.17221/7890-vetmed.
Full textBuldyrev, S. V., N. V. Dokholyan, A. L. Goldberger, et al. "Analysis of DNA sequences using methods of statistical physics." Physica A: Statistical Mechanics and its Applications 249, no. 1-4 (1998): 430–38. http://dx.doi.org/10.1016/s0378-4371(97)00503-7.
Full textSuvorova, Yulia M., Maria A. Korotkova, and Eugene V. Korotkov. "Comparative analysis of periodicity search methods in DNA sequences." Computational Biology and Chemistry 53 (December 2014): 43–48. http://dx.doi.org/10.1016/j.compbiolchem.2014.08.008.
Full textLiu, Bin. "BioSeq-Analysis: a platform for DNA, RNA and protein sequence analysis based on machine learning approaches." Briefings in Bioinformatics 20, no. 4 (2017): 1280–94. http://dx.doi.org/10.1093/bib/bbx165.
Full textBrody, Thomas, Amarendra Yavatkar, Alexander Kuzin, and Ward F. Odenwald. "Ultraconserved Non-coding DNA Within Diptera and Hymenoptera." G3 Genes|Genomes|Genetics 10, no. 9 (2020): 3015–24. http://dx.doi.org/10.1534/g3.120.401502.
Full textStarke, Ingo C., Wilfried Vahjen, Robert Pieper, and Jürgen Zentek. "The Influence of DNA Extraction Procedure and Primer Set on the Bacterial Community Analysis by Pyrosequencing of Barcoded 16S rRNA Gene Amplicons." Molecular Biology International 2014 (July 10, 2014): 1–10. http://dx.doi.org/10.1155/2014/548683.
Full textInbamalar, T. M., and R. Sivakumar. "Improved Algorithm for Analysis of DNA Sequences Using Multiresolution Transformation." Scientific World Journal 2015 (2015): 1–9. http://dx.doi.org/10.1155/2015/786497.
Full textGernandt, David S., Garth Holman, Christopher Campbell, et al. "Phylogenetics of extant and fossil Pinaceae: methods for increasing topological stability." Botany 94, no. 9 (2016): 863–84. http://dx.doi.org/10.1139/cjb-2016-0064.
Full textRajaei, Pedram, Khadijeh Hoda Jahanian, Amin Beheshti, Shahab S. Band, Abdollah Dehzangi, and Hamid Alinejad-Rokny. "VIRMOTIF: A User-Friendly Tool for Viral Sequence Analysis." Genes 12, no. 2 (2021): 186. http://dx.doi.org/10.3390/genes12020186.
Full textCWIKLINSKI, K., F. N. J. KOOYMAN, D. C. K. VAN DOORN, J. B. MATTHEWS, and J. E. HODGKINSON. "New insights into sequence variation in the IGS region of 21 cyathostomin species and the implication for molecular identification." Parasitology 139, no. 8 (2012): 1063–73. http://dx.doi.org/10.1017/s0031182012000467.
Full textPhillips, Ruth B., Susan A. Manley, and Thomas J. Daniels. "Systematics of the Salmonid Genus Salvelinus Inferred from Ribosomal DNA Sequences." Canadian Journal of Fisheries and Aquatic Sciences 51, S1 (1994): 198–204. http://dx.doi.org/10.1139/f94-305.
Full textBlackwood, Christopher B., Adam Oaks, and Jeffrey S. Buyer. "Phylum- and Class-Specific PCR Primers for General Microbial Community Analysis." Applied and Environmental Microbiology 71, no. 10 (2005): 6193–98. http://dx.doi.org/10.1128/aem.71.10.6193-6198.2005.
Full textDewhirst, Floyd E., Zeli Shen, Michael S. Scimeca, et al. "Discordant 16S and 23S rRNA Gene Phylogenies for the Genus Helicobacter: Implications for Phylogenetic Inference and Systematics." Journal of Bacteriology 187, no. 17 (2005): 6106–18. http://dx.doi.org/10.1128/jb.187.17.6106-6118.2005.
Full textZhang, Peng, Bertrand Boisson, Peter D. Stenson, et al. "SeqTailor: a user-friendly webserver for the extraction of DNA or protein sequences from next-generation sequencing data." Nucleic Acids Research 47, W1 (2019): W623—W631. http://dx.doi.org/10.1093/nar/gkz326.
Full textvan Belkum, Alex, Stewart Scherer, Loek van Alphen, and Henri Verbrugh. "Short-Sequence DNA Repeats in Prokaryotic Genomes." Microbiology and Molecular Biology Reviews 62, no. 2 (1998): 275–93. http://dx.doi.org/10.1128/mmbr.62.2.275-293.1998.
Full textJenkins, Bethany D., Grieg F. Steward, Steven M. Short, Bess B. Ward, and Jonathan P. Zehr. "Fingerprinting Diazotroph Communities in the Chesapeake Bay by Using a DNA Macroarray." Applied and Environmental Microbiology 70, no. 3 (2004): 1767–76. http://dx.doi.org/10.1128/aem.70.3.1767-1776.2004.
Full textIgarashi, Yoji, Daisuke Mori, Susumu Mitsuyama, et al. "A Preliminary Metagenome Analysis Based on a Combination of Protein Domains." Proteomes 7, no. 2 (2019): 19. http://dx.doi.org/10.3390/proteomes7020019.
Full textNYEO, SU-LONG, and I.-CHING YANG. "CODON DISTRIBUTIONS IN DNA SEQUENCE OF ESCHERICHIA COLI." Journal of Biological Systems 10, no. 01 (2002): 47–60. http://dx.doi.org/10.1142/s0218339002000299.
Full textDatta, Sibnarayan, Reji Gopalakrishnan, Soumya Chatterjee, and Vijay Veer. "Phylogenetic Characterization of a Novel Insect-Specific Flavivirus Detected in a Culex Pool, Collected from Assam, India." Intervirology 58, no. 3 (2015): 149–54. http://dx.doi.org/10.1159/000381901.
Full textXu, Liu, and Masahide Seki. "Recent advances in the detection of base modifications using the Nanopore sequencer." Journal of Human Genetics 65, no. 1 (2019): 25–33. http://dx.doi.org/10.1038/s10038-019-0679-0.
Full textEnaigbe, Andrew A., Obhioze Augustine Akpoka, and Stanley Odaro Imade. "ASSESSMENT OF 16S rRNA SEQUENCE AND HETEROTROPHIC PLATE COUNT (HPC) METHODS OF IDENTIFYING BACTERIA FROM DRINKING WATER SYSTEMS IN BENIN CITY METROPOLIS." Bacterial Empire 2, no. 3 (2019): 63. http://dx.doi.org/10.36547/be.2019.2.3.63-69.
Full textVuddhakul, Varaporn, Toshihiro Nakai, Chiho Matsumoto, et al. "Analysis of gyrB and toxRGene Sequences of Vibrio hollisae and Development ofgyrB- and toxR-Targeted PCR Methods for Isolation of V. hollisae from the Environment and Its Identification." Applied and Environmental Microbiology 66, no. 8 (2000): 3506–14. http://dx.doi.org/10.1128/aem.66.8.3506-3514.2000.
Full textShah, Mohammad Monir, Hirotoshi Iihara, Makiko Noda, et al. "dnaJ gene sequence-based assay for species identification and phylogenetic grouping in the genus Staphylococcus." International Journal of Systematic and Evolutionary Microbiology 57, no. 1 (2007): 25–30. http://dx.doi.org/10.1099/ijs.0.64205-0.
Full textPitkäranta, M., T. Meklin, A. Hyvärinen, et al. "Analysis of Fungal Flora in Indoor Dust by Ribosomal DNA Sequence Analysis, Quantitative PCR, and Culture." Applied and Environmental Microbiology 74, no. 1 (2007): 233–44. http://dx.doi.org/10.1128/aem.00692-07.
Full textZhang, Shao Xuan, Xin Rui Liu, Yun Hui Ling, Bo Chuan Wang, De Jun Sun, and Guang Zhu Lin. "Comparison of Chloroplast TrnL-F Sequences of 5 Common Potentilla Species in Jilin Province of China." Advanced Materials Research 554-556 (July 2012): 1730–33. http://dx.doi.org/10.4028/www.scientific.net/amr.554-556.1730.
Full textSpampinato, Claudia, and Darío Leonardi. "Molecular Fingerprints to IdentifyCandidaSpecies." BioMed Research International 2013 (2013): 1–10. http://dx.doi.org/10.1155/2013/923742.
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