Relevant bibliographies by topics / Sequence identity

Contents

  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers
  6. Reports

Academic literature on the topic 'Sequence identity'

Author: Grafiati
Published: 4 June 2021
Last updated: 26 July 2025

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Journal articles on the topic "Sequence identity"

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FREEMONT, PAUL, NANCY HOGG, and JONATHAN EDGEWORTH. "Sequence identity." Nature 339, no. 6225 (1989): 516. http://dx.doi.org/10.1038/339516b0.

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May, Alex C. W. "Percent Sequence Identity." Structure 12, no. 5 (2004): 737–38. http://dx.doi.org/10.1016/j.str.2004.04.001.

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Kwok, Anita Y. C., Jason T. Wilson, Michael Coulthart, Lai-King Ng, Lucy Mutharia, and Anthony W. Chow. "Phylogenetic study and identification of human pathogenicVibriospecies based on partialhsp60 gene sequences." Canadian Journal of Microbiology 48, no. 10 (2002): 903–10. http://dx.doi.org/10.1139/w02-089.

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The use of hsp60 gene sequences for phylogenetic study and identification of pathogenic marine vibrios was investigated. A 600-bp partial hsp60 gene was amplified by PCR and sequenced from 29 strains representing 15 Vibrio species within the family Vibrionaceae. Sequence comparison of the amplified partial hsp60 gene revealed 71–82% sequence identity among different Vibrio species and 96–100% sequence identity among epidemiologically distinct strains with the same species designation. This degree of discrimination allows unambiguous differentiation of all Vibrio species included in the current
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Mechanda, Subbaiah M., Bernard R. Baum, Douglas A. Johnson, and John T. Arnason. "Sequence assessment of comigrating AFLPTM bands in Echinacea — implications for comparative biological studies." Genome 47, no. 1 (2004): 15–25. http://dx.doi.org/10.1139/g03-094.

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The extent of sequence identity among clones derived from monomorphic and polymorphic AFLPTM polymorphism bands was quantified. A total of 79 fragments from a monomorphic band of 273 bp and 48 fragments from a polymorphic band of 159 bp, isolated from individuals belonging to different populations, varieties, and species of Echinacea, were cloned and sequenced. The monomorphic fragments exhibited above 90% sequence identity among clones within samples. Sequence identity within variety ranged from 82.78% to 94.87% and within species from 75.82% to 98.9% and was 57.97% in the genus. The polymorp
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Cook, Jonathan P., and Malcolm A. McCrae. "Sequence analysis of the guanylyltransferase (VP3) of group A rotaviruses." Journal of General Virology 85, no. 4 (2004): 929–32. http://dx.doi.org/10.1099/vir.0.19629-0.

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The RNA segment encoding the guanylyltransferase (VP3) from 12 group A rotavirus isolates has been sequenced following RT-PCR and molecular cloning of the full-length amplicons produced. Alignment of the derived amino acid sequences including those of the four VP3 sequences available from GenBank revealed two levels of sequence divergence. Virus isolates from humans showed greater than 94 % sequence identity, whereas those isolated from different mammalian species showed as low as 79 % sequence identity. The exceptions were avian virus isolates, which diverged ∼45 % from those of mammalian ori
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Willment, J. A., D. P. Martin, E. Van der Walt, and E. P. Rybicki. "Biological and Genomic Sequence Characterization of Maize streak virus Isolates from Wheat." Phytopathology® 92, no. 1 (2002): 81–86. http://dx.doi.org/10.1094/phyto.2002.92.1.81.

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Maize streak virus (MSV) is best known as the causal agent of maize streak disease. However, only a genetically uniform subset of the viruses within this diverse species is actually capable of producing severe symptoms in maize. Whereas these “maize-type” viruses all share greater than 95% sequence identity, MSV strains isolated from grasses may share as little as 79% sequence identity with the maize-type viruses. Here, we present the complete genome sequences and biological characterization of two MSV isolates from wheat that share ≈89% sequence identity with the maize-type viruses. Clonal po
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Brigido, M. M., and B. D. Stollar. "Two induced anti-Z-DNA monoclonal antibodies use VH gene segments related to those of anti-DNA autoantibodies." Journal of Immunology 146, no. 6 (1991): 2005–9. http://dx.doi.org/10.4049/jimmunol.146.6.2005.

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Abstract The cDNA for H and L chain V regions of two anti-Z-DNA mAb, Z22 and Z44, were cloned and sequenced. These are the first experimentally induced anti-nucleic acid antibody sequences available for comparison with autoantibody sequences. Z22 and Z44 are IgG2b and IgG2a antibodies from C57BL/6 mice. They recognize different facets of the Z-DNA structure. They both use VH10 family genes and share 95% sequence base sequence identity in the VH and leader sequences; however, they differ in the 5'-untranslated region of the VH mRNA, indicating they arise from different germline genes. Both use
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Kumar, Vikas, Neelkamal Sharma, Kusum Singal, and Arun Sharma. "A Wildlife Forensic Study for the Species Identification of Indian Blackbuck through Forensically Informative Nucleotide Sequencing (FINS)." Biosciences, Biotechnology Research Asia 15, no. 1 (2018): 175–79. http://dx.doi.org/10.13005/bbra/2621.

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Identification of exhibits obtained in wildlife cases usually presents challenging tasks for the forensic science investigators. This study describes a casework, where a degraded tissue sample was recovered from pathology department LUVAS University Hisar, Haryana to resolve the identity of the questioned sample. The mitochondrial DNA region of the questioned sample was amplified and sequenced using universal primers of cytochrome b gene to determine the forensically informative nucleotide sites to find the species identity. The obtained sequencing results were compared with the most homologou
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Coutinho, Luiz L., Lakshmi K. Matukumalli, Tad S. Sonstegard, et al. "Discovery and profiling of bovine microRNAs from immune-related and embryonic tissues." Physiological Genomics 29, no. 1 (2007): 35–43. http://dx.doi.org/10.1152/physiolgenomics.00081.2006.

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MicroRNAs are small ∼22 nucleotide-long noncoding RNAs capable of controlling gene expression by inhibiting translation. Alignment of human microRNA stem-loop sequences (mir) against a recent draft sequence assembly of the bovine genome resulted in identification of 334 predicted bovine mir. We sequenced five tissue-specific cDNA libraries derived from the small RNA fractions of bovine embryo, thymus, small intestine, and lymph node to validate these predictions and identify new mir. This strategy combined with comparative sequence analysis identified 129 sequences that corresponded to mature
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Tramontano, Anna. "Homology Modeling with Low Sequence Identity." Methods 14, no. 3 (1998): 293–300. http://dx.doi.org/10.1006/meth.1998.0585.

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Dissertations / Theses on the topic "Sequence identity"

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Li, Jinliang. "Mechanical unfolding and folding studies on proteins with high sequence identity but different conformations." Thesis, University of British Columbia, 2015. http://hdl.handle.net/2429/54795.

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Although a few mutations can radically shift the equilibrium between denatured state and native state of a protein, it is surprising that one mutation can switch one fold into another completely different fold. Two Streptococcus binding domains GA and GB could be mutated so that ultimately two completely different folds had only one different amino acid in their sequences. This experiment established a mutational pathway to switch a protein’s fold and function. In order to further understand the mechanism underlying this pathway, single molecule force spectroscopy was carried out using optical
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Hitchen, Yvette. "Development of a multiplex Sequence Specific Primer (SSP)-PCR system to identify forensically relevant calliphoride." University of Western Australia. Centre for Forensic Science, 2008. http://theses.library.uwa.edu.au/adt-WU2009.0032.

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From the entomological evidence occurring on and around a corpse it is possible to determine an estimated post-mortem interval (PMI). The critical step in this examination is the accurate identification of specimens collected ensuring the application of appropriate species-specific developmental data. Current molecular techniques in the identification of forensically important Calliphoridae species from the Australian region have been explored and found to be a highly significant and valuable area of research. The cytochrome oxidase genes in the mitochondrial genome have been shown to have suf
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Koo, Hyun Jo, Eric McDowell, Xiaoqiang Ma, et al. "Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids." BioMed Central, 2013. http://hdl.handle.net/10150/610084.

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BACKGROUND:Ginger (Zingiber officinale) and turmeric (Curcuma longa) accumulate important pharmacologically active metabolites at high levels in their rhizomes. Despite their importance, relatively little is known regarding gene expression in the rhizomes of ginger and turmeric.RESULTS:In order to identify rhizome-enriched genes and genes encoding specialized metabolism enzymes and pathway regulators, we evaluated an assembled collection of expressed sequence tags (ESTs) from eight different ginger and turmeric tissues. Comparisons to publicly available sorghum rhizome ESTs revealed a total of
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Toda, Nicholas Rafael Tetsuo. "Analysis of the sequence features contributing to centromere organisation and CENP-A positioning and incorporation." Thesis, University of Edinburgh, 2015. http://hdl.handle.net/1842/16174.

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Centromere identity is integral for proper kinetochore formation and chromosome segregation. In most species chromosomes have a centromere at a defined locus that is propagated across generations. The histone H3 variant CENP-A acts as an epigenetic mark for centromere identity in most species studied. CENP-A is absent from the inactivated centromere on dicentric chromosomes and present at neocentromeres that form on non-centromeric sequences. Thus, the canonical centromere sequence is neither necessary nor sufficient for centromere function. Nevertheless, centromeres are generally associated w
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Frisk, Christoffer. "Automated protein-family classification based on hidden Markov models." Thesis, Uppsala universitet, Bioinformatik, 2015. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-252372.

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The aim of the project presented in this paper was to investigate the possibility toautomatically sub-classify the superfamily of Short-chain Dehydrogenase/Reductases (SDR).This was done based on an algorithm previously designed to sub-classify the superfamily ofMedium-chain Dehydrogenase/Reductases (MDR). While the SDR-family is interesting andimportant to sub-classify there was also a focus on making the process as automatic aspossible so that future families also can be classified using the same methods.To validate the results generated it was compared to previous sub-classifications done o
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Wang, Hsiao-Ching. "Sustaining the creative identity of a Taiwanese artist during motherhood : a sequence of six artworks within an installation." Thesis, University of Brighton, 2009. https://research.brighton.ac.uk/en/studentTheses/737811ab-7994-4b2b-93e7-d3a1b6d58530.

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This practice-based PhD thesis examines the proposition that during early motherhood an artist can establish visual strategies for sustaining a creative identity to counteract the stereotypical role of a mother in the patriarchal society of Taiwan. The thesis comprises six artworks, consisting of photographic self-portraits and related boxes, within an installation, together with a written component and an Artist’s Book.
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Loh, Chang-Yuan. "Factors influencing the decision-making of third party consultants in the context of evaluating escalation of commitment." Thesis, The University of Sydney, 2014. http://hdl.handle.net/2123/12132.

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Successful management of capital investment projects is vital to organisational performance. However, research shows that managers are prone to continue investment in projects in the face of significant negative accounting feedback – this is known as the ‘escalation of commitment’ phenomenon. Escalation behaviour is undesirable as it diverts resources from more economically valuable investments and can lead to sub-optimal project outcomes. This thesis reports two experiments that investigate how four factors can help reduce escalation of commitment to unprofitable capital investment projects.
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Buchholz, Frank, Anja Nitzsche, Maciej Paszkowski-Rogacz, et al. "RAD21 Cooperates with Pluripotency Transcription Factors in the Maintenance of Embryonic Stem Cell Identity." Saechsische Landesbibliothek- Staats- und Universitaetsbibliothek Dresden, 2016. http://nbn-resolving.de/urn:nbn:de:bsz:14-qucosa-191596.

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For self-renewal, embryonic stem cells (ESCs) require the expression of specific transcription factors accompanied by a particular chromosome organization to maintain a balance between pluripotency and the capacity for rapid differentiation. However, how transcriptional regulation is linked to chromosome organization in ESCs is not well understood. Here we show that the cohesin component RAD21 exhibits a functional role in maintaining ESC identity through association with the pluripotency transcriptional network. ChIP-seq analyses of RAD21 reveal an ESC specific cohesin binding pattern that is
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Conlin, Christopher Arthur. "Characterization of the Salmonella typhimuriumopdA gene, encoding oligopeptidase A: Nucleotide sequence; identity with the Escherichia coliprlC gene; and its role in bacteriophage P22 development." Case Western Reserve University School of Graduate Studies / OhioLINK, 1992. http://rave.ohiolink.edu/etdc/view?acc_num=case1055962404.

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Buchholz, Frank, Anja Nitzsche, Maciej Paszkowski-Rogacz, et al. "RAD21 Cooperates with Pluripotency Transcription Factors in the Maintenance of Embryonic Stem Cell Identity." Public Library of Science, 2011. https://tud.qucosa.de/id/qucosa%3A29134.

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For self-renewal, embryonic stem cells (ESCs) require the expression of specific transcription factors accompanied by a particular chromosome organization to maintain a balance between pluripotency and the capacity for rapid differentiation. However, how transcriptional regulation is linked to chromosome organization in ESCs is not well understood. Here we show that the cohesin component RAD21 exhibits a functional role in maintaining ESC identity through association with the pluripotency transcriptional network. ChIP-seq analyses of RAD21 reveal an ESC specific cohesin binding pattern that is
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Books on the topic "Sequence identity"

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Grigor'ev, Anatoliy, and Evgeniy Isaev. Methods and algorithms of data processing. INFRA-M Academic Publishing LLC., 2020. http://dx.doi.org/10.12737/1032305.

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The tutorial deals with selected methods and algorithms of data processing, the sequence of solving problems of processing and analysis of data to create models behavior of the object taking into account all the components of its mathematical model. Describes the types of technological methods for the use of software and hardware for solving problems in this area. The algorithms of distributions, regressions vremenny series, transform them with the aim of obtaining mathematical models and prediction of the behavior information and economic systems (objects).
 The second edition is supplem
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Haliday, Kris. Lot S29 Resources for Teachers: Identity and Language Diversity Assignment Sequence. Independently Published, 2020.

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Haliday, Kris. Lot S29 Resources for Teachers: Social Construction of Race, Identity, and Language Diversity Assignment Sequence. Independently Published, 2020.

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Comprehension Matters Identify Sequence Grade 8 / Level H. Options Publishing, 2008.

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Mortimer, Anthony. Shakespeare and Italian Poetry. Edited by Jonathan Post. Oxford University Press, 2013. http://dx.doi.org/10.1093/oxfordhb/9780199607747.013.0019.

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Shakespeare’s poetry gains much by being read in the light of the Italian texts that founded both the genres he exploits: the Ovidian erotic narrative and the sonnet sequence. Italian poets such as Anguillara and Dolce had already adapted episodes from the Metamorphoses for stanzaic poems and their treatment of the Venus and Adonis story establishes the essential contours of Shakespeare’s version. Reading the Sonnets as part of a tradition that derives not only from Petrarch’s Canzoniere but also from Dante’s Vita Nuova illuminates such aspects of the genre as the relation between putative aut
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Jarjour, Tala. Suryaniness. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780190635251.003.0005.

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This chapter, and the next two, considers foundational notions in value perception and construction. The chapters form a sequence, about three closely entwined components of value: identity, authority, and performance. They suggest that local modes of value may be understood in music through the performative articulation of specific processes of identity and authority negotiation. Those processes take place where sociality intersects with deeper forms of value agreement. This chapter is about Suryaniness, which it explains as a performed sense of identity in two ways: first, through the associ
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Avilez, GerShun. The Demands on Reproduction. University of Illinois Press, 2017. http://dx.doi.org/10.5406/illinois/9780252040122.003.0004.

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This chapter tracks how artists investigate the discourse of reproduction not simply to explore dual meanings, but rather to consider how the politicized concept of reproduction functions as a contested means for conveying gender identity. In her painted quilt sequence The Slave Rape Series, Faith Ringgold uses reproduction to establish a visual interrogation of Black gender identity and to probe the implications of the commitment to reproductive paradigms. Her paintings of the pregnant body create the opportunity to recast the images circulating in political discourse, which favor restrictive
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Davison, Annette. Title Sequences for Contemporary Television Serials. Edited by John Richardson, Claudia Gorbman, and Carol Vernallis. Oxford University Press, 2013. http://dx.doi.org/10.1093/oxfordhb/9780199733866.013.0036.

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This article appears in theOxford Handbook of New Audiovisual Aestheticsedited by John Richardson, Claudia Gorbman, and Carol Vernallis. This chapter focuses on the main title sequences of recent television serials commissioned by the North American premium cable channel Home Box Office. At around 90 seconds’ duration, these sequences buck the trend much in evidence elsewhere on television of minimizing such elements drastically and placing such identifiers later in the show. An exploration of the functions and characteristics of television title sequences is followed by an introduction to com
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Tucker, Herbert F. Shakespearean Being. Edited by Jonathan Post. Oxford University Press, 2013. http://dx.doi.org/10.1093/oxfordhb/9780199607747.013.0022.

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Victorian poetry took Shakespeare up as both a guide and a challenge. The example of his sonnets and soliloquies stood behind the era’s pre-eminent formal developments in, respectively, lyric sequence and dramatic monologue. Phrasal allusion to Shakespeare was ubiquitous, often ingenious; deeper down, poets invoked him when exploring, or just revering, mysteries of identity made unprecedentedly urgent by the Victorian association between lyrical poetry and individual subjectivity. To this article of literary faith the poetic impersonality underwriting Shakespeare’s dramatic versatility posed a
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Briggs, Andrew, Hans Halvorson, and Andrew Steane. How is science to be carried forward, and its conclusions reported? Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198808282.003.0004.

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The chapter appraises science as an intellectual activity that is appropriately carried out on its own terms. Consequently, it is not appropriate to introduce references to God as a component part of a mathematical proof, nor of a system of forces in the natural world, nor of a sequence of impersonal processes in the biosphere. This does not mean that it is inappropriate to be thankful to God and to celebrate all these aspects of the world as gifts. They can be employed as opportunities to express appreciation through studying and understanding them better in their own right. Nevertheless, the
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Book chapters on the topic "Sequence identity"

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Zea, Diego Javier, Elin Teppa, and Cristina Marino-Buslje. "Easy Not Easy: Comparative Modeling with High-Sequence Identity Templates." In Methods in Molecular Biology. Springer US, 2023. http://dx.doi.org/10.1007/978-1-0716-2974-1_5.

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Ma, Huidong, Cheng Zhong, Hui Sun, Danyang Chen, and Haixiang Lin. "ricME: Long-Read Based Mobile Element Variant Detection Using Sequence Realignment and Identity Calculation." In Bioinformatics Research and Applications. Springer Nature Singapore, 2023. http://dx.doi.org/10.1007/978-981-99-7074-2_13.

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Whitmire, Jeannette M., and D. Scott Merrell. "Successful Culture Techniques for Helicobacter Species: Verification of Helicobacter Identity Using 16S rRNA Gene Sequence Analysis." In Helicobacter Species. Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-005-2_6.

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Muhire, Brejnev Muhizi, Philippe Roumagnac, Arvind Varsani, and Darren Patrick Martin. "Sequence Demarcation Tool (SDT), a Free User-Friendly Computer Program Using Pairwise Genetic Identity Calculations to Classify Nucleotide or Amino Acid Sequences." In Methods in Molecular Biology. Springer US, 2025. https://doi.org/10.1007/978-1-0716-4454-6_9.

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Capshaw, Katharine. "Chapter 12. The mirror and multiplicity." In Children’s Literature, Culture, and Cognition. John Benjamins Publishing Company, 2023. http://dx.doi.org/10.1075/clcc.17.12cap.

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Black creators in the 1970s used the photographic picturebook to recreate black identity and history. Whether tethering images to the logic of the alphabet, as do Yusef Iman and Jean Carey Bond, or deploying images to disrupt narratives of American history, as do Toni Morrison and June Jordan, creators recognized the multiple aesthetic and political possibilities engendered by an assemblage of images. The photograph seeks to mirror by fixing places and people on the page; and some narratives productively pull against closure, embracing instead the ongoing process of knowing black history throu
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Corsellini, Lorenzo. "La mancanza vocazionale, le dimissioni volontarie e la crisi delle organizzazioni cooperative: una ricerca esplorativa." In Studies on Adult Learning and Education. Firenze University Press, 2024. http://dx.doi.org/10.36253/979-12-215-0504-7.28.

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For several years we have been witnessing a gradual and steady increase in resignations from jobs, there are nearly 2 million 200 thousand resignations recorded in 2022, an increase of 13.8 percent compared to 2021 when there was a total of 1 million 930 thousand. A phenomenon that affects sectors across the board. The "large resignations," have also affected, in part, personal services. Young people today express life plans that are less work-centered, and the traditional sequence: end of studies, acquisition of employment, independent living and creation of a new family unit is no longer as
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Cooper, Scott, and Anton Sanderfoot. "Sequence Information to Identify Motifs." In Molecular Life Sciences. Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4614-1531-2_5.

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Szibor, R., I. Plate, E. Kirches, and D. Krause. "Mixing and Thermic Treatment of Mitochondrial PCR Fragments Reveal Sequence Differences by Heteroduplex Formation -A Rapid Method for Forensic Identity Testing." In 16th Congress of the International Society for Forensic Haemogenetics (Internationale Gesellschaft für forensische Hämogenetik e.V.), Santiago de Compostela, 12–16 September 1995. Springer Berlin Heidelberg, 1996. http://dx.doi.org/10.1007/978-3-642-80029-0_3.

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"Rab3 protein family." In Secretory Pathway, edited by Jonathan Rothblatt, Peter Novick, and Tom H. Stevens. Oxford University PressOxford, 1994. http://dx.doi.org/10.1093/oso/9780198599425.003.0125.

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Abstract The cDNA sequences of rab3A (smg p25A)1,2,3, rab3B (smg p25B)3A and rab3C (smg p25C)3 predict proteins of 25.0 kDa, 24.7 kDa and 26.0 kDa, respectively (GenBank accession numbers M19885, M19886, and M19887). Com-parison of the bovine sequences revealed that rab3A shares 77% amino acid sequence identity with rab3B and 85% with rab3C. Rab3B and rab3C exhibit 80% sequence identity. In addition, a Drosophila homolog has been cloned and sequenced5 that is slightly more related to rab3A (78% identity) than to rab3B (76% identity), demonstrating a high degree of evolutionary conservation.
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Koch, H. L. E. "Calrcticulin." In Secretory Pathway. Oxford University PressOxford, 1994. http://dx.doi.org/10.1093/oso/9780198599425.003.0050.

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Abstract The nucleotide sequences of cDNAs encoding calreticulins from mouse3, rat3, rabbit9 and nematode10 (GenBank accession numbers X14926, X53363, J05138, X59589) each reveal an open reading frame encoding a protein of approximately 400 amino acids including an N-terminal signal sequence and the (-terminal tetrapeptide KDEL (HOEL in the nematode protein) associated with ER retrieval11, The murine and nematode proteins display 61% sequence identity.
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Conference papers on the topic "Sequence identity"

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Shree Money A, Mangayarkarasi Ahnandha, Pushpitha Shree P, and G. Brindha. "Image Restoration through InceptionResNetV2: Unveiling the True Identity within Deepfake Detected Sequences using Subsequent Deepfake Modifier." In 2024 International Conference on IoT, Communication and Automation Technology (ICICAT). IEEE, 2024. https://doi.org/10.1109/icicat62666.2024.10923429.

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Johnson, Richard. "Sequencing the Oil Field Microbiome – Can Metagenomics Help Combat MIC?" In CORROSION 2015. NACE International, 2015. https://doi.org/10.5006/c2015-05738.

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Abstract Corrosion costs between 1–5% of global gross domestic product annually. Microbiologically influenced corrosion is believed to contribute to around 20% of this. Due to the complexity of the microbial populations involved, the mechanisms of many of these processes are still poorly understood. Culture-based methods such as most probable number technique (MPN) and isolation only reveal a very small proportion of the microorganisms present, meaning that potentially problematic microorganisms are overlooked and not suitably targeted for mitigation. Due to revolutionary advances in DNA seque
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Larsen, Jan, Torben Lund Skovhus, Mikkel Agerbæk, Trine Rolighed Thomsen, and Per Halkjær Nielsen. "Bacterial Diversity Study Applying Novel Molecular Methods on Halfdan Produced Waters." In CORROSION 2006. NACE International, 2006. https://doi.org/10.5006/c2006-06668.

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Abstract Nitrate has been added to the injection water in the Halfdan field since January 2001 in order to prevent reservoir souring. In early 2005, seawater breakthrough had occurred in four wells on Halfdan, and nitrate breakthrough was also detected. This resulted in a shift to nitrate utilizing bacteria in the produced water, confirming the impact of nitrate and the need to continuously monitor and optimize the treatment. In this paper we demonstrate that key bacterial populations can be identified by applying a range of novel molecular methods. Molecular techniques were implemented on wat
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Ge, Jing. "Emoji Sequence Use in Enacting Personal Identity." In WWW '19: The Web Conference. ACM, 2019. http://dx.doi.org/10.1145/3308560.3316545.

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Chien-Hung Huang, K. T. Chao, and Ka-Lok Ng. "Protein complexes subunits interaction topology and sequence identity." In 2011 3rd International Conference on Computer Research and Development (ICCRD). IEEE, 2011. http://dx.doi.org/10.1109/iccrd.2011.5764009.

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Sia, Jye Ying, and Chee Kit Ho. "Catalan’s identity and sum of k-Lucas sequence." In INNOVATION AND ANALYTICS CONFERENCE AND EXHIBITION (IACE 2015): Proceedings of the 2nd Innovation and Analytics Conference & Exhibition. AIP Publishing LLC, 2015. http://dx.doi.org/10.1063/1.4937073.

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Crisdayanti, Ida Ayu Putu Ari, and Jee-Hyong Lee. "Sequence to Sequence CycleGAN for Non-Parallel Sentiment Transfer with Identity Loss Pretraining." In RACS '20: International Conference on Research in Adaptive and Convergent Systems. ACM, 2020. http://dx.doi.org/10.1145/3400286.3418249.

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RANGWALA, HUZEFA, and GEORGE KARYPIS. "fRMSDAlign: PROTEIN SEQUENCE ALIGNMENT USING PREDICTED LOCAL STRUCTURE INFORMATION FOR PAIRS WITH LOW SEQUENCE IDENTITY." In The 6th Asia-Pacific Bioinformatics Conference. PUBLISHED BY IMPERIAL COLLEGE PRESS AND DISTRIBUTED BY WORLD SCIENTIFIC PUBLISHING CO., 2007. http://dx.doi.org/10.1142/9781848161092_0014.

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Zhang, Tianyi, Gaurav Gupta, Aditya Desai, and Anshumali Shrivastava. "IDentity with Locality: An Ideal Hash for Gene Sequence Search." In KDD '25: The 31st ACM SIGKDD Conference on Knowledge Discovery and Data Mining. ACM, 2025. https://doi.org/10.1145/3690624.3709233.

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Yang, Jinzhu, Wei Zhou, Wanhui Qian, Jizhong Han, and Songlin Hu. "Topic Sequence Embedding for User Identity Linkage from Heterogeneous Behavior Data." In ICASSP 2021 - 2021 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP). IEEE, 2021. http://dx.doi.org/10.1109/icassp39728.2021.9415111.

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Reports on the topic "Sequence identity"

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Wackett, Lawrence, Raphi Mandelbaum, and Michael Sadowsky. Bacterial Mineralization of Atrazine as a Model for Herbicide Biodegradation: Molecular and Applied Aspects. United States Department of Agriculture, 1999. http://dx.doi.org/10.32747/1999.7695835.bard.

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Atrazine is a broadly used herbicide in agriculture and it was used here as a model to study the biodegradation of herbicides. The bacterium Pseudomonas sp. ADP metabolizes atrazine to carbon dioxide and ammonia and chloride. The genes encoding atrazine catabolism to cyanuric acid were cloned and expressed in Escherichia coli. The genes were designated atzA, atzB and atzC. Each gene was sequenced. The enzyme activities were characterized. AtzA is atrazine chlorohydrolase which takes atrazine to hydroxyatrizine. AtzB is hydroxyatrazine N-ethylaminohydrolase which produces N-isopropylammelide an
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Steffenson, B. J., I. Mayrose, Gary J. Muehlbauer, and A. Sharon. ing and comparative sequence analysis of powdery mildew and leaf rust resistance gene complements in wild barley. United States-Israel Binational Agricultural Research and Development Fund, 2021. http://dx.doi.org/10.32747/2021.8134173.bard.

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Our overall, long-term goal is to exploit the genetic diversity present in cereal wild relatives for the development of cultivars with durable disease resistance. Our specific objectives for this proposal were to: 1) Utilize Association Genetics Resistance Gene Enrichment Sequencing (AgRenSeq) to identify and clone powdery mildew and leaf rust resistance gene complements in wild barley and 2) Conduct comparative sequence analyses of the cloned resistance genes to elucidate the basis of their specificity and evolution. The deployment of resistant cultivars is the most effective, economically ef
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Jordan, Ramon L., Abed Gera, Hei-Ti Hsu, Andre Franck, and Gad Loebenstein. Detection and Diagnosis of Virus Diseases of Pelargonium. United States Department of Agriculture, 1994. http://dx.doi.org/10.32747/1994.7568793.bard.

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Pelargonium (Geranium) is the number one pot plant in many areas of the United States and Europe. Israel and the U.S. send to Europe rooted cuttings, foundation stocks and finished plants to supply a certain share of the market. Geraniums are propagated mainly vegetatively from cuttings. Consequently, viral diseases have been and remain a major threat to the production and quality of the crop. Among the viruses isolated from naturally infected geraniums, 11 are not specific to Pelargonium and occur in other crops while 6 other viruses seem to be limited to geranium. However, several of these v
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Banai, Menachem, and Gary Splitter. Molecular Characterization and Function of Brucella Immunodominant Proteins. United States Department of Agriculture, 1993. http://dx.doi.org/10.32747/1993.7568100.bard.

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The BARD project was a continuation of a previous BARD funded research project. It was aimed at characterization of the 12kDa immunodominant protein and subsequently the cloning and expression of the gene in E. coli. Additional immunodominant proteins were sought among genomic B. abortus expression library clones using T-lymphocyte proliferation assay as a screening method. The 12kDa protein was identified as the L7/L12 ribosomal protein demonstrating in the first time the role a structural protein may play in the development of the host's immunity against the organism. The gene was cloned fro
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Gelb, Jr., Jack, Yoram Weisman, Brian Ladman, and Rosie Meir. Identification of Avian Infectious Brochitis Virus Variant Serotypes and Subtypes by PCR Product Cycle Sequencing for the Rational Selection of Effective Vaccines. United States Department of Agriculture, 2003. http://dx.doi.org/10.32747/2003.7586470.bard.

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Objectives 1. Determine the serotypic identities of 40 recent IBV isolates from commercial chickens raised in the USA and Israel. 2. Sequence all IBV field isolates using PCR product cycle sequencing and analyze their S 1 sequence to detennine their homology to other strains in the Genbank and EMBL databases. 3. Select vaccinal strains with the highest S 1 sequence homology to the field isolates and perform challenge of immunity studies in chickens in laboratory trials to detennine level of protection afforded by the vaccines. Background Infectious bronchitis (IB) is a common, economically imp
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Beachy, R. N. [Genetic engineering with a gene encoding a soybean storage protein to identify DNA sequences to control its expression]: Annual report, 1993. Office of Scientific and Technical Information (OSTI), 1993. http://dx.doi.org/10.2172/10133802.

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Harman, Gary E., and Ilan Chet. Discovery and Use of Genes and Gene Combinations Coding for Proteins Useful in Biological Control. United States Department of Agriculture, 1994. http://dx.doi.org/10.32747/1994.7568787.bard.

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The objectives of the research in this proposal were to (A) identify synergy among proteins that provide enhanced activity over single proteins for control of plant pathogenic fungi, (B) clone and characterize genetic sequences coding for proteins with ability to control pathogenic fungi, (C) produce transgenic organisms with enhanced biocontrol ability using genes and gene combinations and determine their efficiency in protecting plants against plant pathogenic fungi. A related objective was to produce disease-resistant plants. Fungal cell wall degrading enzymes from any source are strongly s
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Cohen, Yuval, Christopher A. Cullis, and Uri Lavi. Molecular Analyses of Soma-clonal Variation in Date Palm and Banana for Early Identification and Control of Off-types Generation. United States Department of Agriculture, 2010. http://dx.doi.org/10.32747/2010.7592124.bard.

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Date palm (Phoenix dactylifera L.) is the major fruit tree grown in arid areas in the Middle East and North Africa. In the last century, dates were introduced to new regions including the USA. Date palms are traditionally propagated through offshoots. Expansion of modern date palm groves led to the development of Tissue Culture propagation methods that generate a large number of homogenous plants, have no seasonal effect on plant source and provide tools to fight the expansion of date pests and diseases. The disadvantage of this procedure is the occurrence of off-type trees which differ from t
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Ahmad, Farida, Robert Anderson, Jodi Cisewski, and Paul Sutton. Identification of Deaths With Post-acute Sequelae of COVID-19 From Death Certificate Literal Text: United States, January 1, 2020–June 30, 2022. National Center for Health Statistics (U.S.), 2022. http://dx.doi.org/10.15620/cdc:121968.

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Lers, Amnon, and Pamela J. Green. Analysis of Small RNAs Associated with Plant Senescence. United States Department of Agriculture, 2013. http://dx.doi.org/10.32747/2013.7593393.bard.

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Senescence is an agriculturally significant process due to its negative impact to crop yield and postharvest quality. The genetic regulatory systems controlling senescence induction and progress respond to both developmental and environmental stress signals and involve numerous gene expression changes. Knowledge about the key molecular factors which control senescence is very limited. MicroRNAs (miRNAs) are a class of small RNAs which typically function by guiding cleavage of target messenger RNAs. They have been shown to play major roles in a variety of plant processes including development,
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