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Books on the topic 'Sequencing method'

Author: Grafiati

Published: 4 June 2021

Last updated: 9 February 2022

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1

Lindamood, Patricia C. The Lindamood phoneme sequencing program for reading, spelling, and speech: LiPS : teacher's manual for the classroom and clinic. 3rd ed. Pro-Ed, 1998.

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2

Munshi, Anjana. DNA sequencing: Methods and applications. InTech, 2012.

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3

Alphey, Luke. DNA sequencing from experimental methods to bioinformatics. Springer, 1997.

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4

Balancing and sequencing of assembly lines. 2nd ed. Physica-Verlag, 1999.

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5

High-throughput next generation sequencing: Methods and applications. Springer, 2011.

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6

Măndoiu, Ion, and Alexander Zelikovsky, eds. Computational Methods for Next Generation Sequencing Data Analysis. John Wiley & Sons, Inc., 2016. http://dx.doi.org/10.1002/9781119272182.

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7

Kahl, Günter, and Matthias Harbers. Tag-based next generation sequencing. Wiley-Blackwell, 2012.

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8

Neuman, Frank. Analysis of sequencing and scheduling methods for arrival traffic. National Aeronautics and Space Administration, Ames Research Center, 1990.

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9

Scholl, Armin. Balancing and sequencing of assembly lines. Physica-Verlag, 1995.

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10

Janitz, Michal. Next-generation genome sequencing: Towards personalized medicine. Wiley-VCH, 2008.

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11

Liu, Zhanjiang. Next generation sequencing and whole genome selection in aquaculture. Wiley-Blackwell, 2011.

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12

author, Belazzougui Djamal, Cunial Fabio author, and Tomescu Alexandru I. author, eds. Genome-scale algorithm design: Biological sequence analysis in the era of high-throughput sequencing. University Printing House, 2015.

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13

Sen, Anup K. Graph search methods for non-order-preserving evaluation functions: Applications to job sequencing problems. Indian Institute of Management, 1995.

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14

The Hal Leonard Recording Method - Book Four: Sequencing Samples and Loops. Hal Leonard, 2008.

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15

The Lindamood - Phoneme Sequencing Program for Reading, Spelling, and Speech. ProEd, 1998.

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16

Munshi, Anjana, ed. DNA Sequencing - Methods and Applications. InTech, 2012. http://dx.doi.org/10.5772/2158.

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17

Nakhla-Manoli, Magda. The effect of sequencing instruction on form and function on the learning of the forms and functions of Passe compose and imparfait by grade 11 French immersion students. 2001.

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18

(Editor), Colin A. Graham, and Alison J. M. Hill (Editor), eds. DNA Sequencing Protocols (Methods in Molecular Biology). 2nd ed. Humana Press, 2001.

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19

(Editor), Colin A. Graham, and Alison J.M. Hill (Editor), eds. DNA Sequencing Protocols (Methods in Molecular Biology). 2nd ed. Humana Press, 2001.

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20

Pont Evksinskiy – 2021 : materials of XII All-Russian scientific and applied conference for young scientists on the water systems problems, dedicated to the 150 th anniversary of the Sevastopol Biological Station ‒ A. O. Kovalevsky Institute of Biology of the Southern Seas of RAS, Sevastopol, 20–24 September, 2021. IBSS, 2021. http://dx.doi.org/10.21072/978-5-6044865-8-0.

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The book includes materials of young scientists from Russia and the Republic of Abkhazia, revealing various aspects of modern marine and freshwater biology. Abstracts highlight the results of scientific research in the field of population dynamics and genetic differentiation of aquatic organisms, the features of their life cycle. The book present works on the influence of abiotic and anthropogenic environmental factors on the physiological status of aquaculture species. A number of works describes the capabilities of modern research methods applied in marine and freshwater biological studies, such as metabarcoding, "frame" and "rake method" for detecting beach debris, NGS sequencing, and satellite monitoring. In addition, the book reveals the features of the functioning of coastal ecosystems. The book is valuable for young scientists in the field of marine and freshwater biology, water ecology, biotechnology, aquaculture, marine ecology and zoology

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21

H, Schlesinger David, ed. Macromolecular sequencing and synthesis: Selected methods and applications. A.R. Liss, 1988.

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22

DNA Sequencing Protocols Methods in Molecular Biology Paperback. Humana Press, 2012.

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23

Schlesinger, D. H. Macromolecular Sequencing and Synthesis: Selected Methods and Applications. John Wiley & Sons Inc, 1988.

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24

Măndoiu, Ion, and Alexander Zelikovsky. Computational Methods for Next Generation Sequencing Data Analysis. Wiley & Sons, Incorporated, John, 2016.

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25

Harbers, Matthias, and Guenter Kahl. Tag-Based Next Generation Sequencing. Wiley & Sons, Incorporated, John, 2011.

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26

K, Nunnally Brian, ed. Analytical techniques in DNA sequencing. Taylor & Francis, 2005.

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27

Nunnally, Brian K. Analytical Techniques in DNA Sequencing. Taylor & Francis Group, 2005.

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28

Li, Li, Xiangdong Wang, Jiaqiang Zhang, Buwei Yu, and Yiming Zeng. Single-cell Sequencing and Methylation: Methods and Clinical Applications. Springer, 2020.

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29

Jan, Kieleczawa, ed. DNA sequencing: Isolation and preparation techniques. Jones and Bartlett Publishers, 2006.

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30

Center, Lewis Research, ed. Application of a hybrid generation/utility assessment heuristic to a class of scheduling problems. Lewis Research Center, 1989.

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31

Next-Generation Genome Sequencing: Towards Personalized Medicine. Wiley & Sons, Limited, John, 2008.

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32

Janitz, Michal. Next-Generation Genome Sequencing: Towards Personalized Medicine. Wiley & Sons, Incorporated, John, 2011.

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33

Janitz, Michal. Next-Generation Genome Sequencing: Towards Personalized Medicine. Wiley & Sons, Incorporated, John, 2011.

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34

Janitz, Michal. Next-Generation Genome Sequencing: Towards Personalized Medicine. Wiley & Sons, Incorporated, John, 2008.

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35

Jan, Kieleczawa, ed. DNA sequencing III: Dealing with difficult templates. Jones and Bartlett Publishers, 2009.

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36

1947-, Kricka Larry J., ed. Nonisotopic probing, blotting, and sequencing. 2nd ed. Academic Press, 1995.

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37

Taberlet, Pierre, Aurélie Bonin, Lucie Zinger, and Eric Coissac. DNA metabarcoding data analysis. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198767220.003.0008.

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DNA metabarcoding generates huge amounts of data containing noise introduced by molecular methods. Chapter 8 “DNA metabarcoding data analysis” discusses the analytic steps and available software to curate and evaluate DNA metabarcoding data prior to final ecological analyses. It provides command lines to perform primary analyses of Illumina sequencing data with the OBITools, ranging from read assignment to samples to the formation of molecular operational taxonomic units (MOTUs) and their assignment to a taxon through comparison against reference databases. Chapter 8 also develops several methods to further curate sequencing data from contaminants or dysfunctional PCRs by using DNA extraction, PCR, and sequencing blank controls as well as PCR/biological replicates. It also presents several classical analyses to ensure that the diversity of the sample or the study site is appropriately covered. Finally, this chapter considers what conclusions on biodiversity and ecological processes can be really drawn from metabarcoding data.

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38

Kricka, Larry J. Nonisotoic Probing, Blotting, and Sequencing, Second Edition. Academic Press, 1995.

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39

Kricka, Larry J. Nonisotoic Probing, Blotting, and Sequencing, Second Edition. 2nd ed. Academic Press, 1995.

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40

Biological Identification: DNA Amplification and Sequencing, Optical Sensing, Lab-On-Chip and Portable Systems. Elsevier Science & Technology, 2014.

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41

Taberlet, Pierre, Aurélie Bonin, Lucie Zinger, and Eric Coissac. The future of eDNA metabarcoding. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198767220.003.0019.

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Environmental DNA-based research is undergoing rapid developments, but its democratization in basic and applied research remains hampered by the biases introduced by molecular approaches, the difficulties in estimating absolute organisms’ abundances, and a lack of general consensus in molecular protocols. Chapter 19 “The future of eDNA metabarcoding” provides an overview of these current challenges and discusses how shotgun sequencing, capture-based methods, inclusion of internal standards, and development of new data repositories could alleviate these limits and facilitate cross-experiments comparisons. This chapter finally turns to open questions on the potentiality of new sequencing methods and proposes directions to improve biodiversity estimates and ecological inferences and predictions from eDNA data, and ultimately stimulate further developments and integration of eDNA metabarcoding into academic and operational ecological research and monitoring.

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42

Bacterial Artificial Chromosomes: Volume 1: Library Construction, Physical Mapping, and Sequencing (Methods in Molecular Biology). Humana Press, 2004.

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43

Money, Nicholas P. 3. Microbial genetics and molecular microbiology. Oxford University Press, 2014. http://dx.doi.org/10.1093/actrade/9780199681686.003.0003.

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Cell structures and metabolic processes are specified by genes. The genomes of bacteria, archaea, and eukaryotic microorganisms are encoded in double-stranded helices of DNA. ‘Genetics and molecular microbiology’ explains that advances in sequencing techniques and the development of automated sequencing methods have allowed scientists to sequence the genomes of 4,000 bacterial genomes, 200 archaea, and 200 eukaryotes. Genome sizes vary a great deal within each category of microorganism and the largest prokaryote genomes overlap the smallest eukaryote genomes. Natural mutations in microorganisms play a primary role in evolution. Reproduction in prokaryotes is always asexual, whereas mechanisms of sexual reproduction have been studied in eukaryotic microorganisms belonging to all of the supergroups.

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44

Applications Of Next Generation Sequencing In Cancer Research Vol 1 Decoding The Cancer Genome. Springer-Verlag New York Inc., 2013.

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45

Riley, Peter. The role of the microbiology laboratory in antimicrobial stewardship. Oxford University Press, 2016. http://dx.doi.org/10.1093/med/9780198758792.003.0010.

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Microbiology laboratories play an important role in antimicrobial stewardship at the level of individual patients and the population as a whole. When empiric therapy has been started, rapid results can lead to earlier targeted treatment. Accumulated results of susceptibility tests can be analysed and used to generate local or national guidelines on empiric treatment and prophylaxis. Several methods can be used to determine microbial identity and antimicrobial susceptibility, including traditional culture-based methods and newer molecular methods such as matrix-assisted laser desorption ionization time-of-flight (MALDI-TOF) mass spectrometry, polymerase chain reaction (PCR), and whole-genome sequencing. These methods and potential advantages are reviewed. Before results are reported, expert rules are applied and results edited. At this point the laboratory can influence prescribing practices.

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46

Panosyan, Hovik. Molecular bacteriology laboratory works. YSU Publishing House, 2020. http://dx.doi.org/10.46991/ysuph/9785808424623.

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The training manual includes information about total nucleic acids (DNA and RNA) from pure soil water samples, genomic RNA and plasmid DNA separation from pure bacterial cultures, quantitative DNA testing, quantitative phylogenetic testing. Methods of cloning, sequencing, bioinformatics analysis of the obtained sequences are presented. The manual includes brief theoretical information covering the topic, laboratory works, as well as tasks for their implementation. This unique manual of molecular microbiology laboratory works in Armenian language is intended for students, PhD students specialized in the field of Biology.

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47

Kotzer, Katrina E., and Sarah E. Kerr. Molecular Technologies and Test Issues. Oxford University Press, 2017. http://dx.doi.org/10.1093/med/9780190604929.003.0005.

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Molecular genetic testing has been around since the discovery and offering of clinical testing for the first gene sequenced. However, in recent years the methods and scope of molecular genetic testing have evolved significantly to encompass next-generation sequencing, multigene panels, and whole exome and genome testing. With this evolution in molecular methods, the nomenclature and variant evaluation and annotation processes are crucial for the systematic and standard interpretation of molecular test results. This chapter will provide the laboratory genetic counselor with information about the common sample types analyzed by molecular techniques for the purposes of genetic testing and the various methodologies available and their limitations. Guidelines are given for the standard approach to molecular variant reporting with respect to nomenclature and variant classification.

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48

Divan, Aysha, and Janice A. Royds. 2. DNA. Oxford University Press, 2016. http://dx.doi.org/10.1093/actrade/9780198723882.003.0002.

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Another significant milestone was the publication in 2003 of the complete sequence of the human genome—the entire DNA contained within the forty-six chromosomes located in the nucleus of each human somatic (body) cell. Once this was published, further worldwide projects were launched to work out what the functions of these genes and other regions of the genome actually were. ‘DNA’ outlines the components of the human genome and their organization; DNA replication; mutations and correction mechanisms; polymorphisms; and new DNA technologies, including gene cloning, the polymerase chain reaction, and sequencing methods. Finally, bioinformatics and the subsequent issues of privacy and how this information could be used are discussed.

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49

Haiman, Christopher, and David J. Hunter. Genetic Epidemiology of Cancer. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780190676827.003.0004.

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This chapter explores the genetic epidemiology of cancer: the identification and quantification of inherited genetic factors, and their potential interaction with the environment, in the etiology of cancer in human populations. It also describes the techniques used to identify genetic variants that contribute to cancer susceptibility. It describes the older research methods for identifying the chromosomal localization of high-risk predisposing genes, such as linkage analysis within pedigrees and allele-sharing methods, as it is important to understand the foundations of the field. It also reviews the epidemiologic study designs that can be helpful in identifying low-risk alleles in candidate gene and genome-wide association studies, as well as gene–environment interactions. Finally, it describes some of the genotyping and sequencing platforms commonly employed for high-throughput genome analysis, and the concept of Mendelian randomization and how it may be useful in the study of biomarkers and environmental causes of cancer.

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50

Linton, Chris, and Susan Howell. Other yeasts. Edited by Christopher C. Kibbler, Richard Barton, Neil A. R. Gow, Susan Howell, Donna M. MacCallum, and Rohini J. Manuel. Oxford University Press, 2017. http://dx.doi.org/10.1093/med/9780198755388.003.0013.

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The yeasts described in this chapter are, in general, rare causes of serious human infection. Many are commonly found in the environment or as human commensals. The chapter provides a very brief summary of the following six yeast genera: Malassezia, Rhodotorula, Saccharomyces, Saprochaete, Sporobolomyces, and Trichosporon. Current taxonomy and significant species are also discussed although many fungal taxonomic groups are being re-evaluated in the light of DNA sequencing data, resulting in the renaming of some species and the regrouping of others. Pathogenicity, epidemiology, and clinical aspects are included, and treatment options are discussed. However, as infections caused by these yeasts are uncommon, there is sometimes a lack of supporting data. Culture and identification methods are also summarized, details of which will be presented in other chapters

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