Relevant bibliographies by topics / Single cell quantification

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  1. Journal articles
  2. Dissertations / Theses
  3. Book chapters
  4. Conference papers

Academic literature on the topic 'Single cell quantification'

Author: Grafiati
Published: 4 June 2021
Last updated: 2 February 2022

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Journal articles on the topic "Single cell quantification"

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Reiter, M., B. Kirchner, H. Muller, C. Holzhauer, W. Mann, and M. W. Pfaffl. "Quantification noise in single cell experiments." Nucleic Acids Research 39, no. 22 (2011): 9834. http://dx.doi.org/10.1093/nar/gkr1136.

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Reiter, M., B. Kirchner, H. Muller, C. Holzhauer, W. Mann, and M. W. Pfaffl. "Quantification noise in single cell experiments." Nucleic Acids Research 39, no. 18 (2011): e124-e124. http://dx.doi.org/10.1093/nar/gkr505.

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Jonasson, Emma, Lisa Andersson, Soheila Dolatabadi, Salim Ghannoum, Pierre Åman, and Anders Ståhlberg. "Total mRNA Quantification in Single Cells: Sarcoma Cell Heterogeneity." Cells 9, no. 3 (2020): 759. http://dx.doi.org/10.3390/cells9030759.

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Single-cell analysis enables detailed molecular characterization of cells in relation to cell type, genotype, cell state, temporal variations, and microenvironment. These studies often include the analysis of individual genes and networks of genes. The total amount of RNA also varies between cells due to important factors, such as cell type, cell size, and cell cycle state. However, there is a lack of simple and sensitive methods to quantify the total amount of RNA, especially mRNA. Here, we developed a method to quantify total mRNA levels in single cells based on global reverse transcription
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Loeffler, Dirk, and Timm Schroeder. "Understanding cell fate control by continuous single-cell quantification." Blood 133, no. 13 (2019): 1406–14. http://dx.doi.org/10.1182/blood-2018-09-835397.

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Abstract Cells and the molecular processes underlying their behavior are highly dynamic. Understanding these dynamic biological processes requires noninvasive continuous quantitative single-cell observations, instead of population-based average or single-cell snapshot analysis. Ideally, single-cell dynamics are measured long-term in vivo; however, despite progress in recent years, technical limitations still prevent such studies. On the other hand, in vitro studies have proven to be useful for answering long-standing questions. Although technically still demanding, long-term single-cell imagin
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Junkin, Michael, Alicia J. Kaestli, Zhang Cheng, et al. "High-Content Quantification of Single-Cell Immune Dynamics." Cell Reports 15, no. 2 (2016): 411–22. http://dx.doi.org/10.1016/j.celrep.2016.03.033.

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Ivask, Angela, Andrew J. Mitchell, Christopher M. Hope, Simon C. Barry, Enzo Lombi, and Nicolas H. Voelcker. "Single Cell Level Quantification of Nanoparticle–Cell Interactions Using Mass Cytometry." Analytical Chemistry 89, no. 16 (2017): 8228–32. http://dx.doi.org/10.1021/acs.analchem.7b01006.

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Xu, Liyi, Ilana L. Brito, Eric J. Alm, and Paul C. Blainey. "Virtual microfluidics for digital quantification and single-cell sequencing." Nature Methods 13, no. 9 (2016): 759–62. http://dx.doi.org/10.1038/nmeth.3955.

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Qiu, Xiaojie, Andrew Hill, Jonathan Packer, Dejun Lin, Yi-An Ma, and Cole Trapnell. "Single-cell mRNA quantification and differential analysis with Census." Nature Methods 14, no. 3 (2017): 309–15. http://dx.doi.org/10.1038/nmeth.4150.

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Schroeder, Timm. "Long-term single cell quantification: new tools for old questions." Experimental Hematology 43, no. 9 (2015): S32. http://dx.doi.org/10.1016/j.exphem.2015.06.025.

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Chen, Liang, and Sika Zheng. "BCseq: accurate single cell RNA-seq quantification with bias correction." Nucleic Acids Research 46, no. 14 (2018): e82-e82. http://dx.doi.org/10.1093/nar/gky308.

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Dissertations / Theses on the topic "Single cell quantification"

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Zheng, Yannan Ph D. Massachusetts Institute of Technology. "Quantification of microRNA regulation and its consequences at the single cell level." Thesis, Massachusetts Institute of Technology, 2015. http://hdl.handle.net/1721.1/99283.

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Thesis: Ph. D., Massachusetts Institute of Technology, Department of Physics, 2015.<br>Cataloged from PDF version of thesis.<br>Includes bibliographical references.<br>MicroRNAs (miRNAs) are a class of small non-coding RNAs which play important roles in post transcriptional gene regulation. miRNAs regulate more than half of mammalian protein-coding genes. They have been found to participate in almost every cellular process and their dysregulation is associated with many diseases. miRNAs recognize their targets by base paring to miRNA response elements (MREs), which are predominantly located at
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Stephan, Jürgen Verfasser], and Joachim [Akademischer Betreuer] [Rädler. "Cells on grids of nanostructures : From single cell distortion quantification to cell ensemble toxicity assays / Jürgen Stephan ; Betreuer: Joachim Rädler." München : Universitätsbibliothek der Ludwig-Maximilians-Universität, 2019. http://d-nb.info/1183572204/34.

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Stephan, Jürgen [Verfasser], and Joachim [Akademischer Betreuer] Rädler. "Cells on grids of nanostructures : From single cell distortion quantification to cell ensemble toxicity assays / Jürgen Stephan ; Betreuer: Joachim Rädler." München : Universitätsbibliothek der Ludwig-Maximilians-Universität, 2019. http://d-nb.info/1183572204/34.

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Fujita, Naotaka. "Noninvasive longitudinal quantification of β-cell mass with [111In]-labeled exendin-4". Doctoral thesis, Kyoto University, 2020. http://hdl.handle.net/2433/245834.

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京都大学<br>0048<br>新制・課程博士<br>博士(医学)<br>甲第22149号<br>医博第4540号<br>新制||医||1039(附属図書館)<br>京都大学大学院医学研究科医学専攻<br>(主査)教授 川口 義弥, 教授 上本 伸二, 教授 富樫 かおり<br>学位規則第4条第1項該当<br>Doctor of Medical Science<br>Kyoto University<br>DFAM
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Billman, Martin Rafael. "Quantification of HTLV-1 expression at the single-cell level in naturally-infected T-lymphocytes." Thesis, Imperial College London, 2017. http://hdl.handle.net/10044/1/59040.

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The human leukaemia virus HTLV-1 expresses essential accessory genes that manipulate the expression, splicing and transport of viral mRNAs. Two of these genes, tax and hbz, also promote proliferation of the infected cell, and both genes are thought to contribute to oncogenesis in adult T-cell leukaemia/lymphoma. The regulation of HTLV-1 proviral latency is not understood. tax, on the proviral plus strand, is usually silent in freshly-isolated cells, whereas the minus-strand-encoded hbz gene is persistently expressed at a low level. However, the persistently activated host immune response to Ta
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Steffen, Patrick [Verfasser], and Christian [Akademischer Betreuer] Wagner. "Quantification of red blood cell adhesion using holographic optical tweezers and single cell force spectroscopy / Patrick Steffen. Betreuer: Christian Wagner." Saarbrücken : Saarländische Universitäts- und Landesbibliothek, 2012. http://d-nb.info/1052551068/34.

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Rabl, Thomas. "Spontaneous Raman spectroscopy : exploring applicability in drug discovery and the medical sciences." Thesis, University of Dundee, 2018. https://discovery.dundee.ac.uk/en/studentTheses/dc910052-a06c-4cd2-b741-0feb254c6b9b.

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This thesis reports the investigation of spontaneous Raman Spectroscopy (RS) for its applicability in early drug discovery. A key focus has been to develop an understanding of the applicability of RS for the quantification and localisation of compound concentration inside mammalian cells. Further investigation into the use of Surface Enhanced Raman Spectroscopy (SERS) for research on Visceral Leishmaniasis (VL) and Leishmania donovani as well as investigating applicability for cancer research are decisive parts of this work. The key work described in this thesis is the investigation of whole c
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Schwarzfischer, Michael [Verfasser], Fabian J. [Akademischer Betreuer] Theis, and Hans-Werner [Akademischer Betreuer] Mewes. "Quantification and analysis of single-cell protein dynamics in stem cells using time-lapse microscopy / Michael Schwarzfischer. Gutachter: Fabian J. Theis ; Hans-Werner Mewes. Betreuer: Fabian J. Theis." München : Universitätsbibliothek der TU München, 2014. http://d-nb.info/1060482452/34.

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Soon, Chin Fhong. "Development of a novel cell traction force transducer based on cholesteryl ester liquid crystals : characterisation, quantification and evaluation of a cholesteryl ester liquid crystal based single cell force transducer system." Thesis, University of Bradford, 2011. http://hdl.handle.net/10454/5379.

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In biomechano-transducing, cellular generated tension can be measured by soft substrates based on polymers but these techniques are limited either by spatial resolution or ability to detect localised cell traction forces (CTF) due to their non-linear viscous behaviour under shear rates. A newly developed cell traction force transducer system based on cholesteryl ester lyotropic liquid crystals (LCTFT) was developed to sense localised traction forces of human keratinocyte cell lines (HaCaTs), in which the length of the deformation line induced represents the intensity of the CTF exerted. The ph
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Meyer, Thomas, Tom Venus, Holger Sieg, et al. "Simultaneous Quantification and Visualization of Titanium Dioxide Nanomaterial Uptake at the Single Cell Level in an In Vitro Model of the Human Small Intestine." Wiley, 2019. https://ul.qucosa.de/id/qucosa%3A70804.

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Useful properties render titanium dioxide nanomaterials (NMs) to be one of the most commonly used NMs worldwide. TiO2 powder is used as food additives (E171), which may contain up to 36% nanoparticles. Consequently, humans could be exposed to comparatively high amounts of NMs that may induce adverse effects of chronic exposure conditions. Visualization and quantification of cellular NM uptake as well as their interactions with biomolecules within cells are key issues regarding risk assessment. Advanced quantitative imaging tools for NM detection within biological environments are therefore req
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Book chapters on the topic "Single cell quantification"

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Karlin-Neumann, George, Bin Zhang, and Claudia Litterst. "Very Low Abundance Single-Cell Transcript Quantification with 5-Plex ddPCRTM Assays." In Methods in Molecular Biology. Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-7778-9_24.

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Koelsch, Kristi A. "Single-Cell High-Resolution Detection and Quantification of Protein Isoforms Differing by a Single Charge Unit." In Methods in Molecular Biology. Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-8793-1_44.

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Stamm, Petra, Soeren Strauss, Thomas D. Montenegro-Johnson, Richard Smith, and George W. Bassel. "In Silico Methods for Cell Annotation, Quantification of Gene Expression, and Cell Geometry at Single-Cell Resolution Using 3DCellAtlas." In Methods in Molecular Biology. Springer New York, 2016. http://dx.doi.org/10.1007/978-1-4939-6469-7_11.

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Liu, Yi-Ming, and Shulin Zhao. "Quantification of Amino Acids in a Single Cell by Microchip Electrophoresis with Chemiluminescence Detection." In Methods in Molecular Biology. Humana Press, 2011. http://dx.doi.org/10.1007/978-1-61779-445-2_28.

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Kubitschke, Hans, Erik W. Morawetz, Josef A. Käs, and Jörg Schnauß. "Physical Properties of Single Cells and Collective Behavior." In Quantification of Biophysical Parameters in Medical Imaging. Springer International Publishing, 2017. http://dx.doi.org/10.1007/978-3-319-65924-4_5.

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Biskup, Christoph, and Ignacio Rubio. "Real-Time Visualization and Quantification of Native Ras Activation in Single Living Cells." In Methods in Molecular Biology. Humana Press, 2013. http://dx.doi.org/10.1007/978-1-62703-791-4_19.

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Davidson, Reshma, Yajun Liu, Kenneth S. Gerien, and Jian-Qiu Wu. "Real-Time Visualization and Quantification of Contractile Ring Proteins in Single Living Cells." In Methods in Molecular Biology. Springer New York, 2016. http://dx.doi.org/10.1007/978-1-4939-3145-3_2.

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Köhne, S., K. Neumann, W. Dröge-Laser, and I. Broer. "Quantification of Heat Treatment-Induced Transgene Silencing Using Single Cells of Nicotiana tabacum." In Transgenic Organisms and Biosafety. Springer Berlin Heidelberg, 1996. http://dx.doi.org/10.1007/978-3-642-61460-6_23.

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Lu, Jing, and Andrew Tsourkas. "Quantification of miRNA Abundance in Single Cells Using Locked Nucleic Acid-FISH and Enzyme-Labeled Fluorescence." In Methods in Molecular Biology. Humana Press, 2010. http://dx.doi.org/10.1007/978-1-60761-901-7_5.

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Merugu, Swathi, Sahil Sharma, Justin Kaner, et al. "Chemical probes and methods for single-cell detection and quantification of epichaperomes in hematologic malignancies." In Chemical Tools for Imaging, Manipulating, and Tracking Biological Systems: Diverse Methods for Optical Imaging and Conjugation. Elsevier, 2020. http://dx.doi.org/10.1016/bs.mie.2020.04.057.

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Conference papers on the topic "Single cell quantification"

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Santamaria-Pang, Alberto, Raghav K. Padmanabhan, Anup Sood, et al. "Robust single cell quantification of immune cell subtypes in histological samples." In 2017 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI). IEEE, 2017. http://dx.doi.org/10.1109/bhi.2017.7897220.

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Kota, Divya, and Jing Liu. "Single cell genomic quantification by non-fluorescence nonlinear microscopy." In SPIE BiOS, edited by Jörg Enderlein, Ingo Gregor, Zygmunt K. Gryczynski, Rainer Erdmann, and Felix Koberling. SPIE, 2017. http://dx.doi.org/10.1117/12.2256502.

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Schroeder, Timm. "Abstract IA26: Long-term single cell quantification: New tools for old questions." In Abstracts: Fourth AACR International Conference on Frontiers in Basic Cancer Research; October 23-26, 2015; Philadelphia, PA. American Association for Cancer Research, 2016. http://dx.doi.org/10.1158/1538-7445.fbcr15-ia26.

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Moller, Birgit, and Katharina Burstenbinder. "Semi-Automatic Cell Segmentation from Noisy Image Data for Quantification of Microtubule Organization on Single Cell Level." In 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI). IEEE, 2019. http://dx.doi.org/10.1109/isbi.2019.8759145.

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Nedosekin, Dmitry A., Jacqueline Nolan, Alexandru S. Biris, and Vladimir P. Zharov. "Photoacoustic bio-quantification of graphene based nanomaterials at a single cell level (Conference Presentation)." In Photons Plus Ultrasound: Imaging and Sensing 2017, edited by Alexander A. Oraevsky and Lihong V. Wang. SPIE, 2017. http://dx.doi.org/10.1117/12.2254564.

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Shi, Jindou, Prabuddha Mukherjee, Aneesh Alex, et al. "Single-cell analysis pipeline for quantification of intracellular drug distribution by CARS/2PF/FLIM." In Three-Dimensional and Multidimensional Microscopy: Image Acquisition and Processing XXVIII, edited by Thomas G. Brown, Tony Wilson, and Laura Waller. SPIE, 2021. http://dx.doi.org/10.1117/12.2577041.

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Zhao, Yang, Deyong Chen, Yana Luo, et al. "A microfluidic device capable of continuous quantification of single-cell specific membrane capacitance and cytoplasm conductivity." In 2013 Transducers & Eurosensors XXVII: The 17th International Conference on Solid-State Sensors, Actuators and Microsystems (TRANSDUCERS & EUROSENSORS XXVII). IEEE, 2013. http://dx.doi.org/10.1109/transducers.2013.6626999.

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Nishimura, Satoshi. "Single cell fate visualization, evaluation, and quantification by high-speed XYZT 2P imaging in living animals." In Nonlinear Optics. OSA, 2015. http://dx.doi.org/10.1364/nlo.2015.nth3a.10.

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Lam, Gretchen, Eleen Shum, Christina Chang, et al. "Abstract 1419: Dissection of single-cell transcriptional and translational regulation by digital mRNA and protein quantification." In Proceedings: AACR Annual Meeting 2018; April 14-18, 2018; Chicago, IL. American Association for Cancer Research, 2018. http://dx.doi.org/10.1158/1538-7445.am2018-1419.

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Lui, Clarissa, Magnus Bergkvist, Carl Batt, and Thomas Sato. "Quantification of flagellar response of single-cell E. coli to chemotactic agents using microfabricated silicon nitride cantilevers." In 2008 IEEE Sensors. IEEE, 2008. http://dx.doi.org/10.1109/icsens.2008.4716721.

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