Academic literature on the topic 'Single nucleotide polymorphism array'

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Journal articles on the topic "Single nucleotide polymorphism array"

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Dutt, Amit, and Rameen Beroukhim. "Single nucleotide polymorphism array analysis of cancer." Current Opinion in Oncology 19, no. 1 (2007): 43–49. http://dx.doi.org/10.1097/cco.0b013e328011a8c1.

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Choi, Yong-Sung, Kyung-Sup Lee, and Dae-Hee Park. "Single nucleotide polymorphism (SNP) detection using microelectrode biochip array." Journal of Micromechanics and Microengineering 15, no. 10 (2005): 1938–46. http://dx.doi.org/10.1088/0960-1317/15/10/021.

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Spreiz, Ana, Roberta S. Guilherme, Claudio Castellan, et al. "Single-Nucleotide Polymorphism Array-Based Characterization of Ring Chromosome 18." Journal of Pediatrics 163, no. 4 (2013): 1174–78. http://dx.doi.org/10.1016/j.jpeds.2013.06.005.

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Gómez-Seguí, Inés, Dolors Sánchez-Izquierdo, Eva Barragán, et al. "Single-Nucleotide Polymorphism Array-Based Karyotyping of Acute Promyelocytic Leukemia." PLoS ONE 9, no. 6 (2014): e100245. http://dx.doi.org/10.1371/journal.pone.0100245.

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Zheng, Hai-Tao. "Loss of heterozygosity analyzed by single nucleotide polymorphism array in cancer." World Journal of Gastroenterology 11, no. 43 (2005): 6740. http://dx.doi.org/10.3748/wjg.v11.i43.6740.

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Jung, Yun Kyung, Jungkyu Kim, and Richard A. Mathies. "Microfluidic Linear Hydrogel Array for Multiplexed Single Nucleotide Polymorphism (SNP) Detection." Analytical Chemistry 87, no. 6 (2015): 3165–70. http://dx.doi.org/10.1021/ac5048696.

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Kagawa, Yasuo, Mami Hiraoka, Yukiko Miyashita-Hatano, et al. "Automated single nucleotide polymorphism typing using bead array in capillary tube." Journal of Bioscience and Bioengineering 110, no. 4 (2010): 505–8. http://dx.doi.org/10.1016/j.jbiosc.2010.05.007.

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Hiyama, E., H. Yamaoka, A. Kamimatsuse, et al. "Genomewide single nucleotide polymorphism microarray mapping for prediction of outcome of neuroblastoma patients." Journal of Clinical Oncology 24, no. 18_suppl (2006): 9010. http://dx.doi.org/10.1200/jco.2006.24.18_suppl.9010.

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9010 Background: Neuroblastoma is a biologically and genetically heterogeneous tumor and demonstrates favorable or unfavorable outcomes. However, the number of subgroups in neuroblastoma and natural history of each subgroup remain unclear. In Japan, nation-wide neuroblasotma mass-screening (MS) project had been performed on 6-month-old babies for 20 years that might have detected almost all neuroblastomas including regressing/ maturing tumors developed in this period. We surveyed more than 3,600 neuroblasotma cases including approximately 2,000 MS detecting cases. In this study, we examined ge
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Schwartz, Stuart. "Clinical Utility of Single Nucleotide Polymorphism Arrays." Clinics in Laboratory Medicine 31, no. 4 (2011): 581–94. http://dx.doi.org/10.1016/j.cll.2011.09.002.

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Creasey, Thomas, Amir Enshaei, Kathryn Watts, et al. "Single Nucleotide Polymorphism Array-Based Signature of Genetic Ploidy Groups in Acute Lymphoblastic Leukemia." Blood 134, Supplement_1 (2019): 1473. http://dx.doi.org/10.1182/blood-2019-122556.

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Acute lymphoblastic leukemia (ALL) is characterised by a number of recurrent chromosomal abnormalities which inform prognosis. Low hypodiploidy (HoTr) and high hyperdiploidy (HeH) are genetic subgroups associated with large non-random ploidy shifts, specifically 30-39 chromosomes and 51-65 chromosomes respectively. HoTr ALL often presents with a near triploid karyotype of 60-78 chromosomes through chromosomal endoreduplication without cytokinesis. This presents a diagnostic challenge in distinguishing this poor risk entity from good risk HeH ALL. To date, classification of such challenging cas
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Dissertations / Theses on the topic "Single nucleotide polymorphism array"

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Stanczak, Krzysztof M. "Detection of genomic deletions by single-nucleotide polymorphism array comparative genomic hybridization." Diss., Restricted to subscribing institutions, 2007. http://proquest.umi.com/pqdweb?did=1320950331&sid=1&Fmt=2&clientId=1564&RQT=309&VName=PQD.

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Silva, Fernanda Borges da. "Uso do Single Nucleotide Polymorphism Array (SNP-A) na investigação de alterações citogenéticas em pacientes com síndromes mielodisplásicas." Universidade de São Paulo, 2016. http://www.teses.usp.br/teses/disponiveis/17/17154/tde-29032017-164341/.

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As síndromes mielodisplásicas (SMD) constituem um grupo heterogêneo de doenças hematológicas de origem clonal, caracterizado por hematopoese ineficaz, citopenia e risco de evolução para leucemia mieloide aguda (LMA). As anormalidades citogenéticas adquiridas são marcadores prognósticos bem estabelecidos em SMD. No entanto, a técnica de citogenética metafásica apresenta limitações, incluindo baixa resolução e necessidade de divisão celular, sendo que defeitos cromossômicos podem não ser detectados. Tecnologias baseadas em microarranjo (array) de DNA, como o Single Nucleotide Polymorphism Array
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Ruppelt, Theresa. "Single nucleotide polymorphism array analysis in copy number variant detection: assessment of its feasibility in the diagnostic setting." Master's thesis, University of Cape Town, 2016. http://hdl.handle.net/11427/23720.

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Intellectual disability/developmental delay (ID/DD) is a significant problem in child health affecting 2 to 3% of the population worldwide. While the underlying aetiology of ID/DD in a large proportion (about 50%) of these patients is unknown, 15 to 20% of the internationally reported cases detected using microarray technologies are due to copy number variants (CNVs), whereas only 3 to 5% of ID/DD can be identified with conventional cytogenetics. The Affymetrix® Cytoscan™ High Density (HD) Array (Affymetrix, Santa Clara, CA) containing over 2.4 million markers for copy number (CN) was used to
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Quilez, Oliete Javier. "Application of genome-wide single-nucleotide polymorphism arrays to understanding dog disease and evolution." Doctoral thesis, Universitat Autònoma de Barcelona, 2012. http://hdl.handle.net/10803/98413.

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El descobriment d’un gran ventall de SNPs arrel dels projectes de seqüenciació de genomes, juntament amb les ràpides millores en el seu genotipatge a gran escala, van permetre el desenvolupament en moltes espècies animals de xips d’alta densitat de SNPs distribuïts pel genoma. Aquesta tesi presenta dos exemples de l’aplicació dels xips de SNPs per tal d’entendre malaltia i evolució en el gos, la història evolutiva del qual el converteix en un model animal apropiat per al mapatge de caràcters i en un fascinant cas de selecció artificial. En el primer exemple, motivats pel fet que només una ce
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Potluri, Keerti. "Improving DNA quality using FFPE tissues for Array Comparative Genomic Hybridization to find Single Nucleotide Polymorphisms (SNPs) in Melanoma." Wright State University / OhioLINK, 2015. http://rave.ohiolink.edu/etdc/view?acc_num=wright1438267267.

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Winchester, Laura. "Identification of candidate disease genes in common and rare disorders using copy number variant detection from single nucleotide polymorphism arrays." Thesis, University of Oxford, 2010. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.542993.

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Yu, Xuesong. "Statistical methods for analyzing genomic data with consideration of spatial structures /." Thesis, Connect to this title online; UW restricted, 2007. http://hdl.handle.net/1773/9553.

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Wong, Chi-wai. "High resolution mapping of loss of heterozygosity and chromosomal aberrations using oligonucleotide single nucleotide polymorphism genotyping arrays in colorectal adenoma to carcinoma progression." Click to view the E-thesis via HKUTO, 2006. http://sunzi.lib.hku.hk/hkuto/record/B3871923X.

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Ståhl, Patrik L. "Methods for Analyzing Genomes." Doctoral thesis, KTH, Genteknologi, 2010. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-12407.

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The human genome reference sequence has given us a two‐dimensional blueprint of our inherited code of life, but we need to employ modern‐day technology to expand our knowledge into a third dimension. Inter‐individual and intra‐individual variation has been shown to be larger than anticipated, and the mode of genetic regulation more complex. Therefore, the methods that were once used to explain our fundamental constitution are now used to decipher our differences. Over the past four years, throughput from DNA‐sequencing platforms has increased a thousand‐fold, bearing evidence of a rapid develo
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Norlén, Olov. "Small Intestinal Neuroendocrine Tumor : A Rare Malignancy with Favorable Outcome." Doctoral thesis, Uppsala universitet, Endokrinkirurgi, 2013. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-185071.

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Small intestinal neuroendocrine tumor (SI-NET) is the most common small bowel tumor in Europe and USA, with an annual incidence of around 0.3-1.3/100000 persons. SI-NETs are the most common type of gastroenteropancreatic NETs (GEP-NETs), and they are known for their ability to produce hormones such as tachykinins and serotonin, as well as for their favorable long-term prognosis in comparison to gastrointestinal adenocarcinoma. The overall aim of the thesis was to investigate unknown or unclear aspects of SI-NET disease, in connection with prognosis, treatment and follow-up. Paper I confirmed s
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Books on the topic "Single nucleotide polymorphism array"

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Single nucleotide polymorphisms: Methods and protocols. 2nd ed. Humana, 2009.

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Liu, Zhanjiang. Next generation sequencing and whole genome selection in aquaculture. Wiley-Blackwell, 2011.

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1956-, Kwok Pui-Yan, ed. Single nucleotide polymorphisms: Methods and protocols. Humana Press, 2003.

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Kwok, Pui-Yan. Single Nucleotide Polymorphisms: Methods and Protocols (Methods in Molecular Biology). Humana Press, 2002.

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Forensic DNA typing protocols. Humana Press, 2004.

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Carracedo, Angel. Forensic DNA Typing Protocols. Humana Press, 2004.

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(Editor), Graham R. Taylor, and Ian N. Day (Editor), eds. Guide to Mutation Detection. Wiley, 2005.

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1955-, Carracedo Ángel, ed. Forensic DNA typing protocols. Humana Press, 2005.

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Hamilton, Matthew Lloyd. COMT genotypes in pain responses. Edited by Paul Farquhar-Smith, Pierre Beaulieu, and Sian Jagger. Oxford University Press, 2018. http://dx.doi.org/10.1093/med/9780198834359.003.0080.

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The landmark study discussed in this chapter is ‘COMT val158met genotype affects μ‎-opioid neurotransmitter responses to a pain stressor’, published by Zubieta et al. in 2003. Catechol-O-methyl-transferase (COMT) is a key modulator of dopaminergic and noradrenergic neurotransmission. This study focused on a single nucleotide polymorphism of the COMT gene encoding the substitution of valine (val) by methionine (met) at Codon 158 (val158met), resulting in a three- to fourfold reduction in its activity. Individuals with the val/val genotype have the highest activity of COMT, val/met genotypes hav
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Morell-Ducos, Fausto. COMT and morphine use in cancer pain. Edited by Paul Farquhar-Smith, Pierre Beaulieu, and Sian Jagger. Oxford University Press, 2018. http://dx.doi.org/10.1093/med/9780198834359.003.0082.

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The landmark paper discussed in this chapter is ‘Genetic variation in the catechol-O-methyltransferase (COMT) gene and morphine requirements in cancer patients with pain’, published by Rakvåg et al. in 2008. Genetic variation contributes to differences in pain sensitivity and response to analgesics. Catecholamines are involved in the modulation of pain and are metabolized by catchol-O-methyltransferase (COMT). Genetic variability in the COMT gene may therefore contribute to differences in pain sensitivity and response to analgesics. It has been shown that a polymorphism in the COMT gene, Rs468
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Book chapters on the topic "Single nucleotide polymorphism array"

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Zhou, Xiaofeng, and David T. W. Wong. "Single Nucleotide Polymorphism Mapping Array Assay." In Comparative Genomics. Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-515-2_19.

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Wong, Kwong-Kwok. "Use of Single-Nucleotide Polymorphism Array for Tumor Aberrations in Gene Copy Numbers." In Genomics and Pharmacogenomics in Anticancer Drug Development and Clinical Response. Humana Press, 2008. http://dx.doi.org/10.1007/978-1-60327-088-5_6.

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Kangelaris, Gerald T., and Lawrence R. Lustig. "Single Nucleotide Polymorphism." In Encyclopedia of Otolaryngology, Head and Neck Surgery. Springer Berlin Heidelberg, 2013. http://dx.doi.org/10.1007/978-3-642-23499-6_200089.

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Morgan, Michael M., MacDonald J. Christie, Luis De Lecea, et al. "Single-Nucleotide Polymorphism." In Encyclopedia of Psychopharmacology. Springer Berlin Heidelberg, 2010. http://dx.doi.org/10.1007/978-3-540-68706-1_1520.

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Willsey, A. Jeremy. "Single-Nucleotide Polymorphism." In Encyclopedia of Autism Spectrum Disorders. Springer New York, 2013. http://dx.doi.org/10.1007/978-1-4419-1698-3_1985.

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Willsey, A. Jeremy, and Montana T. Morris. "Single-Nucleotide Polymorphism." In Encyclopedia of Autism Spectrum Disorders. Springer New York, 2020. http://dx.doi.org/10.1007/978-1-4614-6435-8_1985-3.

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Nahler, Gerhard. "single nucleotide polymorphism." In Dictionary of Pharmaceutical Medicine. Springer Vienna, 2009. http://dx.doi.org/10.1007/978-3-211-89836-9_1293.

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Willsey, A. Jeremy, and Montana T. Morris. "Single-Nucleotide Polymorphism." In Encyclopedia of Autism Spectrum Disorders. Springer International Publishing, 2021. http://dx.doi.org/10.1007/978-3-319-91280-6_1985.

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Edwards, David, John W. Forster, Noel O. I. Cogan, Jacqueline Batley, and David Chagné. "Single Nucleotide Polymorphism Discovery." In Association Mapping in Plants. Springer New York, 2007. http://dx.doi.org/10.1007/978-0-387-36011-9_4.

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Mathur, Runjhun, Bhisham Singh Rana, and Abhimanyu Kumar Jha. "Single Nucleotide Polymorphism (SNP)." In Encyclopedia of Animal Cognition and Behavior. Springer International Publishing, 2018. http://dx.doi.org/10.1007/978-3-319-47829-6_2049-1.

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Conference papers on the topic "Single nucleotide polymorphism array"

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Erickson, David, Xuezhu Liu, Roberto Venditti, Ulrich Krull, and Dongqing Li. "A DNA Hybridization Chip With Electrokinetically-Based Single Nucleotide Polymorphism (SNP) Discrimination." In ASME 2004 International Mechanical Engineering Congress and Exposition. ASMEDC, 2004. http://dx.doi.org/10.1115/imece2004-59320.

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Biosensors and more specifically biochips exploit the interactions between a target analyte and an immobilized biological recognition element to produce a measurable signal. Systems based on surface phase nucleic acid hybridization, such as modern microarrays, are particularly attractive due to the high degree of selectivity in the binding interactions. In this work an electrokinetically controlled poly(dimethylsiloxane) based DNA hybridization microfluidic chip is presented. The electrokinetic delivery technique provides the ability to dispense controlled sample sizes to the hybridization arr
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Zec, Helena C., Tushar D. Rane, Wen-Chy Chu, Vivian Wen Wang, and Tza-Huei Wang. "A microfluidic droplet platform for multiplexed single nucleotide polymorphism analysis of an array plant genomic DNA samples." In 2013 IEEE 26th International Conference on Micro Electro Mechanical Systems (MEMS). IEEE, 2013. http://dx.doi.org/10.1109/memsys.2013.6474228.

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Wang, Yuhang. "Cancer Classification Using Loss of Heterozygosity Data Derived from Single-Nucleotide Polymorphism Genotyping Arrays." In Conference Proceedings. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE, 2006. http://dx.doi.org/10.1109/iembs.2006.260116.

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Wang, Yuhang. "Cancer Classification Using Loss of Heterozygosity Data Derived from Single-Nucleotide Polymorphism Genotyping Arrays." In Conference Proceedings. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE, 2006. http://dx.doi.org/10.1109/iembs.2006.4398791.

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Tada, Motohisa, Fumihiko Kanai, Yoshinari Asaoka, et al. "Abstract 1184: Prognostic significance of genetic alterations detected by high-density single nucleotide polymorphism (SNP) array in gastrointestinal cancer." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-1184.

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Ninomiya, Hironori, Motohiro Kato, Kengo Takeuchi, et al. "Abstract 2154: Molecular allelo-karyotyping of pulmonary adenocarcinoma using high resolution single nucleotide polymorphism genomic arrays." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-2154.

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LeBron, Cynthia, Prodipto Pal, Mariana Brait, et al. "Abstract 4728: Genome-wide analysis of genetic alterations in seminoma using high resolution single Nucleotide polymorphism (SNP) arrays." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-4728.

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Ikeda, Yuji, Katsutoshi Oda, Shunsuke Nakagawa, et al. "Abstract 1702: A novel diagnostic approach using genome-wide single nucleotide polymorphism arrays for ovarian metastases in endometrial cancers." In Proceedings: AACR 103rd Annual Meeting 2012‐‐ Mar 31‐Apr 4, 2012; Chicago, IL. American Association for Cancer Research, 2012. http://dx.doi.org/10.1158/1538-7445.am2012-1702.

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Oda, Katsutoshi, Satsuki Murayama-Hosokawa, Shunsuke Nakagawa, et al. "Abstract 2152: Genome-wide single nucleotide polymorphism arrays in endometrial carcinomas associate extensive chromosomal instability with poor prognosis and unveil prevalent alterations in Ras/PI3-kinase pathway." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-2152.

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Chien, Wenwen, Norihiko Kawamata, Kazu Okemoto, Seishi Ogawa, and H. Phillip Koeffler. "Abstract 4994: Association of protein inhibitor of activated STAT protein 4 with the development of pancreatic ductal adenocarcinoma identified by chromosomal analysis from single nucleotide polymorphism arrays." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-4994.

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Reports on the topic "Single nucleotide polymorphism array"

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Beroukhim, Rameen. High-Resolution Mapping of Structural Mutations in Prostate Cancer With Single Nucleotide Polymorphism Arrays. Defense Technical Information Center, 2005. http://dx.doi.org/10.21236/ada446953.

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Beroukhim, Rameen. High-Resolution Mapping of Structural Mutations in Prostate Cancer with Single Nucleotide Polymorphism Arrays. Defense Technical Information Center, 2006. http://dx.doi.org/10.21236/ada463238.

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Langston, J. W. Large Scale Single Nucleotide Polymorphism Study of PD Susceptibility. Defense Technical Information Center, 2006. http://dx.doi.org/10.21236/ada458414.

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Wyatt, Colby A., and Constance E. Brinckerhoff. Effect of a Single Nucleotide Polymorphism (NP) on Breast Cancer Invasion. Defense Technical Information Center, 2001. http://dx.doi.org/10.21236/ada396663.

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Brinckerhoff, Constance E. Genetic Analysis of a Single Nucleotide Polymorphism in the Matrix Metalloproteinase 1 Promoter in Breast Cancer. Defense Technical Information Center, 2002. http://dx.doi.org/10.21236/ada407580.

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Brinckerhoff, Constqance B. Genetic Analysis of a Single Nucleotide Polymorphism in the Matrix Metalloproteinase 1 Promoter in Breast Cancer. Defense Technical Information Center, 2003. http://dx.doi.org/10.21236/ada419338.

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Pandya, Gagan A., Michael H. Holmes, Jeannine M. Petersen, et al. Whole-Genome Single Nucleotide Polymorphism Based Phylogeny of Francisella tularensis and Its Application to the Development of a Strain Typing Assay. Defense Technical Information Center, 2009. http://dx.doi.org/10.21236/ada513240.

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