Relevant bibliographies by topics / Single nucleotide polymorphism arrays

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  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers
  6. Reports

Academic literature on the topic 'Single nucleotide polymorphism arrays'

Author: Grafiati
Published: 7 September 2021
Last updated: 29 July 2025

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Journal articles on the topic "Single nucleotide polymorphism arrays"

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Schwartz, Stuart. "Clinical Utility of Single Nucleotide Polymorphism Arrays." Clinics in Laboratory Medicine 31, no. 4 (2011): 581–94. http://dx.doi.org/10.1016/j.cll.2011.09.002.

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Howard, Nicholas P., Michela Troggio, Charles-Eric Durel, et al. "Integration of Infinium and Axiom SNP array data in the outcrossing species Malus × domestica and causes for seemingly incompatible calls." BMC Genomics 22, no. 1 (2021): 246. https://doi.org/10.1186/s12864-021-07565-7.

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<strong>Background: </strong>Single nucleotide polymorphism (SNP) array technology has been increasingly used to generate large quantities of SNP data for use in genetic studies. As new arrays are developed to take advantage of new technology and of improved probe design using new genome sequence and panel data, a need to integrate data from different arrays and array platforms has arisen. This study was undertaken in view of our need for an integrated high-quality dataset of Illumina Infinium® 20 K and Affymetrix Axiom® 480 K SNP array data in apple (<i>Malus</i> × <i>domestica</i>). In this
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Bertok, Sara, Mojca Žerjav Tanšek, Primož Kotnik, et al. "Clinical and Molecular Cytogenetic Characterisation of Children with Developmental Delay and Dysmorphic Features / Klinična in Molekularna Citogenetska Obravnava Otrok Z Razvojnim Zaostankom in Displastičnimi Znaki." Slovenian Journal of Public Health 54, no. 2 (2015): 69–73. http://dx.doi.org/10.1515/sjph-2015-0010.

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Abstract Introduction. Developmental delay and dysmorphic features affect 1 - 3 % of paediatric population. In the last few years molecular cytogenetic high resolution techniques (comparative genomic hybridization arrays and single-nucleotide polymorphism arrays) have been proven to be a first-tier choice for clinical diagnostics of developmental delay and dysmorphic features. Methods and results. In the present article we describe the clinical advantages of molecular cytogenetic approach (comparative genomic hybridization arrays and single nucleotide polymorphism arrays) in the diagnostic pro
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Wang, Jun, Min Lin, Andrew Crenshaw, et al. "High-throughput single nucleotide polymorphism genotyping using nanofluidic Dynamic Arrays." BMC Genomics 10, no. 1 (2009): 561. http://dx.doi.org/10.1186/1471-2164-10-561.

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da Silva, Fernanda Borges, and Fabiola Traina. "Metaphase cytogenetics and single nucleotide polymorphism arrays in myeloid malignancies." Revista Brasileira de Hematologia e Hemoterapia 37, no. 2 (2015): 71–72. http://dx.doi.org/10.1016/j.bjhh.2015.01.007.

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Armstrong, Barbara, Michael Stewart, and Abhijit Mazumder. "Suspension arrays for high throughput, multiplexed single nucleotide polymorphism genotyping." Cytometry 40, no. 2 (2000): 102–8. http://dx.doi.org/10.1002/(sici)1097-0320(20000601)40:2<102::aid-cyto3>3.0.co;2-4.

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Sorby, K. L., E. C. Osborne, and T. Osianlis. "Preimplantation genetic screening using single nucleotide polymorphism arrays with parental support." Fertility and Sterility 100, no. 3 (2013): S201. http://dx.doi.org/10.1016/j.fertnstert.2013.07.1358.

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Midorikawa, Y., S. Yamamoto, S. Ishikawa, et al. "Molecular karyotyping of human hepatocellular carcinoma using single-nucleotide polymorphism arrays." Oncogene 25, no. 40 (2006): 5581–90. http://dx.doi.org/10.1038/sj.onc.1209537.

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Creasey, Thomas, Amir Enshaei, Kathryn Watts, et al. "Single Nucleotide Polymorphism Array-Based Signature of Genetic Ploidy Groups in Acute Lymphoblastic Leukemia." Blood 134, Supplement_1 (2019): 1473. http://dx.doi.org/10.1182/blood-2019-122556.

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Acute lymphoblastic leukemia (ALL) is characterised by a number of recurrent chromosomal abnormalities which inform prognosis. Low hypodiploidy (HoTr) and high hyperdiploidy (HeH) are genetic subgroups associated with large non-random ploidy shifts, specifically 30-39 chromosomes and 51-65 chromosomes respectively. HoTr ALL often presents with a near triploid karyotype of 60-78 chromosomes through chromosomal endoreduplication without cytokinesis. This presents a diagnostic challenge in distinguishing this poor risk entity from good risk HeH ALL. To date, classification of such challenging cas
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Dutt, Amit, and Rameen Beroukhim. "Single nucleotide polymorphism array analysis of cancer." Current Opinion in Oncology 19, no. 1 (2007): 43–49. http://dx.doi.org/10.1097/cco.0b013e328011a8c1.

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Dissertations / Theses on the topic "Single nucleotide polymorphism arrays"

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Quilez, Oliete Javier. "Application of genome-wide single-nucleotide polymorphism arrays to understanding dog disease and evolution." Doctoral thesis, Universitat Autònoma de Barcelona, 2012. http://hdl.handle.net/10803/98413.

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El descobriment d’un gran ventall de SNPs arrel dels projectes de seqüenciació de genomes, juntament amb les ràpides millores en el seu genotipatge a gran escala, van permetre el desenvolupament en moltes espècies animals de xips d’alta densitat de SNPs distribuïts pel genoma. Aquesta tesi presenta dos exemples de l’aplicació dels xips de SNPs per tal d’entendre malaltia i evolució en el gos, la història evolutiva del qual el converteix en un model animal apropiat per al mapatge de caràcters i en un fascinant cas de selecció artificial. En el primer exemple, motivats pel fet que només una ce
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Stanczak, Krzysztof M. "Detection of genomic deletions by single-nucleotide polymorphism array comparative genomic hybridization." Diss., Restricted to subscribing institutions, 2007. http://proquest.umi.com/pqdweb?did=1320950331&sid=1&Fmt=2&clientId=1564&RQT=309&VName=PQD.

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Winchester, Laura. "Identification of candidate disease genes in common and rare disorders using copy number variant detection from single nucleotide polymorphism arrays." Thesis, University of Oxford, 2010. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.542993.

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Wong, Chi-wai. "High resolution mapping of loss of heterozygosity and chromosomal aberrations using oligonucleotide single nucleotide polymorphism genotyping arrays in colorectal adenoma to carcinoma progression." Click to view the E-thesis via HKUTO, 2006. http://sunzi.lib.hku.hk/hkuto/record/B3871923X.

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Silva, Fernanda Borges da. "Uso do Single Nucleotide Polymorphism Array (SNP-A) na investigação de alterações citogenéticas em pacientes com síndromes mielodisplásicas." Universidade de São Paulo, 2016. http://www.teses.usp.br/teses/disponiveis/17/17154/tde-29032017-164341/.

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As síndromes mielodisplásicas (SMD) constituem um grupo heterogêneo de doenças hematológicas de origem clonal, caracterizado por hematopoese ineficaz, citopenia e risco de evolução para leucemia mieloide aguda (LMA). As anormalidades citogenéticas adquiridas são marcadores prognósticos bem estabelecidos em SMD. No entanto, a técnica de citogenética metafásica apresenta limitações, incluindo baixa resolução e necessidade de divisão celular, sendo que defeitos cromossômicos podem não ser detectados. Tecnologias baseadas em microarranjo (array) de DNA, como o Single Nucleotide Polymorphism Array
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Ruppelt, Theresa. "Single nucleotide polymorphism array analysis in copy number variant detection: assessment of its feasibility in the diagnostic setting." Master's thesis, University of Cape Town, 2016. http://hdl.handle.net/11427/23720.

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Intellectual disability/developmental delay (ID/DD) is a significant problem in child health affecting 2 to 3% of the population worldwide. While the underlying aetiology of ID/DD in a large proportion (about 50%) of these patients is unknown, 15 to 20% of the internationally reported cases detected using microarray technologies are due to copy number variants (CNVs), whereas only 3 to 5% of ID/DD can be identified with conventional cytogenetics. The Affymetrix® Cytoscan™ High Density (HD) Array (Affymetrix, Santa Clara, CA) containing over 2.4 million markers for copy number (CN) was used to
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Yu, Xuesong. "Statistical methods for analyzing genomic data with consideration of spatial structures /." Thesis, Connect to this title online; UW restricted, 2007. http://hdl.handle.net/1773/9553.

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Ståhl, Patrik L. "Methods for Analyzing Genomes." Doctoral thesis, KTH, Genteknologi, 2010. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-12407.

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The human genome reference sequence has given us a two‐dimensional blueprint of our inherited code of life, but we need to employ modern‐day technology to expand our knowledge into a third dimension. Inter‐individual and intra‐individual variation has been shown to be larger than anticipated, and the mode of genetic regulation more complex. Therefore, the methods that were once used to explain our fundamental constitution are now used to decipher our differences. Over the past four years, throughput from DNA‐sequencing platforms has increased a thousand‐fold, bearing evidence of a rapid develo
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Norlén, Olov. "Small Intestinal Neuroendocrine Tumor : A Rare Malignancy with Favorable Outcome." Doctoral thesis, Uppsala universitet, Endokrinkirurgi, 2013. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-185071.

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Small intestinal neuroendocrine tumor (SI-NET) is the most common small bowel tumor in Europe and USA, with an annual incidence of around 0.3-1.3/100000 persons. SI-NETs are the most common type of gastroenteropancreatic NETs (GEP-NETs), and they are known for their ability to produce hormones such as tachykinins and serotonin, as well as for their favorable long-term prognosis in comparison to gastrointestinal adenocarcinoma. The overall aim of the thesis was to investigate unknown or unclear aspects of SI-NET disease, in connection with prognosis, treatment and follow-up. Paper I confirmed s
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Hultin, Emilie. "Genetic Sequence Analysis by Microarray Technology." Doctoral thesis, Stockholm : School of Biotechnology, Royal Institute of Technology, 2007. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-4330.

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Books on the topic "Single nucleotide polymorphism arrays"

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1956-, Kwok Pui-Yan, ed. Single nucleotide polymorphisms: Methods and protocols. Humana Press, 2003.

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Liu, Zhanjiang. Next generation sequencing and whole genome selection in aquaculture. Wiley-Blackwell, 2011.

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1955-, Carracedo Ángel, ed. Forensic DNA typing protocols. Humana Press, 2005.

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Komar, Anton A. Single Nucleotide Polymorphisms: Methods and Protocols. Humana Press, 2012.

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Kwok, Pui-Yan. Single Nucleotide Polymorphisms: Methods and Protocols (Methods in Molecular Biology). Humana Press, 2002.

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Osman, Marwa. In Silico Analysis and Modeling of Deleterious Single Nucleotide Polymorphism (Snps) in Human Gata4 Gene. GRIN Verlag GmbH, 2016.

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Carracedo, Angel. Forensic DNA Typing Protocols. Humana Press, 2004.

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Forensic DNA typing protocols. Humana Press, 2004.

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A Primer of Genome Science. Sinauer Associates, 2001.

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(Editor), Graham R. Taylor, and Ian N. Day (Editor), eds. Guide to Mutation Detection. Wiley, 2005.

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Book chapters on the topic "Single nucleotide polymorphism arrays"

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Zhou, Xiaofeng, and David T. W. Wong. "Single Nucleotide Polymorphism Mapping Array Assay." In Comparative Genomics. Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-515-2_19.

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Lovmar, Lovisa, and Ann-Christine Syvänen. "Genotyping Single-Nucleotide Polymorphisms by Minisequencing Using Tag Arrays." In Microarrays in Clinical Diagnostics. Humana Press, 2005. http://dx.doi.org/10.1385/1-59259-923-0:79.

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Milani, Lili, and Ann-Christine Syvänen. "Genotyping Single Nucleotide Polymorphisms by Multiplex Minisequencing Using Tag-Arrays." In Methods in Molecular Biology. Humana Press, 2009. http://dx.doi.org/10.1007/978-1-59745-538-1_14.

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Wong, Kwong-Kwok. "Use of Single-Nucleotide Polymorphism Array for Tumor Aberrations in Gene Copy Numbers." In Genomics and Pharmacogenomics in Anticancer Drug Development and Clinical Response. Humana Press, 2008. http://dx.doi.org/10.1007/978-1-60327-088-5_6.

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Nahler, Gerhard. "single nucleotide polymorphism." In Dictionary of Pharmaceutical Medicine. Springer Vienna, 2009. http://dx.doi.org/10.1007/978-3-211-89836-9_1293.

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Morgan, Michael M., MacDonald J. Christie, Luis De Lecea, et al. "Single-Nucleotide Polymorphism." In Encyclopedia of Psychopharmacology. Springer Berlin Heidelberg, 2010. http://dx.doi.org/10.1007/978-3-540-68706-1_1520.

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Willsey, A. Jeremy, and Montana T. Morris. "Single-Nucleotide Polymorphism." In Encyclopedia of Autism Spectrum Disorders. Springer New York, 2020. http://dx.doi.org/10.1007/978-1-4614-6435-8_1985-3.

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Willsey, A. Jeremy. "Single-Nucleotide Polymorphism." In Encyclopedia of Autism Spectrum Disorders. Springer New York, 2013. http://dx.doi.org/10.1007/978-1-4419-1698-3_1985.

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Kangelaris, Gerald T., and Lawrence R. Lustig. "Single Nucleotide Polymorphism." In Encyclopedia of Otolaryngology, Head and Neck Surgery. Springer Berlin Heidelberg, 2013. http://dx.doi.org/10.1007/978-3-642-23499-6_200089.

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Gang, Anubha, and Vivek Kumar Shrivastav. "Single-Nucleotide Polymorphism." In Handbook of DNA Profiling. Springer Singapore, 2021. http://dx.doi.org/10.1007/978-981-15-9364-2_8-1.

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Conference papers on the topic "Single nucleotide polymorphism arrays"

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Wang, Yuhang. "Cancer Classification Using Loss of Heterozygosity Data Derived from Single-Nucleotide Polymorphism Genotyping Arrays." In Conference Proceedings. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE, 2006. http://dx.doi.org/10.1109/iembs.2006.260116.

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Wang, Yuhang. "Cancer Classification Using Loss of Heterozygosity Data Derived from Single-Nucleotide Polymorphism Genotyping Arrays." In Conference Proceedings. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE, 2006. http://dx.doi.org/10.1109/iembs.2006.4398791.

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Ninomiya, Hironori, Motohiro Kato, Kengo Takeuchi, et al. "Abstract 2154: Molecular allelo-karyotyping of pulmonary adenocarcinoma using high resolution single nucleotide polymorphism genomic arrays." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-2154.

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Erickson, David, Xuezhu Liu, Roberto Venditti, Ulrich Krull, and Dongqing Li. "A DNA Hybridization Chip With Electrokinetically-Based Single Nucleotide Polymorphism (SNP) Discrimination." In ASME 2004 International Mechanical Engineering Congress and Exposition. ASMEDC, 2004. http://dx.doi.org/10.1115/imece2004-59320.

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Biosensors and more specifically biochips exploit the interactions between a target analyte and an immobilized biological recognition element to produce a measurable signal. Systems based on surface phase nucleic acid hybridization, such as modern microarrays, are particularly attractive due to the high degree of selectivity in the binding interactions. In this work an electrokinetically controlled poly(dimethylsiloxane) based DNA hybridization microfluidic chip is presented. The electrokinetic delivery technique provides the ability to dispense controlled sample sizes to the hybridization arr
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LeBron, Cynthia, Prodipto Pal, Mariana Brait, et al. "Abstract 4728: Genome-wide analysis of genetic alterations in seminoma using high resolution single Nucleotide polymorphism (SNP) arrays." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-4728.

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Ikeda, Yuji, Katsutoshi Oda, Shunsuke Nakagawa, et al. "Abstract 1702: A novel diagnostic approach using genome-wide single nucleotide polymorphism arrays for ovarian metastases in endometrial cancers." In Proceedings: AACR 103rd Annual Meeting 2012‐‐ Mar 31‐Apr 4, 2012; Chicago, IL. American Association for Cancer Research, 2012. http://dx.doi.org/10.1158/1538-7445.am2012-1702.

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Zec, Helena C., Tushar D. Rane, Wen-Chy Chu, Vivian Wen Wang, and Tza-Huei Wang. "A microfluidic droplet platform for multiplexed single nucleotide polymorphism analysis of an array plant genomic DNA samples." In 2013 IEEE 26th International Conference on Micro Electro Mechanical Systems (MEMS). IEEE, 2013. http://dx.doi.org/10.1109/memsys.2013.6474228.

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Tada, Motohisa, Fumihiko Kanai, Yoshinari Asaoka, et al. "Abstract 1184: Prognostic significance of genetic alterations detected by high-density single nucleotide polymorphism (SNP) array in gastrointestinal cancer." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-1184.

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Oda, Katsutoshi, Satsuki Murayama-Hosokawa, Shunsuke Nakagawa, et al. "Abstract 2152: Genome-wide single nucleotide polymorphism arrays in endometrial carcinomas associate extensive chromosomal instability with poor prognosis and unveil prevalent alterations in Ras/PI3-kinase pathway." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-2152.

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Chien, Wenwen, Norihiko Kawamata, Kazu Okemoto, Seishi Ogawa, and H. Phillip Koeffler. "Abstract 4994: Association of protein inhibitor of activated STAT protein 4 with the development of pancreatic ductal adenocarcinoma identified by chromosomal analysis from single nucleotide polymorphism arrays." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-4994.

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Reports on the topic "Single nucleotide polymorphism arrays"

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Beroukhim, Rameen. High-Resolution Mapping of Structural Mutations in Prostate Cancer With Single Nucleotide Polymorphism Arrays. Defense Technical Information Center, 2005. http://dx.doi.org/10.21236/ada446953.

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Beroukhim, Rameen. High-Resolution Mapping of Structural Mutations in Prostate Cancer with Single Nucleotide Polymorphism Arrays. Defense Technical Information Center, 2006. http://dx.doi.org/10.21236/ada463238.

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Langston, J. W. Large Scale Single Nucleotide Polymorphism Study of PD Susceptibility. Defense Technical Information Center, 2006. http://dx.doi.org/10.21236/ada458414.

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Wyatt, Colby A., and Constance E. Brinckerhoff. Effect of a Single Nucleotide Polymorphism (NP) on Breast Cancer Invasion. Defense Technical Information Center, 2001. http://dx.doi.org/10.21236/ada396663.

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Brinckerhoff, Constance E. Genetic Analysis of a Single Nucleotide Polymorphism in the Matrix Metalloproteinase 1 Promoter in Breast Cancer. Defense Technical Information Center, 2002. http://dx.doi.org/10.21236/ada407580.

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Brinckerhoff, Constqance B. Genetic Analysis of a Single Nucleotide Polymorphism in the Matrix Metalloproteinase 1 Promoter in Breast Cancer. Defense Technical Information Center, 2003. http://dx.doi.org/10.21236/ada419338.

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Sherman, Amir, Rebecca Grumet, Ron Ophir, Nurit Katzir, and Yiqun Weng. Whole genome approach for genetic analysis in cucumber: Fruit size as a test case. United States Department of Agriculture, 2013. http://dx.doi.org/10.32747/2013.7594399.bard.

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The Cucurbitaceae family includes a broad array of economically and nutritionally important crop species that are consumed as vegetables, staple starches and desserts. Fruit of these species, and types within species, exhibit extensive diversity as evidenced by variation in size, shape, color, flavor, and others. Fruit size and shape are critical quality determinants that delineate uses and market classes and are key traits under selection in breeding programs. However, the underlying genetic bases for variation in fruit size remain to be determined. A few species the Cucurbitaceae family were
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Cahaner, Avigdor, Sacit F. Bilgili, Orna Halevy, Roger J. Lien, and Kellye S. Joiner. effects of enhanced hypertrophy, reduced oxygen supply and heat load on breast meat yield and quality in broilers. United States Department of Agriculture, 2014. http://dx.doi.org/10.32747/2014.7699855.bard.

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Original objectivesThe objectives of this project were to evaluate the growth performance, meat yield and quality attributes of broiler strains widely differing in their genetic potential under normal temperature vs. warm temperature (short and long-term) conditions. Strain differences in breast muscle accretion rate, metabolic responses under heat load and, gross and histopathological changes in breast muscle under thermal load was also to be characterized. BackgroundTremendous genetic progress has been made in broiler chicken growth rate and meat yield since the 1950s. Higher growth rate is
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Pandya, Gagan A., Michael H. Holmes, Jeannine M. Petersen, et al. Whole-Genome Single Nucleotide Polymorphism Based Phylogeny of Francisella tularensis and Its Application to the Development of a Strain Typing Assay. Defense Technical Information Center, 2009. http://dx.doi.org/10.21236/ada513240.

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ZHOU, YUHUI, XIAOXIA MA, and JINGLAN SUN. Update on the Relationship Between the SLC4A7 variant rs4973768 and Breast Cancer risk: a systematic review and meta-analysis. INPLASY - International Platform of Registered Systematic Review and Meta-analysis Protocols, 2023. http://dx.doi.org/10.37766/inplasy2023.2.0013.

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Review question / Objective: The aim of this meta-analysis was to get an updated opinion, which was about the role of the single nucleotide polymorphism (SNP) rs4973768 in the SLC4A7 gene played in the incident of breast cancer. Eligibility criteria: The included criteria were formulated for this meta-analysis as following:(1) studies with both case and control groups;(2) studies assessing the relation between the SLC4A7 rs4973768 polymorphism and sensibility to breast cancer;(3) studies with sufficient information such as genotype frequency for results of odds ratios (ORs) and 95% confidence
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