Relevant bibliographies by topics / Small subunit (SSU) 18S rDNA

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Academic literature on the topic 'Small subunit (SSU) 18S rDNA'

Author: Grafiati
Published: 3 June 2025
Last updated: 1 August 2025

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Journal articles on the topic "Small subunit (SSU) 18S rDNA"

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SONG, JING-YI, QING TIAN, and JIAN‑KUI LIU. "Pseudorobillarda sichuanensis sp. nov. associated with Bambusa sp. from Sichuan province, China." Phytotaxa 561, no. 3 (2022): 256–66. http://dx.doi.org/10.11646/phytotaxa.561.3.3.

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During an investigation of ascomycetous fungi on bamboos in Sichuan province, China, a new coelomycetous species, Pseudorobillarda sichuanensis was found on dead culms of Bambusa sp. and described. The new taxon differs from other Pseudorobillarda species in having paraphyses, subcylindrical conidiogenous cells, subcylindrical to naviculate, aseptate, guttulate conidia with 3-4 apical appendages. Phylogenetic analyses of a combined internal transcribed spacer (ITS), the partial 28S large subunit rDNA (LSU), the partial 18S small subunit rDNA(SSU) and the partial DNA-directed RNA polymerase II
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ZAREI, SHEYDA, and SEDIGHE AZIMI. "FIRST MOLECULAR CHARACTERIZATION OF DITYLENCHUS FILIMUS ANDERSON, 1983 (NEMATODA ANGUINIDAE) BASED ON THE POPULATION FROM IRAN." Redia 106 (October 23, 2023): 97–105. http://dx.doi.org/10.19263/redia-106.23.11.

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During a survey on the biodiversity of plant-parasitic nematodes in Khuzestan province (southwest Iran), Ditylenchus filimus was discovered in the rhizosphere of date palm. The morphological and morphometric data were provided for the recovered species. The morphological characters of Iranian population are in agreement with the type population and other populations of this species. Molecular phylogenetic analyses of the species with representatives of the family Anguinidae were discussed using partial sequences of the small subunit, D2-D3 expansion segments of the large subunit, and internal
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Eamsobhana, P., P. E. Lim, and H. S. Yong. "Phylogenetics and systematics of Angiostrongylus lungworms and related taxa (Nematoda: Metastrongyloidea) inferred from the nuclear small subunit (SSU) ribosomal DNA sequences." Journal of Helminthology 89, no. 3 (2014): 317–25. http://dx.doi.org/10.1017/s0022149x14000108.

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AbstractThe Angiostrongylus lungworms are of public health and veterinary concern in many countries. At the family level, the Angiostrongylus lungworms have been included in the family Angiostrongylidae or the family Metastrongylidae. The present study was undertaken to determine the usefulness and suitability of the nuclear 18S (small subunit, SSU) rDNA sequences for differentiating various taxa of the genus Angiostrongylus, as well as to determine the systematics and phylogenetic relationship of Angiostrongylus species and other metastrongyloid taxa. This study revealed six 18S (SSU) haploty
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JENKINS, M. C., J. T. ELLIS, S. LIDDELL, et al. "The relationship of Hammondia hammondi and Sarcocystis mucosa to other heteroxenous cyst-forming coccidia as inferred by phylogenetic analysis of the 18S SSU ribosomal DNA sequence." Parasitology 119, no. 2 (1999): 135–42. http://dx.doi.org/10.1017/s0031182099004618.

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The complete sequence of the 18S small subunit (SSU) ribosomal DNA of Hammondia hammondi and Sarcocystis mucosa was obtained and compared to SSU rDNA sequences of Neospora caninum, Toxoplasma gondii, Besnoitia besnoiti, 2 species of Frenkelia, 3 species of Isospora, and 13 species of Sarcocystis. Analyses showed that H. hammondi and T. gondii are monophyletic and that these taxa shared a common ancestor with N. caninum and B. besnoiti. The weight of evidence shows that S. mucosa, S. neurona, and Frenkelia species form a clade thereby supporting the conclusion that Sarcocystis is paraphyletic.
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GAO, HANXING, JINGYAN YIN, YU LI, SHUYAN LIU, and ZHAOXIANG ZHU. "Introducing Querciphoma styphnolobii sp. nov., the first sexual morph of Querciphoma (Leptosphaeriaceae, Pleosporales)." Phytotaxa 555, no. 4 (2022): 279–90. http://dx.doi.org/10.11646/phytotaxa.555.4.1.

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Using combined morphological characteristics and molecular phylogeny, a new species Querciphoma styphnolobii sp. nov. (Dothideomycetes, Pleosporales) from China is described and illustrated. The new species is distinguished by dark green to black colony, eustromatic conidiomata, smooth, hyaline, cylindrical conidia with one middle constricted, septate and muriform ascospores. Phylogenetic analyses using multilocus sequence data of internal transcribed spacers (ITS), large subunit 28S rDNA (LSU), small subunit 18S rDNA (SSU), and translation elongation factor 1-alpha (TEF1-α) regions revealed t
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Du, Hong-Zhi, Yu-Hang Lu, Ratchadawan Cheewangkoon, and Jian-Kui Liu. "Morpho-phylogenetic evidence reveals novel species and new records of Nigrograna (Nigrogranaceae) associated with medicinal plants in Southwestern China." MycoKeys 110 (October 23, 2024): 1–33. http://dx.doi.org/10.3897/mycokeys.110.132628.

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During a survey of saprobic fungal niches in Southwestern China, eighteen ascomycetous collections of Nigrograna (Nigrogranaceae, Pleosporales, Dothideomycetes) were found on dead branches of medicinal plants. These taxa were characterized and identified based on morphological and culture characteristics, and phylogenetic analyses of a combined the internal transcribed spacer region of rDNA (ITS), nuclear large subunit rDNA (28S, LSU), RNA polymerase second-largest subunit (rpb2), nuclear small subunit rDNA (18S, SSU), and translation elongation factor 1-alpha (tef1-α) sequence dataset also co
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Herr, Roger A., Libero Ajello, John W. Taylor, Sarath N. Arseculeratne, and Leonel Mendoza. "Phylogenetic Analysis of Rhinosporidium seeberi’s 18S Small-Subunit Ribosomal DNA Groups This Pathogen among Members of the Protoctistan Mesomycetozoa Clade." Journal of Clinical Microbiology 37, no. 9 (1999): 2750–54. http://dx.doi.org/10.1128/jcm.37.9.2750-2754.1999.

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For the past 100 years the phylogenetic affinities ofRhinosporidium seeberi have been controversial. Based on its morphological features, it has been classified as a protozoan or as a member of the kingdom Fungi. We have amplified and sequenced nearly a full-length 18S small-subunit (SSU) ribosomal DNA (rDNA) sequence fromR. seeberi. Using phylogenetic analysis, by parsimony and distance methods, of R. seeberi’s 18S SSU rDNA and that of other eukaryotes, we found that this enigmatic pathogen of humans and animals clusters with a novel group of fish parasites referred to as the DRIP clade (Derm
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SATO, H., A. OSANAI, H. KAMIYA, et al. "Characterization of SSU and LSU rRNA genes of threeTrypanosoma (Herpetosoma) grosiisolates maintained in Mongolian jirds." Parasitology 130, no. 2 (2004): 157–67. http://dx.doi.org/10.1017/s0031182004006493.

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Trypanosoma (Herpetosoma) grosi, which naturally parasitizesApodemusspp., can experimentally infect Mongolian jirds (Meriones unguiculatus). Three isolates fromA. agrarius,A. peninsulae, andA. speciosus(named SESUJI, HANTO, and AKHA isolates, respectively) of different geographical origin (AKHA from Japan, and the others from Vladivostok), exhibited different durations of parasitaemia in laboratory jirds (2 weeks for HANTO, and 3 weeks for the others). To assess the genetic background of theseT. grosiisolates, their small (SSU) and large subunit (LSU) ribosomal RNA genes (rDNA) were sequenced
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Du, Hong-Zhi, Yu-Hang Lu, Ratchadawan Cheewangkoon, and Jian-Kui Liu. "Morpho-phylogenetic evidence reveals novel species and new records of Nigrograna (Nigrogranaceae) associated with medicinal plants in Southwestern China." MycoKeys 110 (October 23, 2024): 1–33. https://doi.org/10.3897/mycokeys.110.132628.

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During a survey of saprobic fungal niches in Southwestern China, eighteen ascomycetous collections of <i>Nigrograna</i> (Nigrogranaceae, Pleosporales, Dothideomycetes) were found on dead branches of medicinal plants. These taxa were characterized and identified based on morphological and culture characteristics, and phylogenetic analyses of a combined the internal transcribed spacer region of rDNA (ITS), nuclear large subunit rDNA (28S, LSU), RNA polymerase second-largest subunit (<i>rpb2</i>), nuclear small subunit rDNA (18S, SSU), and translation elongation factor 1-alpha (<i>tef1-α</i>) seq
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Peters, Sabine, Stefanie Koschinsky, Frank Schwieger, and Christoph C. Tebbe. "Succession of Microbial Communities during Hot Composting as Detected by PCR–Single-Strand-Conformation Polymorphism-Based Genetic Profiles of Small-Subunit rRNA Genes." Applied and Environmental Microbiology 66, no. 3 (2000): 930–36. http://dx.doi.org/10.1128/aem.66.3.930-936.2000.

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ABSTRACT A cultivation-independent technique for genetic profiling of PCR-amplified small-subunit rRNA genes (SSU rDNA) was chosen to characterize the diversity and succession of microbial communities during composting of an organic agricultural substrate. PCR amplifications were performed with DNA directly extracted from compost samples and with primers targeting either (i) the V4–V5 region of eubacterial 16S rRNA genes, (ii) the V3 region in the 16S rRNA genes of actinomycetes, or (iii) the V8–V9 region of fungal 18S rRNA genes. Homologous PCR products were converted to single-stranded DNA m
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Book chapters on the topic "Small subunit (SSU) 18S rDNA"

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"Whirling Disease: Reviews and Current Topics." In Whirling Disease: Reviews and Current Topics, edited by RONALD P. HEDRICK and MANSOUR EL-MATBOULI. American Fisheries Society, 2002. http://dx.doi.org/10.47886/9781888569377.ch4.

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&lt;em&gt;ABSTRACT. Myxobolus cerebralis &lt;/em&gt;possesses unique phenotypic and genotypic characteristics when compared with other histozoic parasites from the phylum Myxozoa. The parasite infects the cartilage and thereby induces a serious and potentially lethal disease in salmonid fish. Comparisons of the small subunit ribosomal DNA (ssu rDNA) sequences of &lt;em&gt;M. cerebralis &lt;/em&gt;to other myxozoans demonstrate that the parasite has evolved separately from other &lt;em&gt;Myxobolus &lt;/em&gt;spp. that may appear in cartilage or nervous tissues of the fish host. &lt;em&gt;Myxob
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Reports on the topic "Small subunit (SSU) 18S rDNA"

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นุชประยูร, สุรางค์, та วิวรพรรณ สรรประเสริฐ. การตรวจหายีนดื้อยา metronidazole ของเชื้อ Blastocystis hominis : รายงานการวิจัยฉบับสมบูรณ์. จุฬาลงกรณ์มหาวิทยาลัย, 2015. https://doi.org/10.58837/chula.res.2015.29.

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Blastocystis sp. เป็นโปรโตซัวในลำไส้ของมนุษย์และสัตว์ที่พบได้ทั่วโลก การติดเชื้ออาจทำให้เกิดอาการทางระบบทางเดินอาหารที่หลากหลาย ผู้ติดเชื้อส่วนมากไม่ปรากฎอาการของโรค จากการที่โปรโตซัวชนิดนี้ไม่ก่อให้เกิดอาการร้ายแรงในผู้ติดเชื้อ ทำให้เป็นที่ละเลยของผู้ติดเชื้อในการรับการรักษาที่ถูกต้อง ซึ่งสอดคล้องกับได้มีรายงานการตรวจพบผู้ติดเชื้อ Blastocystis sp. มากขึ้นเรื่อยๆ ในปัจจุบันนี้ จึงอาจมีความเป็นไปได้ว่ามีแพร่กระจายของเชื้อ Blastocystis sp. ออกไปอย่างรวดเร็ว การศึกษานี้จึงมีวัตถุประสงค์เพื่อศึกษาหายีนดื้อยาของเชื้อเพื่อศึกษาการระบาดของเชื้อที่ดื้อยาในประเทศไทยต่อไป โดยได้ทำการสำรวจสุ่มเก็บอุจจาระ
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