Relevant bibliographies by topics / SNP array

Contents

  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers
  6. Reports

Academic literature on the topic 'SNP array'

Author: Grafiati
Published: 4 June 2021
Last updated: 26 July 2025

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Journal articles on the topic "SNP array"

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Howard, Nicholas P., Michela Troggio, Charles-Eric Durel, et al. "Integration of Infinium and Axiom SNP array data in the outcrossing species Malus × domestica and causes for seemingly incompatible calls." BMC Genomics 22, no. 1 (2021): 246. https://doi.org/10.1186/s12864-021-07565-7.

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<strong>Background: </strong>Single nucleotide polymorphism (SNP) array technology has been increasingly used to generate large quantities of SNP data for use in genetic studies. As new arrays are developed to take advantage of new technology and of improved probe design using new genome sequence and panel data, a need to integrate data from different arrays and array platforms has arisen. This study was undertaken in view of our need for an integrated high-quality dataset of Illumina Infinium® 20 K and Affymetrix Axiom® 480 K SNP array data in apple (<i>Malus</i> × <i>domestica</i>). In this
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Rusnita, Dewi. "SNPs ANALYSIS AS A TOOL IN MOLECULAR GENETICS DIAGNOSTICS." Majalah Kedokteran Andalas 38, no. 1 (2015): 49. http://dx.doi.org/10.22338/mka.v38.i1.p49-56.2015.

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AbstrakSingle Nucleotide Polymorphism (SNP) merupakan variasi genetik yang ditemukan pada lebih dari 1% populasi. Haplotipe, yang merupakan sekelompok SNP atau alel dalam satu kromosom, dapat di turunkan ke generasi selanjutnya dan dapat digunakan untuk menelusuri gen penyebab penyakit (marker genetik). Artikel ini bertujuan menjelaskan aplikasi analisis SNP dalam diagnosis beberapa sindrom yang disebabkan gangguan genetik. Berdasarkan laporan studi terdahulu, sindrom yang disebabkan oleh UPD (uniparental disomy) maupun penyakit autosomal resesif yang muncul sebagai akibat perkawinan sedarah d
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Malek, Sami, Whitney Wright, Cheng Li, Sajid Shakhan, and Peter Ouillette. "Comparative Genomic Analysis of CLL Genomes Using Affymetrix 50K SNP Versus SNP 6.0 Arrays." Blood 112, no. 11 (2008): 3108. http://dx.doi.org/10.1182/blood.v112.11.3108.3108.

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Abstract Unbiased analysis of CLL genomes using intermediate resolution SNP arrays has identified subtypes of del13q14, del17p and del11q as well as high genomic complexity CLL. Additional information on genomic aberrations and polymorphic copy number variants (CNVs) in CLL may be obtained through application of the latest generation ultra-high-density SNP array technology to CLL genome analysis. We have analyzed 50 paired DNA samples (sorted CD19+ cells versus sorted CD3+ cells) from CLL patients with del13q14 type I and del17p on the Affymetrix SNP 6.0 array platform that were previously ana
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Ren, Yan, Mehar S. Khatkar, Callum MacPhillamy, et al. "Evaluating the Efficacy of Target Capture Sequencing for Genotyping in Cattle." Genes 15, no. 9 (2024): 1218. http://dx.doi.org/10.3390/genes15091218.

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(1) Background: Target capture sequencing (TCS) is potentially a cost-effective way to detect single-nucleotide polymorphisms (SNPs) and an alternative to SNP array-based genotyping. (2) Methods: We evaluated the effectiveness and reliability of TCS in cattle breeding scenarios using 48 female and 8 male samples. DNA was extracted from blood samples, targeted for 71,746 SNPs with TWIST probes, and sequenced on an MGI platform. GATK and BCFtools were evaluated for the best genotyping calling tool. The genotypes were compared to existing genotypes from the Versa50K SNP array of the same animals
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Stevens-Kroef, Marian, Daniel Olde Weghuis, Simone Wezenberg, et al. "Superior Identification of Prognostic Relevant Copy Number Abnormalities By SNP-Based Genomic Arrays As Compared to Interphase FISH in Multiple Myeloma." Blood 128, no. 22 (2016): 4426. http://dx.doi.org/10.1182/blood.v128.22.4426.4426.

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Abstract Multiple myeloma (MM) is a neoplasm that exhibits a broad heterogeneity in both biological behavior and clinical presentation. Specific copy number abnormalities (CNAs) such as hyperdiploidy, 1p loss, 1q gain, 13q loss and 17p loss (including the TP53 gene), and IGH translocations, such as t(4;14)(p16;q32) and t(14;16)(q32;q23), provide important information regarding prognosis and treatment response. Interphase fluorescence in situ hybridization (FISH) on enriched plasma cells, currently used in clinical diagnostics of MM, is a targeted test aimed at specific genomic loci. However, i
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Geibel, Johannes, Christian Reimer, Steffen Weigend, Annett Weigend, Torsten Pook, and Henner Simianer. "How array design creates SNP ascertainment bias." PLOS ONE 16, no. 3 (2021): e0245178. http://dx.doi.org/10.1371/journal.pone.0245178.

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Single nucleotide polymorphisms (SNPs), genotyped with arrays, have become a widely used marker type in population genetic analyses over the last 10 years. However, compared to whole genome re-sequencing data, arrays are known to lack a substantial proportion of globally rare variants and tend to be biased towards variants present in populations involved in the development process of the respective array. This affects population genetic estimators and is known as SNP ascertainment bias. We investigated factors contributing to ascertainment bias in array development by redesigning the Axiom™Gen
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Hiraoka, Yoko, Sergio Pietro Ferrante, Guohong Albert Wu, Claire T. Federici, and Mikeal L. Roose. "Development and Assessment of SNP Genotyping Arrays for Citrus and Its Close Relatives." Plants 13, no. 5 (2024): 691. http://dx.doi.org/10.3390/plants13050691.

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Rapid advancements in technologies provide various tools to analyze fruit crop genomes to better understand genetic diversity and relationships and aid in breeding. Genome-wide single nucleotide polymorphism (SNP) genotyping arrays offer highly multiplexed assays at a relatively low cost per data point. We report the development and validation of 1.4M SNP Axiom® Citrus HD Genotyping Array (Citrus 15AX 1 and Citrus 15AX 2) and 58K SNP Axiom® Citrus Genotyping Arrays for Citrus and close relatives. SNPs represented were chosen from a citrus variant discovery panel consisting of 41 diverse whole-
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Bianchi, Davide, Lucio Brancadoro, and Gabriella De Lorenzis. "Genetic Diversity and Population Structure in a Vitis spp. Core Collection Investigated by SNP Markers." Diversity 12, no. 3 (2020): 103. http://dx.doi.org/10.3390/d12030103.

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Single nucleotide polymorphism (SNP) genotyping arrays are powerful tools to measure the level of genetic polymorphism within a population. The coming of next-generation sequencing technologies led to identifying thousands and millions of SNP loci useful in assessing the genetic diversity. The Vitis genotyping array, containing 18k SNP loci, has been developed and used to detect genetic diversity of Vitis vinifera germplasm. So far, this array was not validated on non-vinifera genotypes used as grapevine rootstocks. In this work, a core collection of 70 grapevine rootstocks, composed of indivi
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Tait, Rich, Ryan Ferretti, Barry Simpson, et al. "34 Present and future of genomic test reporting in the cattle industry." Journal of Animal Science 97, Supplement_2 (2019): 19–20. http://dx.doi.org/10.1093/jas/skz122.036.

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Abstract A series of custom low density (LD) SNP genotyping platforms have been created over the years. Recognized by the GeneSeek Genomic Profiler (GGP) nomenclature, these SNP arrays have increased in size as new versions were created, such as: GGP-LD-v1 (n = 8,762), GGP-LD-v2 (n = 20,057), GGP-LD-v3 (n = 26,151), GGP-LD-v4 (n = 30,108), and GGP Bovine 50K (n = 47,843), all of which contained a base of the Illumina Bovine LD array (n = 7,931) and then added SNPs to provide maximum information content (Shannon Entropy) and optimal genomic coverage into target populations without specific rest
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Straub, T. M., M. D. Quinonez-Diaz, C. O. Valdez, D. R. Call, and D. P. Chandler. "Using DNA microarrays to detect multiple pathogen threats in water." Water Supply 4, no. 2 (2004): 107–14. http://dx.doi.org/10.2166/ws.2004.0035.

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We present four studies that illustrate the use of DNA microarrays for the detection and subsequent genotyping of waterborne pathogens. A genotyping array targeting four virulence factor genes in enterohemorrhagic Escherichia coli (EHEC) was tested. The arrays were clearly able to differentiate between E. coli O157:H7 genotypes and E. coli O91:H2. Non-pathogenic E. coli and non-target organisms were not detected on this array. In the second study, an hsp70 gene single nucleotide polymorphism (SNP) array for specific Cryptosporidium parvum detection was constructed to differentiate between prin
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Dissertations / Theses on the topic "SNP array"

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Kreuz, Markus. "Entwicklung und Implementierung von Auswertungswerkzeugen für Hochdurchsatz-DNA-Kopienzahl-Analysen und deren Anwendung auf Lymphomdaten." Doctoral thesis, Universitätsbibliothek Leipzig, 2015. http://nbn-resolving.de/urn:nbn:de:bsz:15-qucosa-161664.

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Aberrationen in der DNA-Kopienzahl sind häufige genetische Veränderungen bei malignen Lymphomerkrankungen. Zugewinne sowie Deletionen stellen dabei Mechanismen zur Onkogen-Aktivierung sowie Tumorsuppressorgen-Inaktivierung dar und tragen somit zur Pathogenese der Erkrankung bei. Array-CGH und SNP-Array sind Messplattformen, die die genomweite Bestimmung von Kopienzahlaberrationen in einem Experiment ermöglichen. Die bei der Analyse entstehenden Datensätze sind komplex und erfordern automatische Methoden zur Unterstützung der Analyse und Interpretation der Messergebnisse. In dieser Promotionsar
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Ramos, Alexis. "Cancer Genome Characterization with SNP Array and Whole-Exome Sequencing Analysis." Thesis, Harvard University, 2011. http://dissertations.umi.com/gsas.harvard:10036.

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Cancer, the uncontrolled growth of morphologically and genetically abnormal cells in the body, is a major worldwide public health problem and there is a great need for novel insights into this disease. The majority of tumors arise from the acquisition of somatic alterations leading to changes in gene function and expression. The clinical success of targeted therapeutics in molecularly defined subsets of patients has highlighted the need for comprehensive characterization of the somatic alterations in individual cancer types. Copy number profiling using SNP arrays is a common approach for profi
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Quinto, Cortes Consuelo Dayzu, and Cortes Consuelo Dayzu Quinto. "Inferring Demographic History of Admixed Human Populations with SNP Array Data." Diss., The University of Arizona, 2016. http://hdl.handle.net/10150/621870.

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The demographic history of human populations, both archaic and modern, have been the focus of extensive research. Earlier studies were based on a small number of genetic markers but technological advances have made possible the examination of data at the genome scale to answer important questions regarding the history of our species. A widely used application of single nucleotide polymorphisms (SNPs) are genotyping arrays that allow the study of several hundred thousand of these sites at the same time. However, most of the SNPs present in commercial genotyping arrays have often been discovered
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Oliveira, Lorraynne Guimarães. "O PAPEL DAS DUPLICAÇÕES SEGMENTARES NA FORMAÇÃO DE VARIAÇÃO DO NÚMERO DE CÓPIAS de novo APÓS A EXPOSIÇÃO PARENTAL A DOSES BAIXAS DE RADIAÇÃO IONIZANTE OBSERVADAS NA GERAÇÃO F1 DE INDIVÍDUOS ACIDENTALMENTE EXPOSTOS AO CÉSIO-137." Pontifícia Universidade Católica de Goiás, 2018. http://tede2.pucgoias.edu.br:8080/handle/tede/3999.

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Submitted by admin tede (tede@pucgoias.edu.br) on 2018-06-22T19:18:01Z No. of bitstreams: 1 LORRAYNNE GUIMARÃES OLIVEIRA.pdf: 972251 bytes, checksum: 3d1335f8344b25e2c479fd95096c777d (MD5)<br>Made available in DSpace on 2018-06-22T19:18:01Z (GMT). No. of bitstreams: 1 LORRAYNNE GUIMARÃES OLIVEIRA.pdf: 972251 bytes, checksum: 3d1335f8344b25e2c479fd95096c777d (MD5) Previous issue date: 2018-03-08<br>At the end of 1987 was one of the most serious radiological accidents in history, occurred in Goiânia-Goiás-Brazil, causing the contamination of the environment, succeending in the external irrad
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Romano, Alessandra. "High resolution molecular karyotyping and proteomic analysis in hematological malignancies." Thesis, Universita' degli Studi di Catania, 2011. http://hdl.handle.net/10761/96.

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Il presente lavoro di tesi ha applicato i risultati della genomica funzionale in termini traslazionali a due neoplasie ematologiche: le sindromi mielodislastiche (MDS), e il loro potenziale ventaglio di evoluzione a leucemia mieloide acuta, e l'altrettanto ampio spettro di gammopatie monoclonali, fino alla condizione di mieloma multiplo (MM). In entrambi i casi, infatti, le recenti acquisizioni derivanti dall`applicazione dei nuovi farmaci hanno evidenziato la necessita' di indirizzare l`approccio terapeutico contemporaneamente alle cellule neoplastiche e a quelle del microambiente. Nelle MDS
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Mattsson, Anna. "Difference in copy number variants in peripheral blood and bone marrow detected by SNP-array." Thesis, Umeå universitet, Biomedicinsk laboratorievetenskap, 2011. http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-58641.

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Levy, Jonathan. "Etude des variants rares et des régions d'homozygotie par SNP array dans les pathologies neurodéveloppementales." Thesis, Sorbonne Paris Cité, 2018. http://www.theses.fr/2018USPCC322.

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L’analyse chromosomique sur puce à ADN (ACPA) est actuellement l’examen réalisé en première intention dans le cadre de pathologies neurodéveloppementales. Les puces de type SNP sont des puces de génotypage qui peuvent détecter des CNVs (copie number variants) mais également des régions d’homozygotie (ROHs). Nous avons analysé par puce SNP une cohorte de 5 050 patients présentant un phénotype neurodéveloppemental. Dans un premier temps, nous nous sommes concentrés sur l’étude des CNVs contenant un ou deux gènes afin de caractériser le génotype et le phénotype associés à plusieurs syndromes micr
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PELLEGRINO, LAURA. "A MEDIUM RESOLUTION SNP ARRAY BASED COPY NUMBER VARIANTS SCAN IN BROWN SWISS DAIRY CATTLE." Doctoral thesis, Università degli Studi di Milano, 2013. http://hdl.handle.net/2434/218529.

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Recent reports indicate copy number variations (CNVs) to be functionally significant. This study presents a medium resolution map of CNV regions (CNVRs) in Brown Swiss dairy cattle, from to this day, the largest CNV genome scan in any cattle breed. We genotyped 1,342 bulls and after quality filtering on males we called CNVs with PennCNV and with “Copy Number Analysis Module” (CNAM) of SVS7 software (Goldenhelix) for a total of 46,728 loci anchored on the UMD3.1 assembly. We corrected for sequence composition flanking each SNP and employed principal component analysis for CNAM to correct for te
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Silva, Fernanda Borges da. "Uso do Single Nucleotide Polymorphism Array (SNP-A) na investigação de alterações citogenéticas em pacientes com síndromes mielodisplásicas." Universidade de São Paulo, 2016. http://www.teses.usp.br/teses/disponiveis/17/17154/tde-29032017-164341/.

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As síndromes mielodisplásicas (SMD) constituem um grupo heterogêneo de doenças hematológicas de origem clonal, caracterizado por hematopoese ineficaz, citopenia e risco de evolução para leucemia mieloide aguda (LMA). As anormalidades citogenéticas adquiridas são marcadores prognósticos bem estabelecidos em SMD. No entanto, a técnica de citogenética metafásica apresenta limitações, incluindo baixa resolução e necessidade de divisão celular, sendo que defeitos cromossômicos podem não ser detectados. Tecnologias baseadas em microarranjo (array) de DNA, como o Single Nucleotide Polymorphism Array
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PICECI, SPARASCIO FRANCESCA. "Study of molecular basis of Oculo-Auricolo-Vertebral-Spectrum." Doctoral thesis, Università di Foggia, 2017. http://hdl.handle.net/11369/363288.

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Lo spettro Oculo auriculo vertebrale (OAVS; OMIM 164210) è una patologia clinicamente e geneticamente eterogenea che deriva dallo sviluppo anomalo dei derivati del primo e del secondo arco branchiale. Le principali caratteristiche cliniche includono difetti dello sviluppo oculare, auricolare, mandibolare e vertebrale. Possono inoltre essere presenti anomalie del sistema nervoso centrale, anomalie cardiache, polmonari, renali e scheletriche. Sebbene l’eziologia non sia ancora nota, l'individuazione di alcune famiglie che presentano un eredità di tipo autosomico dominante e autosomico rece
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Books on the topic "SNP array"

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A, Prell Mark, and United States. Department of Agriculture. Economic Research Service, eds. Food security improved following the 2009 ARRA increase in SNAP benefits. U.S. Dept. of Agriculture, Economic Research Service, 2011.

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Herle, Anita, and Jude Philp, eds. Recording Kastom. Sydney University Press, 2020. http://dx.doi.org/10.30722/sup.9781743326480.

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Recording Kastom brings readers into the heart of colonial Torres Strait and New Guinea through the personal journals of Cambridge zoologist and anthropologist Alfred Haddon, who visited the region in 1888 and 1898. Haddon's published reports of these trips were hugely influential on the nascent discipline of anthropology, but his private journals and sketches have never been published in full. The journals record in vivid detail Haddon's observations and relationships. They highlight his preoccupation with documentation, and the central role played by the Islanders who worked with him to reco
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Rickard, David. Framboids. Oxford University Press, 2021. http://dx.doi.org/10.1093/oso/9780190080112.001.0001.

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Framboids may be the most astonishing and abundant natural features you have never heard of. These microscopic spherules of golden pyrite consist of thousands of even smaller microcrystals, often arranged in stunning geometric arrays. There are probably 10<sup>30</sup> on Earth, and they are forming at a rate of 10<sup>20</sup> every second. This means that there are a billion times more framboids than sand grains on Earth, and a million times more framboids than stars in the observable universe. They are all around us: they can be found in rocks of all ages and in present-day sediments, soils
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Martell, Christine R., Tima T. Moldogaziev, and Salvador Espinosa. Information Resolution and Subnational Capital Markets. Oxford University Press, 2021. http://dx.doi.org/10.1093/oso/9780190089337.001.0001.

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This book theorizes that information is a critical factor for subnational government (SNG) capital market formation and development. It empirically tests the stated relationship between information resolution institutions and mechanisms of information resolution on SNG borrowing. Based on empirical results, analyses of underlying fundamentals of city credit quality, and the study of contexts of information resolution reforms, the book recommends policy measures for central governments, regional and local governments, and financial sector firms to build capital markets for subnational borrowing
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Book chapters on the topic "SNP array"

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Szuhai, Karoly. "Array-CGH and SNP-Arrays, the New Karyotype." In Microarrays in Diagnostics and Biomarker Development. Springer Berlin Heidelberg, 2012. http://dx.doi.org/10.1007/978-3-662-45800-6_5.

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Lam, Ching-Wan, and Kin-Chong Lau. "Candidate Screening through High-Density SNP Array." In Gene Discovery for Disease Models. John Wiley & Sons, Inc., 2012. http://dx.doi.org/10.1002/9780470933947.ch10.

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Podsiadly, Przemyslaw. "Estimation of Missing Values in SNP Array." In Modern Advances in Applied Intelligence. Springer International Publishing, 2014. http://dx.doi.org/10.1007/978-3-319-07467-2_45.

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Scharpf, Robert B., and Ingo Ruczinski. "R Classes and Methods for SNP Array Data." In Methods in Molecular Biology. Humana Press, 2009. http://dx.doi.org/10.1007/978-1-60327-194-3_4.

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Liu, Shikai, Qifan Zeng, Xiaozhu Wang, and Zhanjiang Liu. "SNP Array Development, Genotyping, Data Analysis, and Applications." In Bioinformatics in Aquaculture. John Wiley & Sons, Ltd, 2017. http://dx.doi.org/10.1002/9781118782392.ch18.

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Han, Yuanhong, Dong-Man Khu, Xuehui Li, et al. "High Density Array for SNP Genotyping and Mapping in Tetraploid Alfalfa." In Quantitative Traits Breeding for Multifunctional Grasslands and Turf. Springer Netherlands, 2014. http://dx.doi.org/10.1007/978-94-017-9044-4_35.

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Treff, Nathan R., Eric J. Forman, and Richard T. Scott. "SNP Array, qPCR, and Next-Generation Sequencing-Based Comprehensive Chromosome Screening." In Screening the Single Euploid Embryo. Springer International Publishing, 2015. http://dx.doi.org/10.1007/978-3-319-16892-0_14.

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Burridge, Amanda J., Mark O. Winfield, Alexandra M. Allen, et al. "High-Density SNP Genotyping Array for Hexaploid Wheat and Its Relatives." In Methods in Molecular Biology. Springer New York, 2017. http://dx.doi.org/10.1007/978-1-4939-7337-8_19.

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Winchester, Laura, and Jiannis Ragoussis. "Algorithm Implementation for CNV Discovery Using Affymetrix and Illumina SNP Array Data." In Methods in Molecular Biology. Springer New York, 2011. http://dx.doi.org/10.1007/978-1-61779-507-7_14.

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McCue, Molly, and Jim Mickelson. "Genomic Tools and Resources: Development and Applications of an Equine SNP Genotyping Array." In Equine Genomics. Blackwell Publishing Ltd., 2013. http://dx.doi.org/10.1002/9781118522158.ch7.

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Conference papers on the topic "SNP array"

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Liu, Yuanning, Xiao Zhang, Minghui Wang, Huanqing Feng, and Ao Li. "A Novel CNA/LOH Detection Algorithm Using Normal-Tumor SNP-Array Data." In 2013 6th International Symposium on Computational Intelligence and Design (ISCID). IEEE, 2013. http://dx.doi.org/10.1109/iscid.2013.189.

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Zec, Helena, Tushar D. Rane, Wen-Chy Chu, and Tza-Huei Wang. "Microfluidic Combinatorial Screening Platform." In ASME 2012 10th International Conference on Nanochannels, Microchannels, and Minichannels collocated with the ASME 2012 Heat Transfer Summer Conference and the ASME 2012 Fluids Engineering Division Summer Meeting. American Society of Mechanical Engineers, 2012. http://dx.doi.org/10.1115/icnmm2012-73159.

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We propose a microfluidic droplet-based platform that accepts an unlimited number of sample plugs from a multi-well plate, performs splitting of these sample droplets into smaller daughter droplets and subsequent synchronization-free, reliable fusion of sample daughter droplets with multiple reagents simultaneously. This system consists of two components: 1) a custom autosampler which generates a linear array of sub-microliter plugs in a microcapillary from a multi-well plate and 2) A microfluidic chip with channels for sample plug introduction, reagent merging and droplet incubation. This nov
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Kämpjärvi, Kati, Miika Mehine, Pia Vahteristo, and Lauri A. Aaltonen. "Abstract 1998: Exome sequencing and SNP array analysis of HLRCC syndromic uterine leiomyomas." In Proceedings: AACR 104th Annual Meeting 2013; Apr 6-10, 2013; Washington, DC. American Association for Cancer Research, 2013. http://dx.doi.org/10.1158/1538-7445.am2013-1998.

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Guadagnuolo, Viviana, Maria Chiara Fontana, Antonella Padella, et al. "Abstract 4848: SNP array reveals a new deletion of JAK2 in AML patients." In Proceedings: AACR 106th Annual Meeting 2015; April 18-22, 2015; Philadelphia, PA. American Association for Cancer Research, 2015. http://dx.doi.org/10.1158/1538-7445.am2015-4848.

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Brajkovic, V., L. Bradic, K. Turkalj, et al. "685. Selection, validation, and utilization of mitogenome SNP array information in cattle breeding." In World Congress on Genetics Applied to Livestock Production. Wageningen Academic Publishers, 2022. http://dx.doi.org/10.3920/978-90-8686-940-4_685.

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Christie, Nanette. "A geme-wide 50K SNP getyping array for tropical and sub-tropical pine tree species." In ASPB PLANT BIOLOGY 2020. ASPB, 2020. http://dx.doi.org/10.46678/pb.20.1053018.

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Munoz, Jorge, Yuriy S. Shmaliy, and Roberto Olivera. "An Algorithm for Bounding Error in Estimates of Genome Copy Number Variations Using SNP Array Technology." In 2015 Fourteenth Mexican International Conference on Artificial Intelligence (MICAI). IEEE, 2015. http://dx.doi.org/10.1109/micai.2015.40.

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Erickson, David, Xuezhu Liu, Roberto Venditti, Ulrich Krull, and Dongqing Li. "A DNA Hybridization Chip With Electrokinetically-Based Single Nucleotide Polymorphism (SNP) Discrimination." In ASME 2004 International Mechanical Engineering Congress and Exposition. ASMEDC, 2004. http://dx.doi.org/10.1115/imece2004-59320.

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Biosensors and more specifically biochips exploit the interactions between a target analyte and an immobilized biological recognition element to produce a measurable signal. Systems based on surface phase nucleic acid hybridization, such as modern microarrays, are particularly attractive due to the high degree of selectivity in the binding interactions. In this work an electrokinetically controlled poly(dimethylsiloxane) based DNA hybridization microfluidic chip is presented. The electrokinetic delivery technique provides the ability to dispense controlled sample sizes to the hybridization arr
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Bandla, Santhoshi, Andrew Feber, Marie Reveiller, Arjun Pennathur, James Luketich, and Tony E. Godfrey. "Abstract LB-405: High density SNP array copy number analysis of esophageal adenocarcinoma: Associations with clinical outcomes." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-lb-405.

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Tada, Motohisa, Fumihiko Kanai, Yoshinari Asaoka, et al. "Abstract 1184: Prognostic significance of genetic alterations detected by high-density single nucleotide polymorphism (SNP) array in gastrointestinal cancer." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-1184.

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Reports on the topic "SNP array"

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Sherman, Amir, Rebecca Grumet, Ron Ophir, Nurit Katzir, and Yiqun Weng. Whole genome approach for genetic analysis in cucumber: Fruit size as a test case. United States Department of Agriculture, 2013. http://dx.doi.org/10.32747/2013.7594399.bard.

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The Cucurbitaceae family includes a broad array of economically and nutritionally important crop species that are consumed as vegetables, staple starches and desserts. Fruit of these species, and types within species, exhibit extensive diversity as evidenced by variation in size, shape, color, flavor, and others. Fruit size and shape are critical quality determinants that delineate uses and market classes and are key traits under selection in breeding programs. However, the underlying genetic bases for variation in fruit size remain to be determined. A few species the Cucurbitaceae family were
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Gardner, S., and C. Jaing. Interim report on updated microarray probes for the LLNL Burkholderia pseudomallei SNP array. Office of Scientific and Technical Information (OSTI), 2012. http://dx.doi.org/10.2172/1047245.

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Sela, Hanan, Eduard Akhunov, and Brian J. Steffenson. Population genomics, linkage disequilibrium and association mapping of stripe rust resistance genes in wild emmer wheat, Triticum turgidum ssp. dicoccoides. United States Department of Agriculture, 2014. http://dx.doi.org/10.32747/2014.7598170.bard.

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The primary goals of this project were: (1) development of a genetically characterized association panel of wild emmer for high resolution analysis of the genetic basis of complex traits; (2) characterization and mapping of genes and QTL for seedling and adult plant resistance to stripe rust in wild emmer populations; (3) characterization of LD patterns along wild emmer chromosomes; (4) elucidation of the multi-locus genetic structure of wild emmer populations and its correlation with geo-climatic variables at the collection sites. Introduction In recent years, Stripe (yellow) rust (Yr) caused
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Joel, Daniel M., Steven J. Knapp, and Yaakov Tadmor. Genomic Approaches for Understanding Virulence and Resistance in the Sunflower-Orobanche Host-Parasite Interaction. United States Department of Agriculture, 2011. http://dx.doi.org/10.32747/2011.7592655.bard.

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Oroginal Objectives: (i) identify DNA markers linked to the avirulence (Avr) locus and locate the Avr locus through genetic mapping with an inter-race Orobanche cumana population; (ii) develop high-throughput fingerprint DNA markers for genotypingO. cumana races; (iii) identify nucleotide binding domain leucine rich repeat (NB-LRR) genes encoding R proteins conferring resistance to O. cumana in sunflower; (iv) increase the resolution of the chromosomal segment harboring Or₅ and related R genes through genetic and physical mapping in previously and newly developed mapping populations of sunflow
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Quinn, Meghan. Geotechnical effects on fiber optic distributed acoustic sensing performance. Engineer Research and Development Center (U.S.), 2021. http://dx.doi.org/10.21079/11681/41325.

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Distributed Acoustic Sensing (DAS) is a fiber optic sensing system that is used for vibration monitoring. At a minimum, DAS is composed of a fiber optic cable and an optic analyzer called an interrogator. The oil and gas industry has used DAS for over a decade to monitor infrastructure such as pipelines for leaks, and in recent years changes in DAS performance over time have been observed for DAS arrays that are buried in the ground. This dissertation investigates the effect that soil type, soil temperature, soil moisture, time in-situ, and vehicle loading have on DAS performance for fiber opt
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Hovav, Ran, Peggy Ozias-Akins, and Scott A. Jackson. The genetics of pod-filling in peanut under water-limiting conditions. United States Department of Agriculture, 2012. http://dx.doi.org/10.32747/2012.7597923.bard.

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Pod-filling, an important yield-determining stage is strongly influenced by water stress. This is particularly true for peanut (Arachishypogaea), wherein pods are developed underground and are directly affected by the water condition. Pod-filling in peanut has a significant genetic component as well, since genotypes are considerably varied in their pod-fill (PF) and seed-fill (SF) potential. The goals of this research were to: Examine the effects of genotype, irrigation, and genotype X irrigation on PF and SF. Detect global changes in mRNA and metabolites levels that accompany PF and SF. Explo
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Seroussi, Eyal, and George Liu. Genome-Wide Association Study of Copy Number Variation and QTL for Economic Traits in Holstein Cattle. United States Department of Agriculture, 2010. http://dx.doi.org/10.32747/2010.7593397.bard.

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Copy number variation (CNV) has been recently identified in human and other mammalian genomes and increasing awareness that CNV might be a major source for heritable variation in complex traits has emerged. Despite this, little has been published on CNVs in Holsteins. In order to fill this knowledge-gap, we proposed a genome-wide association study between quantitative trait loci (QTL) for economic traits and CNV in the Holstein cattle. The approved feasibility study was aimed at the genome-wide characterization of CNVs in Holstein cattle and at the demonstrating of their possible association w
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Nijhuis, Chris, Bertjan Verbeek, and Andrej Zaslove. Disagreement among populists in the Netherlands: The diverging rhetorical and policy positions of Dutch populist Radical Right parties following Russia’s invasion of Ukraine. European Center for Populism Studies (ECPS), 2023. http://dx.doi.org/10.55271/rp0032.

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The Netherlands boasts a wide array of populist Radical Right parties, from the Freedom Party (PVV) and Forum for Democracy (FvD) to Correct Alternative 2021 (JA21). To complicate matters further, the left-wing Socialist Party (SP) is also considered a populist party. Mirroring the diversity of responses to the Russian invasion of Ukraine in the rest of Europe, Dutch populist parties have reacted in myriad ways. Whereas the PVV condemned the Russian invasion, the FvD remained highly supportive of Putin. Interestingly, while many European populist Radical Right leaders, following public opinion
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Eshed, Yuval, and Sarah Hake. Exploring General and Specific Regulators of Phase Transitions for Crop Improvement. United States Department of Agriculture, 2012. http://dx.doi.org/10.32747/2012.7699851.bard.

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The transition of plants from a juvenile to adult growth phase entails a wide range of changes in growth habit, physiological competence and composition. Strikingly, most of these changes are coordinated by the expression of a single regulator, micro RNA 156 (miR156) that coordinately regulates a family of SBP genes containing a miR156 recognition site in the coding region or in their 3’ UTR. In the framework of this research, we have taken a broad taxonomic approach to examine the role of miR156 and other genetic regulators in phase change transition and its implication to plant development a
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Cytryn, E., Sean F. Brady, and O. Frenkel. Cutting edge culture independent pipeline for detection of novel anti-fungal plant protection compounds in suppressive soils. United States-Israel Binational Agricultural Research and Development Fund, 2022. http://dx.doi.org/10.32747/2022.8134142.bard.

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Fusarium oxysporum spp. causes Panama disease in bananas and crown and root rot in an array of vegetables and field crops, but increased regulations have restricted the use of many conventional chemical pesticides, and there are a limited number of commercially available products effective against them. The soil microbiome represents a largely untapped reservoir of secondary metabolites that can potentially antagonize fungal pathogens. However, most soil bacteria cannot be cultivated using conventional techniques and therefore most of these compounds remain unexplored. The overall goal of this
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