Relevant bibliographies by topics / SNP development

Contents

  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers
  6. Reports

Academic literature on the topic 'SNP development'

Author: Grafiati
Published: 4 June 2021
Last updated: 12 February 2022

Create a spot-on reference in APA, MLA, Chicago, Harvard, and other styles

Select a source type:

Consult the lists of relevant articles, books, theses, conference reports, and other scholarly sources on the topic 'SNP development.'

Next to every source in the list of references, there is an 'Add to bibliography' button. Press on it, and we will generate automatically the bibliographic reference to the chosen work in the citation style you need: APA, MLA, Harvard, Chicago, Vancouver, etc.

You can also download the full text of the academic publication as pdf and read online its abstract whenever available in the metadata.

Journal articles on the topic "SNP development"

1

Dixon, L. A., P. Koumi, and Peter Gill. "Development of an autosomal SNP multiplex containing 20 SNP loci plus Amelogenin." International Congress Series 1288 (April 2006): 31–33. http://dx.doi.org/10.1016/j.ics.2005.08.041.

Full text
APA, Harvard, Vancouver, ISO, and other styles
2

Kim, Jae-Jung, Bok-Ghee Han, Hae-In Lee, Han-Wook Yoo, and Jong-Keuk Lee. "Development of SNP-based human identification system." International Journal of Legal Medicine 124, no. 2 (November 18, 2009): 125–31. http://dx.doi.org/10.1007/s00414-009-0389-9.

Full text
APA, Harvard, Vancouver, ISO, and other styles
3

Gangopadhyay, Debnirmalya, Ashmita Ghosh, and Mrinal Ray. "Seribiodiversity and their Role in Sustainable Development in India." INTERNATIONAL JOURNAL OF PLANT AND ENVIRONMENT 5, no. 04 (October 31, 2019): 243–46. http://dx.doi.org/10.18811/ijpen.v5i04.3.

Full text
Abstract:
Nitric oxide (NO) is an important bioactive signaling molecule in plants which modulates a variety of physiological processes and responses to abiotic and biotic stresses. In this study, the effects of exogenous NO supplied as sodium nitroprusside (SNP) in wheat seedlings under ironinduced oxidative damage was investigated. An appropriate concentration of NO was determined by conducting a preliminary experiment. In solution culture, wheat seeds were grown in the control (100 μM Fe), and toxic Fe (400 μM Fe) levels and the toxic Fe supply was treated with various levels of (50, 100, 200 and 500 μM) sodium nitroprusside (SNP). The results indicated that 400 μM Fe significantly decreased percentage germination, tolerance index, root lengths as well as fresh and dry weight compared to control. Exogenous SNP attenuated the inhibition of wheat seed germination. The promoting effect was most pronounced at 100 μM SNP. The accumulated concentration of iron and active Fe was significantly decreased by SNP treated Fe toxic seedlings. Toxicity of Fe caused oxidative stress by elevating hydrogen peroxide (H2O2), malondialdehyde (MDA) and proline contents in roots of wheat seedlings. One hundred μM SNP counteracted Fe toxicity by reducing the H2O2, MDA and proline contents of toxic Fe exposed seedlings. Meanwhile, application of SNP markedly reduced the activities of superoxide dismutases (SOD), catalases (CAT), peroxidase (POD), ascorbate peroxidases (APX), non protein thiols (NPT) and of glutathione reductase (GR) and increased ascorbate (ASc) compared with Fe toxic treatment alone, thereby indicating the modulation of the antioxidative capacity in the root under Fe stress by NO. The results indicated that the exogenous application of SNP, improved the antioxidant enzymes activity of wheat seedlings against Fe induced oxidative stress.
APA, Harvard, Vancouver, ISO, and other styles
4

Chagné, David, Ross N. Crowhurst, Michela Troggio, Mark W. Davey, Barbara Gilmore, Cindy Lawley, Stijn Vanderzande, et al. "Genome-Wide SNP Detection, Validation, and Development of an 8K SNP Array for Apple." PLoS ONE 7, no. 2 (February 21, 2012): e31745. http://dx.doi.org/10.1371/journal.pone.0031745.

Full text
APA, Harvard, Vancouver, ISO, and other styles
5

Kim, Sang-Wook, Xiaoping Li, Yun-Mi Lee, Jong-Joo Kim, Tae-Hun Kim, Bong-Hwan Choi, and Kwan-Suk Kim. "Development of SNP Markers for Domestic Pork Traceability." Journal of Animal Science and Technology 52, no. 2 (April 30, 2010): 91–96. http://dx.doi.org/10.5187/jast.2010.52.2.091.

Full text
APA, Harvard, Vancouver, ISO, and other styles
6

Zar, Mian Sahib, Ahmad Ali Shahid, Muhammad Saqib Shahzad, Kyoung-Jin Shin, Hwan Young Lee, Sang-Seob Lee, Muhammad Israr, Peter Wiegand, and Galina Kulstein. "Forensic SNP Genotyping with SNaPshot: Development of a Novel In-house SBE Multiplex SNP Assay,." Journal of Forensic Sciences 63, no. 6 (April 10, 2018): 1824–29. http://dx.doi.org/10.1111/1556-4029.13783.

Full text
APA, Harvard, Vancouver, ISO, and other styles
7

Ellonen, P., M. Levander, I. Ulmanen, and M. Lukka. "Development of SNP microarray for supplementary paternity testing." International Congress Series 1261 (April 2004): 12–14. http://dx.doi.org/10.1016/s0531-5131(03)01824-7.

Full text
APA, Harvard, Vancouver, ISO, and other styles
8

McCouch, Susan R., Keyan Zhao, Mark Wright, Chih-Wei Tung, Kaworu Ebana, Michael Thomson, Andy Reynolds, et al. "Development of genome-wide SNP assays for rice." Breeding Science 60, no. 5 (2010): 524–35. http://dx.doi.org/10.1270/jsbbs.60.524.

Full text
APA, Harvard, Vancouver, ISO, and other styles
9

Daniłowicz, Emilia, Mansoureh Akouchekian, Cord Drögemüller, Bianca Haase, Heidi Kuiper, Ottmar Distl, Tosso Leeb, and FUGATO-consortium IRAS∗. "Molecular Characterization and SNP Development for the PorcineIl6andIl10Genes." Animal Biotechnology 19, no. 3 (July 7, 2008): 159–65. http://dx.doi.org/10.1080/10495390802088621.

Full text
APA, Harvard, Vancouver, ISO, and other styles
10

Ferraz, J. B. S., X. L. Wu, H. Li, J. Xu, R. Ferretti, B. Simpson, J. Walker, et al. "Development and evaluation of a low-density single-nucleotide polymorphism chip specific to Bos indicus cattle." Animal Production Science 60, no. 15 (2020): 1769. http://dx.doi.org/10.1071/an19396.

Full text
Abstract:
Context Genomic selection has been of increasing interest in the genetic improvement of Zebu cattle, particularly for quantitative traits that are difficult or expensive to measure, such as carcass traits and meat tenderness. The success of genomic selection depends on several factors, and at its core is the availability of single-nucleotide polymorphism (SNP) chips that are appropriately designed for Bos indicus cattle. However, the currently available commercial bovine SNP chips are mostly designed for Bos taurus cattle. There are two commercial Bos indicus SNP chips; namely, GeneSeek genomic profiler high-density Bos indicus (GGP-HDi) SNP chip and a low-density (LD) Bos indicus SNP chip (Z chip), but these two Bos indicus SNP chips were built with mixed contents of SNPs for Bos indicus and Bos taurus cattle, due to limited availability of genotype data from Bos indicus cattle. Aims To develop a new GGP indicus 35000 SNP chip specifically for Bos indicus cattle, which has a low cost, but high accuracy of imputation to Illumina BovineHD chips. Methods The design of the chip consisted of 34000 optimally selected SNPs, plus 1000 SNPs pre-reserved for those on the Y chromosome, ‘causative’ mutations for a variety of economically relevant traits, genetic health conditions and International Society for Animal Genetics globally recognised parentage markers for those breeds of cattle. Key results The present results showed that this new indicus LD SNP chip had considerably increased minor allele frequencies in indicus breeds than the previous Z-chip. It demonstrated with high imputation accuracy to HD SNP genotypes in five indicus breeds, and with considerable predictability on 14 growth and reproduction traits in Nellore cattle. Conclusions This new indicus LD chip represented a successful effort to leverage existing knowledge and genotype resources towards the public release of a cost-effective LD SNP chip specifically for Bos indicus cattle, which is expected to replace the previous GGP indicus LD chip and to supplement the existing GGP-HDi 80000 SNP chip. Implications A new SNP chip specifically designed for Bos indicus, with high power of imputation to Illumina BovineHD technology and with excellent coverage of the whole genome, is now available on the market for Bos indicus cattle, and Bos indicus and Bos taurus crosses.
APA, Harvard, Vancouver, ISO, and other styles
More sources

Dissertations / Theses on the topic "SNP development"

1

Colley, James P. M. "The development and application of SNP discovery technologies from 2005 to 2012." Thesis, Cardiff University, 2012. http://orca.cf.ac.uk/41990/.

Full text
Abstract:
Single Nucleotide Polymorphisms (SNPs) are used as markers in association studies and may contribute directly to inherited disease. Here, we investigated high throughput in silico and in vitro methods for identifying SNPs and applied these to large scale genomic projects. We evaluated the utility of the Transgenomic NavigatorTM software to facilitate automated detection of aberrant denaturing high performance liquid chromatography (dHPLC) elution profiles. 3,747 dHPLC profiles were analysed with this software and 98.3% of products with profiles distinct from wild type harboured novel variants (Chapter 3). We applied this software to investigate whether rare inherited variants in genes that play a role in oxidative DNA damage repair (OxDR) predispose to colorectal adenomas (CRA) and found that unlike MUTYH, inherited variants in other OxDR genes are unlikely to be a frequent cause of CRA (Chapter 4). We evaluated the sequence analysis packages Sequencher, InSNP, Mutation Surveyor and Staden to identify variants in patients with CRAs (using >4,000 chromatograms). Staden and Mutation Surveyor correctly identified 76/77 (98.7%) SNPs and 96.7% and 99.3% of the genotypes respectively (Chapter 5). We compared an optimised version of Staden against Sequencher for variant detection over a 2.5kb region of the adenomatous polyposis coli (APC) gene in 969 healthy controls. We found 100% concordance between these packages and found that rare nonsynonymous variants in APC were significantly over-represented in patients with CRAs as compared to healthy controls (32/480 vs. 37/969, P=0.0166) (Chapter 5). We evaluated data held in dbSNP (build 129) for common variants in the Caucasian population by examining ten DNA repair genes and subsequently developed software for automatically extracting selected information from dbSNP (Chapter 6). This program was used to rapidly identify 221 common nonsynonymous SNPs in every DNA repair gene in the human genome; these were subsequently typed in 480 publically-available human lymphoblastoid cell lines generating a resource for functional analyses (Chapter 6). We also assessed the role of these SNPs in susceptibility to CRC and response to therapy by exploiting data and samples for the randomised controlled trial COIN (Chapter 7). Finally, we used Next Generation Sequencing (NGS) to discover SNPs in the exomes of 10 patients that exhibited peripheral neuropathy in response to chemotherapy and discovered that ERCC4 nonsense mutations may contribute to this toxicity (Chapter 8). NGS is likely to become the key SNP discovery technique over the next decade due to its potential to comprehensively search an entire genome at a comparatively low cost.
APA, Harvard, Vancouver, ISO, and other styles
2

Probst, Mario C. O. "Development and evaluation of multiplex and high-throughput SNP analysis for the ABCA1 gene." [S.l.] : [s.n.], 2004. http://deposit.ddb.de/cgi-bin/dokserv?idn=970904533.

Full text
APA, Harvard, Vancouver, ISO, and other styles
3

An, Chuanfu. "SNP CHARACTERIZAITON AND GENETIC AND MOLECULAR ANALYSIS OF MUTANTS AFFECTING FIBER DEVELOPMENT IN COTTON." MSSTATE, 2008. http://sun.library.msstate.edu/ETD-db/theses/available/etd-03302008-191842/.

Full text
Abstract:
Cotton (Gossypium spp.) is the worlds leading textile fiber crop, and an important source of oil and protein. Insufficient candidate gene derived-markers suitable for genetic mapping and limited information on genes that control economically important traits are the major impediments to the genetic improvement of Upland cotton (G. hirsutum L.). The objectives of this study were to develop a SNP marker discovery strategy in tetraploid cotton species, SNP characterization and marker development from fiber initiation and elongation related genes, chromosomal assignment of these genes by SNP marker-based deletion analysis or linkage mapping, and genetic and molecular analysis of mutants affecting cotton fiber development. Phylogenetic grouping and comparision to At- and Dt-genome putative ancestral diploid species of allotetraploid cotton facilitated differentiation between genome specific polymorphisms (GSPs) and marker-suitable locus-specific polymorphisms (LSPs). By employing this strategry, a total of 222 and 108 SNPs were identified and the average frequency of SNP was 2.35% and 1.30% in six EXPANSIN A genes and six MYB genes, respectively. Both gene families showed independent and incongruent evolution in the two subgenomes and a faster evolution rate in Dt-genome than that in At-genome. SNPs were concordantly mapped to different chromsomes, which confirmed their value as candidate gene marker and indicated the reliability of SNP discovery stragey. QTL mapping by two F2 populations developed from fiber mutants detected major QTL which explain 62.8-87.1% of the phenotypic variation for lint percentage or lint index in the vicinity of BNL3482-138 on chromosome 26. Single marker regression analyses indicated STV79-108, which was located to the long arm of chromosome 12 (the known location of N1 and perhaps n2 loci), also had significant association (R2 % value 15.4-30.6) with lint percentage, lint index, embryo protein percentage and micronaire. Additional QTL and significant markers associated with other seed and fiber traits were detected on different chromosomes. Inheritance analysis indicated that both genetic models N1N1n2n2 and n2n2li3lisub>3 could lead to the fiberless phenotype. The observation of fuzzless-short lint phenotype indicated fiber initiation and elongation were controlled by different mechanisms. The penetrance of Li2 gene expression was observed in this study.
APA, Harvard, Vancouver, ISO, and other styles
4

Silva, Junior Orzenil Bonfim da. "Development and applications of high-throughput SNP genotyping technologies in non-model plant genomes." Universidade Cat??lica de Bras??lia, 2017. https://bdtd.ucb.br:8443/jspui/handle/tede/2273.

Full text
Abstract:
Submitted by Sara Ribeiro (sara.ribeiro@ucb.br) on 2017-09-08T18:11:30Z No. of bitstreams: 1 OrzenilBonfimdaSilvaJuniorTeseParcial2017.pdf: 781918 bytes, checksum: 8eef627ca550957f6bfa1f46e54c687c (MD5)
Approved for entry into archive by Sara Ribeiro (sara.ribeiro@ucb.br) on 2017-09-08T18:11:38Z (GMT) No. of bitstreams: 1 OrzenilBonfimdaSilvaJuniorTeseParcial2017.pdf: 781918 bytes, checksum: 8eef627ca550957f6bfa1f46e54c687c (MD5)
Made available in DSpace on 2017-09-08T18:11:38Z (GMT). No. of bitstreams: 1 OrzenilBonfimdaSilvaJuniorTeseParcial2017.pdf: 781918 bytes, checksum: 8eef627ca550957f6bfa1f46e54c687c (MD5) Previous issue date: 2017-07-11
In the last twenty-five years, we have witnessed the wide adoption of DNA markers for the study of genetic variation in many organisms. A DNA marker must have two or more identifiable allelic DNA sequences to be useful. It usually does not have a biological effect, but instead functions as a traceable landmark in the genome, found in a specific location, and transmitted by the standard laws of inheritance from one generation to the next. Its application goes beyond genetic mapping and includes the analysis of genetic diversity, marker-trait association studies, marker assisted selection and, more recently, with the advent of wholegenome sequencing, whole-genome association and genomic selection. Among the several types of DNA sequence polymorphisms that can be used as DNA marker, Single Nucleotide Polymorphisms (SNPs) are the most powerful for large-scale variation analysis. There are vast numbers of SNPs in every genome and they can be typed by methods that have been proven easy to automate. Detection of alternative alleles is rapid and effortless because it is based on well-known polymerase chain reaction and DNA oligomer hybridization assays. Various strategies have been devised to discriminate alleles at a SNP, including fixed DNA arrays technologies, solution hybridization techniques and many sequencing-based genotyping. In our study, we have developed high-throughput DNA marker systems for non-model, highly heterozygous, diploid tree species. We took advantage of the combined power of Next Generation Sequencing (NGS) technologies, well-established highly automated methods of SNP typing and bioinformatics algorithms to perform genome-wide DNA variation analysis. We used whole genome resequencing of pooled individuals to develop a high-density 60K SNP chip for Eucalyptus species (EucHIP60k) providing a 96% genome-wide coverage with 1 SNP/12???20 kbp, and 47,069 SNPs at ??? 10 kb from 30,444 of the 33,917 genes in the Eucalyptus genome. We then used high-density SNP data and whole-genome pooled resequencing to examine the landscape of population recombination (??) and theta (??), assess the extent of linkage disequilibrium (r2) and build the highest density linkage maps for Eucalyptus to date. Chromosome-wide ancestral recombination graphs allowed us to date the split of Eucalytpus grandis (1.7???4.8 million yr. ago) and identify a scenario for the recent demographic history of the species. In a final set of studies, we built the first genome assembly for a Neotropical forest tree, the Pink Ip?? (Handroanthus impetiginosus), a highly-valued keystone timber species. Genome sequence was screened for the development of a targeted-capture sequencing system for SNP genotyping consisting of nearly 24,000 probe sequences. This genotyping system showed flexibility as it allowed the identification of SNPs across different populations of the species in moderate sample sizes. The good genome coverage, consistent Ts/Tv ratio estimated across samples and fair technical reproducibility between replicates, in terms of recall and precision of the SNP calling and accuracy on genotypes, indicate that this genotyping platform can be confidently used to estimate population genetics parameters and carry out population genomics investigations at the genome-wide scale
***
APA, Harvard, Vancouver, ISO, and other styles
5

Halpern, Micah. "DEVELOPMENT AND FORENSIC APPLICATION OF DYE PROBE FLUORESCENCE RESONANCE ENERGY TRANSFER FOR IMPROVED DETECTION OF CHANGES IN DN." Master's thesis, University of Central Florida, 2008. http://digital.library.ucf.edu/cdm/ref/collection/ETD/id/2871.

Full text
Abstract:
Discovering, screening, and associating changes in DNA sequence are important to a broad range of disciplines and play a central role in Forensic Science. The typical types of changes include sequence variations [single nucleotide polymorphisms (SNP)] and length variations [short tandem repeats (STR)]. The steps for forensic DNA sample processing are similar for both types of changes but diverge at the point of detection. A number of approaches are being explored for SNP genotyping while STR analysis primarily consists of size-based analysis by capillary electrophoresis. Limitations exist for all current detection methods that pose significant impacts to forensic analysis. Bi-allelic SNPs result in three possible genotypes with a minimal amount of information generated per marker. Limitations for SNP analysis are due to the inability to amplify a suitable number of SNP markers from low DNA content samples to provide an appropriate level of discrimination. Multi-allelic STR markers are currently the marker of choice for forensic typing but a variety of experimental artifacts are possible that consist of either biology or technology related causes. Molecular genotyping methods developed across other disciplines have potential to alleviate some of these shortcomings but no current approach is capable of genotyping both SNP and STR loci with a single chemistry. The need for a more effective, efficient, and generalized approach led to development of a unique method called Dye Probe Fluorescence Resonance Energy Transfer (dpFRET) and determination of its suitability for forensic analysis. The development phase of the research consisted of synthetic testing to establish proof of concept for the chemistry followed by polymerase chain reaction (PCR) based assays to demonstrate real world applications. Following successful development, the boundaries and limitations for the technology were established (sensitivity, allelic dropout, mixed samples) and efforts were made to improve the approach. In the process, parallel testing for other fields including molecular pathology and conservation biology were incorporated to explore potential widespread application of this new approach. The overall goal of this project was to develop and explore the limitations for a unique approach to genotyping both SNPs and STRs. A majority of the work involved development of the method itself with the ultimate objective of application for forensic science. The focus of this project was to address and alleviate some of the shortcomings of current approaches that result in potential limitations for forensic analysis. It is expected that future applications of this technology might impact a wide range of disciplines to aid in discovery, screening and association of changes in DNA sequence.
M.S.
Department of Chemistry
Sciences
Forensic Science MS
APA, Harvard, Vancouver, ISO, and other styles
6

Soliai, Marcus Makina. "De novo Genome Assembly and SNP Marker Development of Pyrenophora semeniperda." BYU ScholarsArchive, 2011. https://scholarsarchive.byu.edu/etd/2960.

Full text
Abstract:
Pyrenophora semeniperda (anamorph Drechslera campulata) is a necrotrophic fungal seed pathogen of a variety of grass genra and species, including Bromus tectorum, an exotic grass that has invaded many natural ecosystems of the U.S. Intermountain West. As a natural seed pathogen of B. tectorum, P. semeniperda has potential as a biocontrol agent due to its effectiveness at killing dormant B. tectorum seeds; however, few genetic resources exist for this fungus. Here, the genome assembly of a P. semeniperda isolate using 454 GS-FLX genomic and paired-end pyrosequencing techniques is presented. The total assembly is 32.5 Mb and contains 11,453 gene models greater than 24 amino acids. The assembly contains a variety of predicted genes that are involved in pathogenic pathways typically found in necrotrophic fungi. In addition, 454 sequence reads were used to identify single nucleotide polymorphisms between two isolates of P. semeniperda. In total, 20 SNP markers were developed for the purposes of recombination assesment of 600 individual P. semeniperda isolates representing 36 populations from throughout the U.S. Intermountain West. Although 17 of the fungal populations were fixed at all SNP loci, linkage disequilibrium was determined in the remaining 18 populations. This research demonstrates the effectiveness of the 454 GS-FLX sequencing technology, for de novo assembly and marker development of filamentous fungal genomes. Many features of the assembly match those of other Pyrenophora genomes including P. tritici-repentis and P. teres f. teres, which lend validity to our assembly. These findings present a significant resource for examining and furthering our understanding of P. semeniperda biology.
APA, Harvard, Vancouver, ISO, and other styles
7

Rosén, Annie. "Development of pharmacogenetic tests and improvement of autosomal ancestry DNA test." Thesis, Linköpings universitet, Institutionen för klinisk och experimentell medicin, 2010. http://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-57977.

Full text
Abstract:
This master thesis was performed at the personal genomics company DNA-Guide Europa AB. The goal was to create DNA tests for drug response and to update the already existing DNA test for autosomal ancestry. The DNA tests for drug response: The objective of this part of the master thesis was to create individual DNA test for response to each drug within different groups of medicines. The tests were meant to interest private customers. DNA-Guide uses a microarray technique for the DNA-analysis and this delimited the choice of SNPs. Inserts, deletions, repeats and copies of a whole gene can be difficult to implement on the microarray chip. The SNPs and studies used as a base for the tests had to fulfil several criteria. The studies must be large enough to prove that the association between the genotype and the response to the drug is valid among Europeans, since it’s the clientele of the company. The found association must also be strong enough to be of interest for a DNA test at DNA-Guide. If the SNPs could be implemented on the microarray chip a customer report was created about the possible results. The report had the same structure and design as those for the existing DNA tests at DNA-Guide. The work resulted in DNA tests and reports for medicines within the seven groups of medicines; anticoagulants, medicine against high cholesterol, blood pressure lowering medicine, asthma inhalers, antidepressants, birth-control pills and antiretroviral drugs. The DNA test for autosomal ancestry: The purpose of the update was to enhance to customers understanding of their results and the construction of the test. The update resulted in a description of how the used algorithm processes the results (from the DNA analysis) and a guide to interpret the results of the test. Conclusions: Both the DNA tests for drug response and the updated DNA test for autosomal ancestry can add value for the customers at DNA-Guide. The DNA tests for drug response can offer an explanation to why a medicine does not have an effect or reveal if the customer has higher risk of adverse effects. Even though recommendations for dosage or treatment could not be provided in almost all of the created DNA tests, being aware of the higher risk can be the first step to avoid adverse effects. The update of the DNA test report for autosomal ancestry resulted in a better description of the algorithm and limitations of the test, which can enhance the customers’ understanding of their results.
APA, Harvard, Vancouver, ISO, and other styles
8

Krampe, Matthew Stephen. "Development of Single Nucleotide Polymorphism (SNP) Markers for Rapid, Inexpensive, and Standardized Identification of Pallid (Scaphirhynchus albus) and Shovelnose (S. platorynchus) Sturgeon Larvae." OpenSIUC, 2011. https://opensiuc.lib.siu.edu/theses/675.

Full text
Abstract:
The purpose of this project was to develop inexpensive, standardized, and high throughput Single Nucleotide Polymorphism (SNP) markers that discriminate between pallid (Scaphirhynchus albus) and shovelnose (S. platorynchus) sturgeon for use as a larval identification tool. A total of 67 polymorphic sites was identified in DNA sequences from three genes: Recombination Activating Gene-1, Beta Actin, and Beta-2-Microglobulin. Allele frequencies from the 10 most variable SNPs were characterized for both pallid and shovelnose sturgeon in three geographically separated populations throughout the range of the pallid sturgeon. To create a standardized method of genotyping SNPs for larval pallid and shovelnose sturgeon, 5' nuclease allelic discrimination (TaqMan) assays were designed for two unlinked SNPs that exhibited the greatest allele frequency differences between species. A power analysis compared these SNP loci and their diagnostic power for species discrimination compared to sixteen microsatellite loci currently used for species discrimination (Schrey et al. 2007) One SNP locus was the most powerful marker for species identification in the upper and middle Missouri River. This study provides practical genetic tools for species discrimination between pallid and shovelnose that will facilitate understanding addressing questions that were previously too costly, labor intensive or technically challenging to answer.
APA, Harvard, Vancouver, ISO, and other styles
9

Misyak, Sarah A. "Development of a SNP Assay for the Differentiation of Allelic Variations in the mdx Dystrophic Mouse Model." Thesis, Virginia Tech, 2008. http://hdl.handle.net/10919/32325.

Full text
Abstract:
The purpose of this study was to develop a SNaPshot® assay to simultaneously discriminate between the dystrophic and wild type (wt) alleles in mdx mice. The mdx mouse is an animal model for Duchenne muscular dystrophy (DMD), a severe and fatal muscle wasting disease. To evaluate possible treatments and to carry out genetic studies, it is essential to distinguish between mice that carry the mutant dystrophic or wt allele(s). The current Amplification-Resistant Mutation System (ARMS) assay used to genotype mdx mice is labor intensive and sometimes fails to yield typing results, which reduce its efficiency as a screening tool. An alternative assay based on single nucleotide polymorphism (SNP) extension technology (i.e., SNaPshot®) would be advantageous because its specificity and capability to be automated would reduce the labor involved and increase the fidelity of each assay. A SNaPshot® assay has been developed that provides a robust and potentially automatable assay that discriminates between the wt and dystrophic alleles. The assay has been optimized to use: an undiluted DNA in the PCR, a 0.1 µM PCR primer concentration, a full PCR product for the SNP extension reaction, a 50ºC annealing temperature for the SNP extension in accordance with standard SNaPshot® conditions, and a 0.4 µM concentration of the SNP extension primer. The advantages of the resultant SNaPshot® assay over the ARMS assay include higher fidelity, robustness, and more consistent performance within and among laboratories, and reduced risk of human error.
Master of Science
APA, Harvard, Vancouver, ISO, and other styles
10

Groß, Theresa Elisa [Verfasser]. "Development of novel SNP panels for the application of massively parallel sequencing to forensic genetics / Theresa Elisa Groß." Köln : Deutsche Zentralbibliothek für Medizin, 2017. http://d-nb.info/1144184878/34.

Full text
APA, Harvard, Vancouver, ISO, and other styles
More sources

Books on the topic "SNP development"

1

Haseman, William D. Mobile development for SAP. Bonn: Galileo Press, 2013.

Find full text
APA, Harvard, Vancouver, ISO, and other styles
2

SAP fiori implementation and development. Bonn: Rheinwerk Pub., 2015.

Find full text
APA, Harvard, Vancouver, ISO, and other styles
3

SAP certified development associate--ABAP with SAP NetWeaver 7.4. 3rd ed. Bonn: Rheinwerk Pub., 2015.

Find full text
APA, Harvard, Vancouver, ISO, and other styles
4

Asthana, Puneet. SAP certified development associate--ABAP with SAP NetWeaver 7.02. 2nd ed. Bonn: Galileo Press, 2012.

Find full text
APA, Harvard, Vancouver, ISO, and other styles
5

Panītō, Subin. Satčha sasom sap: Sasom thun sangkhom. 3rd ed. Krung Thēp Mahā Nakhō̜n: Sathāban Chumchon Thō̜ngthin Phatthanā, 1998.

Find full text
APA, Harvard, Vancouver, ISO, and other styles
6

SAP business bydesign studio: Application development. Boston: Galileo Press, 2012.

Find full text
APA, Harvard, Vancouver, ISO, and other styles
7

Werner, Ilja-Daniel. ABAP development for SAP business workflow. Bonn: Galileo Press, 2012.

Find full text
APA, Harvard, Vancouver, ISO, and other styles
8

Jeffrey, Word, ed. SAP NetWeaver for dummies. Hoboken, NJ: Wiley, 2004.

Find full text
APA, Harvard, Vancouver, ISO, and other styles
9

SNH research and development strategy, 2007-2012. Perth: SNH, 2007.

Find full text
APA, Harvard, Vancouver, ISO, and other styles
10

Maisel, Sabine. Practical guide to IDoc development for SAP. Bonn: Galileo Press, 2010.

Find full text
APA, Harvard, Vancouver, ISO, and other styles
More sources

Book chapters on the topic "SNP development"

1

Szuhai, Karoly. "Array-CGH and SNP-Arrays, the New Karyotype." In Microarrays in Diagnostics and Biomarker Development, 39–52. Berlin, Heidelberg: Springer Berlin Heidelberg, 2012. http://dx.doi.org/10.1007/978-3-662-45800-6_5.

Full text
APA, Harvard, Vancouver, ISO, and other styles
2

Liu, Shikai, Qifan Zeng, Xiaozhu Wang, and Zhanjiang Liu. "SNP Array Development, Genotyping, Data Analysis, and Applications." In Bioinformatics in Aquaculture, 308–37. Chichester, UK: John Wiley & Sons, Ltd, 2017. http://dx.doi.org/10.1002/9781118782392.ch18.

Full text
APA, Harvard, Vancouver, ISO, and other styles
3

Ruttink, T., L. Sterck, E. Vermeulen, A. Rohde, and I. Roldán-Ruiz. "Development of an SNP Identification Pipeline for Highly Heterozygous Crops." In Breeding strategies for sustainable forage and turf grass improvement, 131–39. Dordrecht: Springer Netherlands, 2012. http://dx.doi.org/10.1007/978-94-007-4555-1_16.

Full text
APA, Harvard, Vancouver, ISO, and other styles
4

McCue, Molly, and Jim Mickelson. "Genomic Tools and Resources: Development and Applications of an Equine SNP Genotyping Array." In Equine Genomics, 113–24. Oxford, UK: Blackwell Publishing Ltd., 2013. http://dx.doi.org/10.1002/9781118522158.ch7.

Full text
APA, Harvard, Vancouver, ISO, and other styles
5

Isobe, S., B. Boller, I. Klimenko, S. Kölliker, J. C. Rana, T. R. Sharma, K. Shirasawa, H. Hirakawa, S. Sato, and S. Tabata. "Genome-Wide SNP Marker Development and QTL Identification for Genomic Selection in Red Clover." In Breeding strategies for sustainable forage and turf grass improvement, 29–36. Dordrecht: Springer Netherlands, 2012. http://dx.doi.org/10.1007/978-94-007-4555-1_3.

Full text
APA, Harvard, Vancouver, ISO, and other styles
6

Sretenovic Rajicic, Tatjana, Thomas Lübberstedt, Louise Bach Jensen, Uwe Scholz, W. Eberhard Weber, Andreas Graner, and Klaus J. Dehmer. "Single Nucleotide Polymorphism (SNP) Markers for Allele Quantification in Lolium (Poaceae): Development and First Applications." In Molecular Breeding of Forage and Turf, 143–63. Cham: Springer International Publishing, 2015. http://dx.doi.org/10.1007/978-3-319-08714-6_13.

Full text
APA, Harvard, Vancouver, ISO, and other styles
7

Nhan, B. T., N. T. T. Lan, N. T. N. Thanh, T. V. Thiep, and N. T. Hue. "Primary Study of SNP rs2046210 in Vietnamese Breast Cancer Population by High-Resolution Melting Analysis (HRMA)." In 6th International Conference on the Development of Biomedical Engineering in Vietnam (BME6), 229–34. Singapore: Springer Singapore, 2017. http://dx.doi.org/10.1007/978-981-10-4361-1_38.

Full text
APA, Harvard, Vancouver, ISO, and other styles
8

Nguyen, Uyen Hong Thi, Thanh Ngoc Thi Nguyen, Thiep Van Tran, and Hue Thi Nguyen. "High Resolution Melting (HRM) Optimization for Genotyping the SNP Rs3746444/Mir-499 in Vietnamese Breast Cancer Patients." In 6th International Conference on the Development of Biomedical Engineering in Vietnam (BME6), 171–76. Singapore: Springer Singapore, 2017. http://dx.doi.org/10.1007/978-981-10-4361-1_29.

Full text
APA, Harvard, Vancouver, ISO, and other styles
9

Traynor, Susan, Michael A. Wellens, and Venki Krishnamoorthy. "Development Plans." In SAP SuccessFactors Talent: Volume 2, 1–86. Berkeley, CA: Apress, 2021. http://dx.doi.org/10.1007/978-1-4842-6995-4_1.

Full text
APA, Harvard, Vancouver, ISO, and other styles
10

Zaidi, Rehan. "ABAP Unit Test-Driven Development." In SAP ABAP Objects, 215–37. Berkeley, CA: Apress, 2019. http://dx.doi.org/10.1007/978-1-4842-4964-2_7.

Full text
APA, Harvard, Vancouver, ISO, and other styles

Conference papers on the topic "SNP development"

1

Eujayl, Imad A., and Carl A. Strausbaugh. "WHOLE GENOME SEQUENCING OF SUGARBEET AND DEVELOPMENT OF PUBLIC SNP GENOTYPING PLATFORM." In 37th Biennial Meeting of American Society of Sugarbeet Technologist. ASSBT, 2013. http://dx.doi.org/10.5274/assbt.2013.24.

Full text
APA, Harvard, Vancouver, ISO, and other styles
2

Neri, Bruce P., R. Ganske, W. Isaczyszyn, and Edward L. Beaty. "Transferring automation for large-scale development and production of Invader SNP assays." In BiOS 2000 The International Symposium on Biomedical Optics, edited by Patrick A. Limbach, John C. Owicki, Ramesh Raghavachari, and Weihong Tan. SPIE, 2000. http://dx.doi.org/10.1117/12.380503.

Full text
APA, Harvard, Vancouver, ISO, and other styles
3

Kayumov, Foat, Vladimir Kosilov, Nikolay Gerasimov, and Olga Bykova. "The effect of SNP polymorphisms in growth hormone gene on weight and linear growth in crossbred Red Angus × Kalmyk heifers." In Proceedings of the International Scientific and Practical Conference “Digital agriculture - development strategy” (ISPC 2019). Paris, France: Atlantis Press, 2019. http://dx.doi.org/10.2991/ispc-19.2019.73.

Full text
APA, Harvard, Vancouver, ISO, and other styles
4

Niu, Baohua, Grace Mei Ee Khoo, Yuan-Chuan Steven Chen, Fernando Chapman, Dan Bockelman, and Tom Tong. "Laser Logic State Imaging (LLSI)." In ISTFA 2014. ASM International, 2014. http://dx.doi.org/10.31399/asm.cp.istfa2014p0065.

Full text
Abstract:
Abstract Logic State Imaging (LSI) using Infra-Red Emission Microscopy (IREM) [1-4] has been an indispensable technology for silicon CMOS process development and product debug applications. Its main limitations are relatively poor spatial resolution due to the broadband near-infrared photons emitted, and poor Signal to Noise Ratio (SNR) with low voltage and low leakage processes and products. Continuous-Wave Laser Scanning Microscope (CW-LSM) based Signal Imaging and Probing (CW-SIP) [5-9] technology is also widely used. It features inherently better spatial resolution than IREM, due to the use of monochromatic 1319nm or 1064nm laser light, and high SNR due to its weaker dependence on voltage and leakage, and, for signal imaging applications, the use of narrow band detection to reduce noise. However, CW-SIP can only detect modulating signals, so it couldn’t previously be applied to LSI. In this paper, we introduce an innovative approach that overcomes this limitation to enable Laser Logic State Imaging (LLSI). Actual fault isolation and design debug cases using this technology are presented to show its advantages in terms of resolution (>50% better), SNR (>2X better) and throughput time improvement, especially at low voltages (down to 500mV).
APA, Harvard, Vancouver, ISO, and other styles
5

Ikuo, Akira, Yuki Toyama, Yusuke Yoshinaga, and Haruo Ogawa. "Development of Electronic Lab-book for College Chemistry-Experiment - SN1 & SN2 Reactions -." In 9th International Conference on Computer Supported Education. SCITEPRESS - Science and Technology Publications, 2017. http://dx.doi.org/10.5220/0006381305560561.

Full text
APA, Harvard, Vancouver, ISO, and other styles
6

ARIVA, Jelena, Katri KALL, Liis OPER, and Ants-Hannes VIIRA. "EFFECTS OF THE RESTRICTIONS OF PRACTICES USED FOR THE MAINTENANCE OF PERMANENT GRASSLANDS." In RURAL DEVELOPMENT. Aleksandras Stulginskis University, 2018. http://dx.doi.org/10.15544/rd.2017.163.

Full text
Abstract:
From 2004-2015, the utilised agricultural area (UAA) in Estonia increased by 25%. Half of the UAA growth arose from the increase in the area of permanent grassland temporarily not used for production purposes. The main driver of growth in such land has been single area payment (SAP) paid in Estonia since the EU accession in 2004. While subsidising the maintenance of permanent grassland not used for agricultural production is in line with the objectives of the EU Common Agricultural Policy (CAP), it fuels discussions about the effects of this policy on agricultural producers. For every year, member states establish practices equivalent to maintenance of permanent grassland. Until 2014, in Estonia, the minimum activity for the maintenance of permanent grassland under the SAP, was harvesting the grass or chopping it and leaving on the ground. In 2015 and 2016 options for chopping and leaving the grass on the ground were restricted with an aim to target SAP more towards active land users, i.e. agricultural producers. Both agricultural producers and non-producers maintain permanent grassland not used for production purposes. Research on the practices used by different types of actors helps in understanding the variety of practices and potential effects of restrictions of these practices. The survey data was combined with the data from the registries of Estonian Agricultural Registers and Information Board (ARIB), to analyse the potential effects of restrictions of practices on agricultural producers and the area of permanent pasture in Estonia. The results indicate that both agricultural producers and non-producers use grass harvesting and chopping practices. Therefore, restrictions that have effect on both groups of land users are not the most efficient way of targeting SAP towards agricultural producers, and potentially reduce the area of permanent grasslands. This result would be in conflict with the aims of the CAP.
APA, Harvard, Vancouver, ISO, and other styles
7

Yen, N. T. H., K. Sunda, S. Oishi, and K. Ikejima. "Tonle Sap ecosystem water quality index development and fish production." In SUSTAINABLE DEVELOPMENT 2007. Southampton, UK: WIT Press, 2007. http://dx.doi.org/10.2495/sdp070862.

Full text
APA, Harvard, Vancouver, ISO, and other styles
8

Buse, Raymond P. L., and Thomas Zimmermann. "Analytics for software development." In the FSE/SDP workshop. New York, New York, USA: ACM Press, 2010. http://dx.doi.org/10.1145/1882362.1882379.

Full text
APA, Harvard, Vancouver, ISO, and other styles
9

Sullivan, Kevin. "Opportunity-centered software development." In the FSE/SDP workshop. New York, New York, USA: ACM Press, 2010. http://dx.doi.org/10.1145/1882362.1882437.

Full text
APA, Harvard, Vancouver, ISO, and other styles
10

Bebek, Christopher, Carl W. Akerlof, Greg Aldering, R. Amanullah, Pierre Astier, Charles Baltay, E. Barrelet, et al. "SNAP satellite focal plane development." In Optical Science and Technology, SPIE's 48th Annual Meeting, edited by Oswald H. W. Siegmund. SPIE, 2003. http://dx.doi.org/10.1117/12.505232.

Full text
APA, Harvard, Vancouver, ISO, and other styles

Reports on the topic "SNP development"

1

Jackson, Paul J., and Karen K. Hill. Forensic assays of ricin: development of snp assays to generate precise genetic signatures for mixed genotypes found in ricin preparations. Office of Scientific and Technical Information (OSTI), November 2009. http://dx.doi.org/10.2172/1127183.

Full text
APA, Harvard, Vancouver, ISO, and other styles
2

Johnson, Eric M., and Robert Chew. Social Network Analysis Methods for International Development. RTI Press, May 2021. http://dx.doi.org/10.3768/rtipress.2021.rb.0026.2105.

Full text
Abstract:
Social Network Analysis (SNA) is a promising yet underutilized tool in the international development field. SNA entails collecting and analyzing data to characterize and visualize social networks, where nodes represent network members and edges connecting nodes represent relationships or exchanges among them. SNA can help both researchers and practitioners understand the social, political, and economic relational dynamics at the heart of international development programming. It can inform program design, monitoring, and evaluation to answer questions related to where people get information; with whom goods and services are exchanged; who people value, trust, or respect; who has power and influence and who is excluded; and how these dynamics change over time. This brief advances the case for use of SNA in international development, outlines general approaches, and discusses two recently conducted case studies that illustrate its potential. It concludes with recommendations for how to increase SNA use in international development.
APA, Harvard, Vancouver, ISO, and other styles
3

Lavadenz, Magaly, Elvira Armas, and Rosalinda Barajas. Preventing Long-Term English Learners: Results from a Project-Based Differentiated ELD Intervention Program. CEEL, 2012. http://dx.doi.org/10.15365/ceel.article.2012.1.

Full text
Abstract:
<p>In this article the authors describe efforts taken by a small southern California school district to develop and implement an innovative, research-based English Language Development program to address a growing concern over long-term English Learners (LTELs) in their district. With support from the Weingart Foundation this afterschool program served 3<sup>rd</sup> and 7<sup>th</sup> grade LTELs between 2008–2011 to accelerate language and literacy acquisition and prevent prolonged EL status. Program evaluation results indicated that the intervention was associated with improved English language proficiency as measured by the California English Language Development Test. Results also showed a heightened awareness of effective practices for LTELs among the district’s teachers and high levels of satisfaction among the participants’ parents. This intervention program has implications for classroom-based intervention including project-based learning for LTELs, for targeted professional development, and for further research for the prevention of LTEL status.</p>
APA, Harvard, Vancouver, ISO, and other styles
4

Brau, James. Final Report - Sensor Development for Future e+e- Colliders. Office of Scientific and Technical Information (OSTI), October 2018. http://dx.doi.org/10.2172/1477882.

Full text
APA, Harvard, Vancouver, ISO, and other styles
5

Kirka, Michael M., Kinga A. Unocic, Keith Kruger, and Alison Forsythe. Process Development for Haynes® 282® Using Additive Manufacturing. Office of Scientific and Technical Information (OSTI), March 2018. http://dx.doi.org/10.2172/1435227.

Full text
APA, Harvard, Vancouver, ISO, and other styles
6

Milner, Richard G. Development of a Polarized 3He Ion Source for RHIC. Office of Scientific and Technical Information (OSTI), January 2019. http://dx.doi.org/10.2172/1492421.

Full text
APA, Harvard, Vancouver, ISO, and other styles
7

Menlove, Howard Olsen, and Daniela Henzlova. High-Dose Neutron Detector Development Using 10B Coated Cells. Office of Scientific and Technical Information (OSTI), November 2016. http://dx.doi.org/10.2172/1331305.

Full text
APA, Harvard, Vancouver, ISO, and other styles
8

Graff, E. W., and W. B. Chambers. SNL/NM weapon hardware characterization process development report. Office of Scientific and Technical Information (OSTI), January 1995. http://dx.doi.org/10.2172/10123143.

Full text
APA, Harvard, Vancouver, ISO, and other styles
9

Spencer, Khalil J., Floyd E. Stanley, Donivan R. Porterfield, and Alonso Castro. Analytical Chemistry Developmental Work Using a 243Am Solution. Office of Scientific and Technical Information (OSTI), February 2015. http://dx.doi.org/10.2172/1170710.

Full text
APA, Harvard, Vancouver, ISO, and other styles
10

Pajunen, A. L. Development of design basis capacity for SNF project systems. Office of Scientific and Technical Information (OSTI), February 1996. http://dx.doi.org/10.2172/483391.

Full text
APA, Harvard, Vancouver, ISO, and other styles
You might also be interested in the extended bibliographies on the topic 'SNP development' for particular source types:
Journal articles Dissertations / Theses Books
We offer discounts on all premium plans for authors whose works are included in thematic literature selections. Contact us to get a unique promo code!

To the bibliography