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Journal articles on the topic 'Status sequence'

Author: Grafiati

Published: 2 June 2025

Last updated: 31 July 2025

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1

Nacul Mora, Nabila Gala, Burak Han Akkurt, Dilek Kasap, et al. "Comparison of MRI Sequences to Predict ATRX Status Using Radiomics-Based Machine Learning." Diagnostics 13, no. 13 (2023): 2216. http://dx.doi.org/10.3390/diagnostics13132216.

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ATRX is an important molecular marker according to the 2021 WHO classification of adult-type diffuse glioma. We aim to predict the ATRX mutation status non-invasively using radiomics-based machine learning models on MRI and to determine which MRI sequence is best suited for this purpose. In this retrospective study, we used MRI images of patients with histologically confirmed glioma, including the sequences T1w without and with the administration of contrast agent, T2w, and the FLAIR. Radiomics features were extracted from the corresponding MRI images by hand-delineated regions of interest. Da

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Summerbell, R. C., R. A. Haugland, A. Li, and A. K. Gupta. "rRNA Gene Internal Transcribed Spacer 1 and 2 Sequences of Asexual, Anthropophilic Dermatophytes Related toTrichophyton rubrum." Journal of Clinical Microbiology 37, no. 12 (1999): 4005–11. http://dx.doi.org/10.1128/jcm.37.12.4005-4011.1999.

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The ribosomal region spanning the two internal transcribed spacer (ITS) regions and the 5.8S ribosomal DNA region was sequenced for asexual, anthropophilic dermatophyte species with morphological similarity to Trichophyton rubrum, as well as for members of the three previously delineated, related major clades in theT. mentagrophytes complex. Representative isolates ofT. raubitschekii, T. fischeri, and T. kanei were found to have ITS sequences identical to that ofT. rubrum. The ITS sequences of T. soudanenseand T. megninii differed from that of T. rubrumby only a small number of base pairs. The

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Roslim, Dewi Indriyani, Siti Khumairoh, and Herman Herman. "Confirmation of Tuntun Angin (Elaeocarpus floribundus) Taxonomic Status Using matK and ITS Sequences." Biosaintifika: Journal of Biology & Biology Education 8, no. 3 (2016): 393. http://dx.doi.org/10.15294/biosaintifika.v8i3.7406.

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<p>Tuntun angin is one of important floodplain plants in and around Kajuik Lake located in Riau Province, Indonesia. Morphological identification shows that the scientific name of this plant is <em>Elaeocarpus floribundus. </em>The study aimed to confirm the taxonomic status of tuntun angin using <em>matK</em> and nuclear intergenic spacer (ITS) sequences. The methods included fresh leaf DNA isolation, polymerase chain reaction, electrophoresis, sequencing, and data analysis using BLASTn program and MEGA software version 6.06 programs. The results showed that the

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Austin, Rita M., Pia Merete Eriksen, and Lutz Bachmann. "Complete mitochondrial genome of the Galápagos sea lion, Zalophus wollebaeki (Carnivora, Otariidae): paratype specimen confirms separate species status." ZooKeys 1166 (June 13, 2023): 307–13. http://dx.doi.org/10.3897/zookeys.1166.103247.

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The endangered Galápagos sea lion (Zalophus wollebaeki) inhabits the Galápagos Islands off the coast of Ecuador. We present a complete mitochondrial genome (16 465 bp) of a female paratype from the collections of the Natural History Museum Oslo, Norway, assembled from next-generation sequencing reads. It contains all canonical protein-coding, rRNA, tRNA genes, and the D-loop region. Sequence similarity is 99.93% to a previously published conspecific mitogenome sequence and 99.37% to the mitogenome sequence of the sister species Z. californianus. Sequence similarity of the D-loop region of the

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Austin, Rita M., Pia Merete Eriksen, and Lutz Bachmann. "Complete mitochondrial genome of the Galápagos sea lion, Zalophus wollebaeki (Carnivora, Otariidae): paratype specimen confirms separate species status." ZooKeys 1166 (June 13, 2023): 307–13. https://doi.org/10.3897/zookeys.1166.103247.

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The endangered Galápagos sea lion (Zalophus wollebaeki) inhabits the Galápagos Islands off the coast of Ecuador. We present a complete mitochondrial genome (16 465 bp) of a female paratype from the collections of the Natural History Museum Oslo, Norway, assembled from next-generation sequencing reads. It contains all canonical protein-coding, rRNA, tRNA genes, and the D-loop region. Sequence similarity is 99.93% to a previously published conspecific mitogenome sequence and 99.37% to the mitogenome sequence of the sister species Z. californianus. Sequence similarity of the D-loop region of the

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Klimentov, A. S., A. P. Gmyl, A. M. Butenko, et al. "Taxonomic status of Bhanja and Kismayo viruses (family Bunyaviridae)." Epidemiology and Infectious Diseases 17, no. 4 (2012): 4–8. http://dx.doi.org/10.17816/eid40625.

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The nucleotide sequence of M= (1398 nucleotides and L= (6186 nucleotides) segments of the genome of Bhanja virus and L-segment (1297 nucleotides) of Kismayo virus has been partially determined. Phylogenetic analysis of deduced amino acid sequences showed that these viruses are novel members of the Flebovirus (Phlebovirus) genus in the family Bunyaviridae

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PARK, Jongsun, Yunho YUN, Hong XI, Woochan KWON, and Janghyuk SON. "Current status of whole-genome sequences of Korean angiosperms." Korean Journal of Plant Taxonomy 53, no. 3 (2023): 181–200. http://dx.doi.org/10.11110/kjpt.2023.53.3.181.

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Owing to the rapid development of sequencing technologies, more than 1,000 plant genomes have been sequenced and released. Among them, 69 Korean plant taxa (85 genome sequences) contain at least one whole-genome sequence despite the fact that some samples were not collected in Korea. The sequencing-by-synthesis method (next-generation sequencing) and the PacBio (third-generation sequencing) method were the most commonly used in studies appearing in 65 publications. Several scaffolding methods, such as the Hi-C and 10x types, have also been used for pseudo-chromosomal assembly. The most abundan

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Kida, Sayuri, Norio Aoyama, Toshiya Fujii, et al. "Influence of Meal Sequence and Number of Teeth Present on Nutrient Intake Status: A Cross-Sectional Study." Nutrients 15, no. 11 (2023): 2602. http://dx.doi.org/10.3390/nu15112602.

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Intake of fiber, as well as protein, and lipid preloading help to control postprandial glycemic elevation in people with type 2 diabetes and in healthy individuals. However, there are few studies on the awareness of meal sequence and nutrient intake status that consider oral conditions. This cross-sectional study aimed to determine the effects of meal sequences on nutrient intake status and whether these relationships were related to the number of teeth present. The subjects were recruited from the Medical and Dental Collaboration Center of Kanagawa Dental University Hospital between 2018 and

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Rogers, Jane, and Allan Bradley. "The Mouse Genome Sequence: Status and Prospects." Genomics 77, no. 3 (2001): 117–18. http://dx.doi.org/10.1006/geno.2001.6637.

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Kasap, Dilek N. G., Nabila Gala Nacul Mora, David A. Blömer, et al. "Comparison of MRI Sequences to Predict IDH Mutation Status in Gliomas Using Radiomics-Based Machine Learning." Biomedicines 12, no. 4 (2024): 725. http://dx.doi.org/10.3390/biomedicines12040725.

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Objectives: Regarding the 2021 World Health Organization (WHO) classification of central nervous system (CNS) tumors, the isocitrate dehydrogenase (IDH) mutation status is one of the most important factors for CNS tumor classification. The aim of our study is to analyze which of the commonly used magnetic resonance imaging (MRI) sequences is best suited to obtain this information non-invasively using radiomics-based machine learning models. We developed machine learning models based on different MRI sequences and determined which of the MRI sequences analyzed yields the highest discriminatory

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Tang, Qi, Guoli Ma, Weiming Zhang, and Nenghai Yu. "Reversible Data Hiding for DNA Sequences and Its Applications." International Journal of Digital Crime and Forensics 6, no. 4 (2014): 1–13. http://dx.doi.org/10.4018/ijdcf.2014100101.

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As the blueprint of vital activities of most living things on earth, DNA has important status and must be protected perfectly. And in current DNA databases, each sequence is stored with several notes that help to describe that sequence. However, these notes have no contribution to the protection of sequences. In this paper, the authors propose a reversible data hiding method for DNA sequences, which could be used either to embed sequence-related annotations, or to detect and restore tampers. When embedding sequence annotations, the methods works in low embedding rate mode. Only several bits of

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Bergman, Casey M., and Penelope R. Haddrill. "Strain-specific and pooled genome sequences for populations of Drosophila melanogaster from three continents." F1000Research 4 (January 29, 2015): 31. http://dx.doi.org/10.12688/f1000research.6090.1.

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To contribute to our general understanding of the evolutionary forces that shape variation in genome sequences in nature, we have sequenced genomes from 50 isofemale lines and six pooled samples from populations of Drosophila melanogaster on three continents. Analysis of raw and reference-mapped reads indicates the quality of these genomic sequence data is very high. Comparison of the predicted and experimentally-determined Wolbachia infection status of these samples suggests that strain or sample swaps are unlikely to have occurred in the generation of these data. Genome sequences are freely

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BLACKWELL, J. M., and S. E. MELVILLE. "Status of protozoan genome analysis: trypanosomatids." Parasitology 118, no. 7 (1999): 11–14. http://dx.doi.org/10.1017/s0031182099004163.

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The three trypanosomatid genome projects have employed common strategies which include: analysis of pulsed-field gel electrophoretic chromosomal karyotypes; physical mapping using big DNA (cosmid, pacmid P1, bacterial artificial chromosome, yeast artificial chromosome) libraries; partial cDNA sequence analysis to develop sets of expressed sequence tags (ESTs) for gene discovery and use as markers in physical mapping; genomic sequencing; dissemination of information through development of web-sites and ACeDB-based fully integrated databases; and establishment of functional genomics programmes t

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Ruiz, Carlos, Diego Cejas, Irene Muñoz, and Pilar De la Rua. "Characterizing the Mitogenome of the Endemic Bumblebee Subspecies from the Canary Islands for Conservation Purposes." Sociobiology 68, no. 3 (2021): e5910. http://dx.doi.org/10.13102/sociobiology.v68i3.5910.

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The taxonomic status of Bombus terrestris subspecies is complex and has deep implications in the management of commercial bumblebees for crop pollination as well as in the establishment of appropriate conservation plans. Herein, the complete mitogenome of the endemic Canary Islands subspecies Bombus terrestris canariensis is newly sequenced and compared with available mitochondrial sequences in order to shed light into its taxonomic status. The mitochondrial genome was 17,300 bp in length and contained 37 genes, including 13 protein-coding genes (PCGs), two rRNAs, and 22 tRNAs and a partial se

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Pike, Aiden M. C., Saeed Amal, Melissa S. Maginnis, and Michael P. Wilczek. "Evaluating Neural Network Performance in Predicting Disease Status and Tissue Source of JC Polyomavirus from Patient Isolates Based on the Hypervariable Region of the Viral Genome." Viruses 17, no. 1 (2024): 12. https://doi.org/10.3390/v17010012.

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JC polyomavirus (JCPyV) establishes a persistent, asymptomatic kidney infection in most of the population. However, JCPyV can reactivate in immunocompromised individuals and cause progressive multifocal leukoencephalopathy (PML), a fatal demyelinating disease with no approved treatment. Mutations in the hypervariable non-coding control region (NCCR) of the JCPyV genome have been linked to disease outcomes and neuropathogenesis, yet few metanalyses document these associations. Many online sequence entries, including those on NCBI databases, lack sufficient sample information, limiting large-sca

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Hickling, Anna, Birgit Brecknell, Robert G. Loeb, and Penelope Sanderson. "Using a Sequence of Earcons to Monitor Multiple Simulated Patients." Human Factors: The Journal of the Human Factors and Ergonomics Society 59, no. 2 (2016): 268–88. http://dx.doi.org/10.1177/0018720816670986.

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Objective: The aim of this study was to determine whether a sequence of earcons can effectively convey the status of multiple processes, such as the status of multiple patients in a clinical setting. Background: Clinicians often monitor multiple patients. An auditory display that intermittently conveys the status of multiple patients may help. Method: Nonclinician participants listened to sequences of 500-ms earcons that each represented the heart rate (HR) and oxygen saturation (SpO2) levels of a different simulated patient. In each sequence, one, two, or three patients had an abnormal level

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R. Shenoy, Sandhya, and B. Jayaram. "Proteins: Sequence to Structure and Function – Current Status." Current Protein & Peptide Science 11, no. 7 (2010): 498–514. http://dx.doi.org/10.2174/138920310794109094.

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Wang, Zhongqiu, Ying Chen, and Hai Wang. "Sequence-Based Indoor Localization with Channel Status Information." Sensors 18, no. 6 (2018): 1818. http://dx.doi.org/10.3390/s18061818.

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Pruitt, K. D. "NCBI Reference Sequence Project: update and current status." Nucleic Acids Research 31, no. 1 (2003): 34–37. http://dx.doi.org/10.1093/nar/gkg111.

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MARASCHI, L., G. GHISELLINI, F. TAVECCHIO, L. FOSCHINI, and R. M. SAMBRUNA. "THE SPECTRAL SEQUENCE OF BLAZARS — STATUS AND PERSPECTIVES." International Journal of Modern Physics D 17, no. 09 (2008): 1457–66. http://dx.doi.org/10.1142/s0218271808013030.

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The present status of the blazar spectral sequence is discussed, including new findings about blazars selected with different criteria than the original complete radio-samples. Despite extensive searches of blazars "breaking" the sequence, the original idea proposed 10 years ago still seems to hold. On the other hand, the forthcoming launch of the GLAST satellite will provide a new selection band for blazars and blazar related populations as well as fantastic progress on the spectra and variability behaviour of presently known blazars. The order of magnitude increase in sensitivity of GLAST wi

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NEERAJ KUMAR, A. S. NAIN, and SUMAN KUMAR. "Sequential simulation of wheat and urd using DSSAT model in mollisol of Uttrakhand." Journal of Agrometeorology 14, no. 2 (2012): 158–62. http://dx.doi.org/10.54386/jam.v14i2.1416.

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CERES wheat and CROPGRO urd model were used for sequential simulation to examine the stability of urd-wheat crop rotation as influenced by the interaction between environment and nutrient status. The results revealed that the CERES wheat and CROPGRO urd model satisfactorily simulated the growth and yield in sequential run. Therefore, the validated model can be further used for applications such as sequential study, crop growth, phenology, potential and actual yields etc. The effects of one crop on soil, water, and nutrient status are carried over to the next crop in the sequence or rotation. T

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SUNIL KUMAR and S. A. FARUQUI. "Economic viability and residual soil-nutrient status in chewing tobacco (Nicoti- ana tabacum)based cropping system." Indian Journal of Agronomy 53, no. 4 (2001): 290–94. http://dx.doi.org/10.59797/ija.v53i4.4875.

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A field experiment was conducted during 2002-03 to 2004-05 at Vedasandur, Tamil Nadu to study the economic viability of various chewing tobacco ( Nicotiana tabacum L.) based cropping systems and their effect on residual soil-nutrient status. The treatments consisted of six chewing tobacco-based cropping sequences, viz. r agi [ Eleusine coracana Gaertn]tobacco [ Nicotiana tabacum L.]sunflower [ Helianthus annuus L.]; sunnhemp [ Crotalaria juncea L.]tobaccosorghum fodder [ Sorghum bicolor L. Moench]; maize [ Zea mays L.]tobaccosun- flower; maizetobaccogroundnut [ Arachis hypogaea L. sunflowertob

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Soanes, Darren M., Wendy Skinner, John Keon, John Hargreaves, and Nicholas J. Talbot. "Genomics of Phytopathogenic Fungi and the Development of Bioinformatic Resources." Molecular Plant-Microbe Interactions® 15, no. 5 (2002): 421–27. http://dx.doi.org/10.1094/mpmi.2002.15.5.421.

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Genomic resources available to researchers studying phytopathogenic fungi are limited. Here, we briefly review the genomic and bioinformatic resources available and the current status of fungal genomics. We also describe a relational database containing sequences of expressed sequence tags (ESTs) from three phytopathogenic fungi, Blumeria graminis, Magnaporthe grisea, and Mycosphaerella graminicola, and the methods and underlying principles required for its construction. The database contains significant annotation for each EST sequence and is accessible at http://cogeme.ex.ac.uk . An easy-to-

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Shin, Serah, and Hyungsoo Kim. "Marital status, health, and retirement wealth for middle aged and older women." Financial Services Review 26, no. 3 (2023): 255–70. http://dx.doi.org/10.61190/fsr.v26i3.3322.

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We investigate the different impacts of health problems on wealth among unmarried and married women in their later years. We advance the literature by using a new health measure of a 22 year sequence of chronic diseases. Using data from 2,476 women age 50 or older from the 1992–2014 Health and Retirement Study, we find that unmarried women have more complicated and costly health sequences compared with married women, including multi-morbidity or co-morbidity. Over the 22 year period, retirement wealth for unmarried women with costly health sequences is reduced by approximately $3,600 to $5,400

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Fleischer, Robert C., Beth Slikas, Jon Beadell, Colm Atkins, Carl E. McINTOSH, and Sheila Conant. "Genetic Variability and Taxonomic Status of the Nihoa and Laysan Millerbirds." Condor 109, no. 4 (2007): 954–62. http://dx.doi.org/10.1093/condor/109.4.954.

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Abstract The Millerbird (Acrocephalus familiaris) is an endemic Northwestern Hawaiian Islands reed warbler that existed until about 1923 on Laysan Island (A. f. familiaris) and currently occurs in a small population on Nihoa Island (A. f. kingi). The two populations are described as separate subspecies or species on the basis of size and plumage differences. We assessed genetic variation in blood samples from 15 individuals in the modern Nihoa population using approximately 3000 base pairs (bp) of mitochondrial DNA (mtDNA) sequence and 14 microsatellite loci. We also obtained up to 1028 bp of

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Li, W., A. Van Soom, and L. Peelman. "Repeats as global DNA methylation marker in bovine preimplantation embryos." Czech Journal of Animal Science 62, No. 2 (2017): 43–50. http://dx.doi.org/10.17221/29/2016-cjas.

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DNA methylation undergoes dynamic changes and is a crucial part of the epigenetic regulation during mammalian early development. To determine the DNA methylation levels in bovine embryos, we applied a bisulfite sequencing based method aimed at repetitive sequences including three retrotransposons (L1_BT, BovB, and ERV1-1-I_BT) and Satellite I. A more accurate estimate of the global DNA methylation level compared to previous methods using only one repeat sequence, like Alu, could be made by calculation of the weighted arithmetic mean of multiple repetitive sequences, considering the copy number

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Nili, Marzyeh, Katayoon Tayeri, Mohamad Gholami, et al. "There is no Difference Between Sequences of HIV-1 Infected Patients with Stable Clinical Status and HIV-1 Reference Sequence." Infectious Disorders - Drug Targets 19, no. 1 (2019): 67–72. http://dx.doi.org/10.2174/1871526518666180222111611.

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Background: The rate of human immunodeficiency virus type 1 (HIV-1) infection in Iran has increased dramatically in the past few years. HIV-1 genome sequences are pivotal for large-scale studies of inter- and intra-host evolution. To understand the molecular difference between reference HIV-1 isolate and two HIV-1 infected patients in Iran, we conducted this study to analyze some genome segments of Iranian HIV-1 isolates. Methods: Two HIV-1-infected individuals who were under antiretroviral therapy (ARV) for 8 years with stable clinical status were enrolled. The patient’s plasma samples were u

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Gerbaldi, M., J. Zorec, F. Castelli та R. Faraggiana. "Parameters Teff and L/L⊙ for a Group of λ Bootis Candidate Stars and their Evolutionary Status". International Astronomical Union Colloquium 138 (1993): 413–17. http://dx.doi.org/10.1017/s0252921100020820.

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AbstractThe Teff value, according to the definition of this parameter, is computed with the procedure described; the observations are then compared with the flux distribution from Kurucz’ LTE blanketed models for various values of the metallicity parameter [Z/H].Then we derive the bolometric luminosity L/L⊙ by combining the stellar bolometric flux with the values of the trigonometric parallaxes and of the colour excess found in the literature. These luminosities are then plotted on evolutionary sequences; from the position of some λ Boo stars (ρ Vir and π1 Ori), we argue that their evolutionar

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P. SHALlNl PILLAI, GEETHAKUMARI, V. L., and SHEEBA REBECCA ISSAC. "Balance-sheet of soil nitrogen in rice (Oryza sativa) based cropping systems under integrated nutrient management." Indian Journal of Agronomy 52, no. 1 (2001): 16–20. http://dx.doi.org/10.59797/ija.v52i1.4881.

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A field experiment was conducted at Rice Research Station, Kayamkulam, Alappuzha in Kerala to assess the impact of integrated nutrient management (INM) on four rice (Oryza sativa L.)-based cropping systems, compris- ing rice during the rainy (kharifj and winter (rabi) seasons; and four different crops during the summer season, in terms of their productivity, effect on the organic carbon of soil and nitrogen balance. Inclusion of legumes in the cropping system and integrated nutrient management improved the organic carbon status of the soil. The crop sequences rice-rice-cowpea [Vigna unguiculat

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RESIDA, E., T. CHIKMAWATI, N. ARIYANTI, and FITMAWATI. "MANGIFERA KEMANGA BLUME (ANACARDIACEAE) TAXONOMIC ASSESSMENT FOR GENETIC DIVERSITY BASED ON MOLECULAR SUBSTANTIATION." SABRAO Journal of Breeding and Genetics 55, no. 1 (2023): 175–86. http://dx.doi.org/10.54910/sabrao2023.55.1.17.

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Mangifera kemanga Blume is a wild relative of mango (Mangifera indica) and a local fruit with various potential uses. The community uses its fruit and leaves for food and its wood as a building material. However, the genetic diversity and taxonomic status of M. kemanga species still need more exploration and have a dispute with M. caesia Jack. The presented study aimed to determine the taxonomic status of M. kemanga and its relationship with M. caesia through a molecular approach and to recognize the species’ delimitation. The recorded data analysis used the trnL-trnF intergenic spacer sequenc

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FUJITA, Nobuyuki. "Current Status of International Negotiations on Digital Sequence Information." TRENDS IN THE SCIENCES 23, no. 9 (2018): 9_69–9_73. http://dx.doi.org/10.5363/tits.23.9_69.

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Scrable, Heidi, and Peter J. Stambrook. "Activation of the lac Repressor in the Transgenic Mouse." Genetics 147, no. 1 (1997): 297–304. http://dx.doi.org/10.1093/genetics/147.1.297.

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Abstract We have introduced sequences encoding the lac repressor of Escherichia coli into the genome of the mouse. One sequence was derived from the bacterial lac operon and the other was created by reencoding the amino acid sequence of lacI with mammalian codons. Both versions are driven by an identical promoter fragment derived from the human β-actin locus and were microinjected into genetically identical pronuclear stage embryos. All transgenes utilizing the bacterial coding sequence were transcriptionally silent in all somatic tissues tested. The sequence re-encoded with mammalian codons w

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Cheng, Wen-Yueh, Bao-Shen Chen, Hsiao-Chi Wang, and Ming-Tsan Liu. "Genetic Characteristics of Measles Viruses Isolated in Taiwan between 2015 and 2020." Viruses 15, no. 1 (2023): 211. http://dx.doi.org/10.3390/v15010211.

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A genetic analysis of circulating measles virus (MeV) provides strong evidence of an interruption in endemic measles and supports the elimination status of this disease. This study investigated 219 MeVs isolated between 2015 and 2020. Based on the 450 nucleotide sequences of the nucleoprotein gene (N-450), three genotypes of the H1, D8 and B3 with 8, 18 and 6 different N-450 sequences, respectively, were identified. The H1 genotype virus has not circulated in Taiwan since 2017, and the D8 and B3 genotype MeVs became dominant between 2018 and 2019. Different D8 genotype variants were imported f

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Boyd, Scott D., Jason D. Merker, James L. Zehnder, and Andrew Z. Fire. "High-Throughput Sequencing for Diagnosis, Prognosis and Monitoring of Lymphoid Malignancies." Blood 112, no. 11 (2008): 3779. http://dx.doi.org/10.1182/blood.v112.11.3779.3779.

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Abstract New high-throughput DNA sequencing methods have many advantages for the analysis of rearranged immunoglobulin (Ig) and T cell receptor (TCR) loci in suspected lymphoid malignancies. Instead of primarily analyzing the size distribution of rearranged immune receptors using gel or capillary electrophoresis, sequencing complex nucleic acid pools provides much more complete characterization of the receptor sequences present. Currently, separate assays are used to evaluate Ig and TCR clonality, Ig hypermutation status, and to test for residual malignant cells after treatment. We used multip

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NICOLAS, FRANCOIS, and YURI PRITYKIN. "ON UNIFORMLY RECURRENT MORPHIC SEQUENCES." International Journal of Foundations of Computer Science 20, no. 05 (2009): 919–40. http://dx.doi.org/10.1142/s0129054109006966.

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A pure morphic sequence is a right-infinite, symbolic sequence obtained by iterating a letter-to-word substitution. For instance, the Fibonacci sequence and the Thue–Morse sequence, which play an important role in theoretical computer science, are pure morphic. Define a coding as a letter-to-letter substitution. The image of a pure morphic sequence under a coding is called a morphic sequence.A sequence x is called uniformly recurrent if for each finite subword u of x there exists an integer l such that u occurs in every l-length subword of x.The paper mainly focuses on the problem of deciding

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P. SESHA SAlLA SREE and V. SRIDHAR. "Production potential, economics and soil fertility status. of sunflower (Helianthus annuus)-based cropping sequences under scarce rainfall zone of Andhra Pradesh." Indian Journal of Agronomy 50, no. 1 (2001): 22–23. http://dx.doi.org/10.59797/ija.v50i1.5051.

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A field experiment was conducted for 5 years (1 996-97 to 2000-2001) at Regional Agricultural Research Station, Nandyal, revealed that among different cropping sequences involving sunflower (Helianthus annuus L.) the sunflower-equivalent yield of groundnut (Arachis hypogaea L.)-sunflower was the highest (1,555 kglha) and was at par with setaria (Setaria sp.)-sunflower (1,545 kglha) and sunflower-sunflower (1,503 kglha). The net re- turns and benefit : cost ratio were the highest for setaria-sunflower followed by sunflower-sunflower sequence. The soil fertility status of rainfed cropping system

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Jiang, Jiming, and Bikram S. Gill. "Current status and the future of fluorescence in situ hybridization (FISH) in plant genome research." Genome 49, no. 9 (2006): 1057–68. http://dx.doi.org/10.1139/g06-076.

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Fluorescence in situ hybridization (FISH), which allows direct mapping of DNA sequences on chromosomes, has become the most important technique in plant molecular cytogenetics research. Repetitive DNA sequence can generate unique FISH patterns on individual chromosomes for karyotyping and phylogenetic analysis. FISH on meiotic pachytene chromosomes coupled with digital imaging systems has become an efficient method to develop physical maps in plant species. FISH on extended DNA fibers provides a high-resolution mapping approach to analyze large DNA molecules and to characterize large genomic l

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Ma, Jun, Mei Fan, and Yi De Ma. "Program Simulation of Cell Division and Differentiation Based on P-Code." Advanced Materials Research 749 (August 2013): 221–27. http://dx.doi.org/10.4028/www.scientific.net/amr.749.221.

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By observing the process of hatch chickens, then combined with the modern biological knowledge and computer programming technology the paper proposed a hypothesis--coding sequence of DNA in cell is a set of program code sequence which includes instructions and data. And by making some program model, the paper simulated the two key procedures in life phenomena, namely cell division and cell differentiation. Then we can get some interesting ideas: If we look DNA coding sequence as program code sequence, the life phenomena is fully consistent with the principle of computer process . It is a macro

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Nuryanto, Agus, Kusbiyanto Kusbiyanto, and Dian Bhagawati. "Molecular barcoding of marine ornamental fish from the southern coast of West Java validates conventional identification." E3S Web of Conferences 322 (2021): 01004. http://dx.doi.org/10.1051/e3sconf/202132201004.

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Conventional identification of marine ornamental fish has faced difficulties due to similar color patterns of closed related species, or juvenile individuals have different color patterns from adult individuals. Molecular barcoding using the cytochrome c oxidase I (COI) gene provides a reliable tool for unmasking such difficulties. This study aimed to barcode marine ornamental fish from the southern coast of West Java. Fragment of the COI gene was sequenced from 54 morphotypes. In this study, we determined the taxonomic status of the samples based on a 5% genetic divergence, with the parameter

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Ko, Minoru S. H. "Embryogenomics of pre-implantation mammalian development: current status." Reproduction, Fertility and Development 16, no. 2 (2004): 79. http://dx.doi.org/10.1071/rd03080.

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Pre-implantation development is marked by many critical molecular events, including the maternal to zygotic transition and the first differentiation of cells. Understanding such events is important, for both basic reproductive biology and practical applications, including regenerative medicine and livestock production. Scarcity of materials has hampered the progress of the field, but systematic genomics approaches are beginning to be applied to the study of pre-implantation development, resulting in unprecedented amounts of data about the pre-implantation process. The first step in embryogenom

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Kairova, Markhabat, and Gulnara Sitpayeva. "Sequencing conserved region of endangered species Celtis caucasica Willd." BIO Web of Conferences 31 (2021): 00009. http://dx.doi.org/10.1051/bioconf/20213100009.

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The rarest species of relict ironwood C. caucasica Willd. is naturally occurred on the Ile-Alatau Mountains but very little is known about genetic diversity and distribution and size of its populations in Kazakhstan. In during the sampling expedition were found two additional plant populations in Dzungarian and Kyrgyz Alatau Ranges. The objective of this work was targeted towards sequencing ITS region of C. caucasica and compare the obtained nucleotide sequence with available data on NCBI GeneBank for confident species identification. The identity of C. caucasica sequence and available C. aust

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Senathipathi, Deep Nithun, Soottawat Benjakul, Phutthipong Sukkapat, Matsapume Detcharoen, Gururaj Moorthy, and Jirakrit Saetang. "DNA Barcoding Revealed Mislabeling of Imported Seafood Products in Thailand." Fishes 9, no. 6 (2024): 215. http://dx.doi.org/10.3390/fishes9060215.

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Seafood mislabeling threatens customer rights and causes economic loss worldwide. The information on seafood misrepresentation in Thailand is still lacking, and the investigation and monitoring program must be well established. This study investigated the mislabeling status of imported seafood in Thailand using the DNA barcoding technique. A total of 45 imported seafood products from five distributors were included. Scientific, common, local, and market names of seafood samples were obtained from FAO and Fishbase databases. DNA was extracted, and PCR was performed using a universal primer targ

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Staden, Rodger. "The current status and portability of our sequence handling software." Nucleic Acids Research 14, no. 1 (1986): 217–31. http://dx.doi.org/10.1093/nar/14.1.217.

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Habermann, Peter, Lillian Lodge Kopenhaver, and David L. Martinson. "Sequence Faculty Divided on PR Value, Status and News Orientation." Journalism Quarterly 65, no. 2 (1988): 490–96. http://dx.doi.org/10.1177/107769908806500235.

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Kobayashi, Genki, and Ryutaro Goto. "Molecular phylogenetic assessment of Spirobranchus kraussii-complex (Annelida: Serpulidae) from the Japanese Archipelago." PeerJ 9 (July 14, 2021): e11746. http://dx.doi.org/10.7717/peerj.11746.

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Spirobranchus kraussii (Annelida: Serpulidae) was recognized as being widely distributed both in the Pacific and Atlantic Oceans. However, the sampling records far from its type locality (South Africa) have been questioned. Actually, recent molecular phylogenetic studies showed that S. kraussii contains genetically distinct species. In this study, we performed molecular phylogenetic analyses of S. cf. kraussii collected from Japan using the nucleotide sequences of a mitochondrial gene and two nuclear genes. Three lineages were recovered within Spirobranchus kraussii-complex in Japan, and one (

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Kulkarni, Krishnanand P., Richmond K. Appiah, Umesh K. Reddy, and Kalpalatha Melmaiee. "Cleaved Amplified Polymorphic Sequence Markers in Horticultural Crops: Current Status and Future Perspectives." Agronomy 14, no. 11 (2024): 2598. http://dx.doi.org/10.3390/agronomy14112598.

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DNA markers have broad applications, including marker-assisted selection (MAS) for breeding new cultivars. Currently, single nucleotide polymorphisms (SNPs) have become a preferred choice of markers for molecular geneticists and breeders. They offer many advantages, such as high abundance and coverage in the genome, codominant inheritance, locus specificity, and flexibility for high-throughput genotyping/detection formats, and they are relatively inexpensive. The availability of reference genome sequences enables precise identification of candidate genes and SNPs associated with a trait of int

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Tietze, Klaus-Werner, and Heinz-Gerd Röhling. "Sequence-, base level- and cyclostratigraphy in the Buntsandstein – a status report." Schriftenreihe der Deutschen Gesellschaft für Geowissenschaften 69 (August 31, 2014): 233–68. http://dx.doi.org/10.1127/sdgg/69/2014/233.

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Chen, Yunteng, Lijun Wei, Qiong Bao, and Huansong Zhang. "Real-Time Run-Off-Road Risk Prediction Based on Deep Learning Sequence Forecasting Approach." Mathematics 12, no. 22 (2024): 3456. http://dx.doi.org/10.3390/math12223456.

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Driving risk prediction is crucial for advanced driving technologies, with deep learning approaches leading the way in driving safety analysis. Current driving risk prediction methods typically establish a mapping between driving features and risk statuses. However, status prediction fails to provide detailed risk sequence information, and existing driving safety analyses seldom focus on run-off-road (ROR) risk. This study extracted 660 near-roadside lane-changing samples from the high-D natural driving dataset. The performance of sequence and status prediction for ROR risk was compared across

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Kim, Kyoung-Ok, Kwang-Soo Shin, Mi Na Kim, et al. "Reassessment of the status of Streptomyces setonii and reclassification of Streptomyces fimicarius as a later synonym of Streptomyces setonii and Streptomyces albovinaceus as a later synonym of Streptomyces globisporus based on combined 16S rRNA/gyrB gene sequence analysis." International Journal of Systematic and Evolutionary Microbiology 62, Pt_12 (2012): 2978–85. http://dx.doi.org/10.1099/ijs.0.040287-0.

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The 16S rRNA and gyrB genes of 22 Streptomyces strains belonging to the Streptomyces griseus cluster were sequenced, and their taxonomic positions were re-evaluated. For correct analysis, all of the publicly available sequences of the species were collected and compared with those obtained in this study. Species for which no consensus sequence could be identified were excluded from the phylogenetic analysis. The levels of 16S rRNA gene sequence similarity within the cluster ranged from 98.6 to 100 % with a mean value of 99.6±0.3 %, and those of the gyrB gene ranged from 93.6 to 99.9 % with a m

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Greenlees, J. P. C. "Homotopy equivariance, strict equivariance and induction theory." Proceedings of the Edinburgh Mathematical Society 35, no. 3 (1992): 473–92. http://dx.doi.org/10.1017/s0013091500005757.

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An obvious question occurs at the very start of equivariant homotopy theory. What is the relationship between maps equivariant up to homotopy and strictly equivariant maps? This question has been studied by various people, usually away from the group order ([8, 11, 22, 25, 26]). We consider the problem stably and answer it by giving a spectral sequence proceeding from homotopy equivariant to strictly equivariant information. The form of the spectral sequence is not surprising, but there are three distinctive features of our approach: (1) we show that the spectral sequence may be viewed as an A

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