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Journal articles on the topic 'TATA Box'

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Published: 4 June 2021
Last updated: 26 July 2025

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1

Klug, J., S. Knapp, I. Castro, and M. Beato. "Two distinct factors bind to the rabbit uteroglobin TATA-box region and are required for efficient transcription." Molecular and Cellular Biology 14, no. 9 (1994): 6208–18. http://dx.doi.org/10.1128/mcb.14.9.6208-6218.1994.

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The rabbit uteroglobin gene is expressed in a variety of epithelial cell types like the lung Clara cells and the glandular and luminal epithelial cells of the endometrium. Expression in Clara cells is on a high constitutive level, whereas expression in the rabbit endometrium is under tight hormonal control. One important element of the rabbit uteroglobin gene mediating its efficient transcription in two epithelial cell lines from human endometrium (Ishikawa) and lung (NCI-H441) is its noncanonical TATA box (TACA). Here, we show that two factors (TATA core factor [TCF] and TATA palindrome facto
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2

Klug, J., S. Knapp, I. Castro, and M. Beato. "Two distinct factors bind to the rabbit uteroglobin TATA-box region and are required for efficient transcription." Molecular and Cellular Biology 14, no. 9 (1994): 6208–18. http://dx.doi.org/10.1128/mcb.14.9.6208.

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The rabbit uteroglobin gene is expressed in a variety of epithelial cell types like the lung Clara cells and the glandular and luminal epithelial cells of the endometrium. Expression in Clara cells is on a high constitutive level, whereas expression in the rabbit endometrium is under tight hormonal control. One important element of the rabbit uteroglobin gene mediating its efficient transcription in two epithelial cell lines from human endometrium (Ishikawa) and lung (NCI-H441) is its noncanonical TATA box (TACA). Here, we show that two factors (TATA core factor [TCF] and TATA palindrome facto
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3

Klug, J., and M. Beato. "Binding of YY1 to a site overlapping a weak TATA box is essential for transcription from the uteroglobin promoter in endometrial cells." Molecular and Cellular Biology 16, no. 11 (1996): 6398–407. http://dx.doi.org/10.1128/mcb.16.11.6398.

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The gene for rabbit uteroglobin codes for a small calcium-, steroid-, and biphenyl metabolite-binding homodimeric protein which is expressed in a variety of epithelial cell types such as Clara cells (lung) and the glandular and luminal cells of the endometrium. One important region mediating its efficient transcription in a human endometrium-derived cell line, Ishikawa, is centered around a noncanonical TATA box. Two factors, TATA core factor (TCF), expressed in cell lines derived from uteroglobin-expressing tissues, and the ubiquitously expressed TATA palindrome factor, bind to the DNA major
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4

Cox, J. M., M. M. Hayward, J. F. Sanchez, et al. "Bidirectional binding of the TATA box binding protein to the TATA box." Proceedings of the National Academy of Sciences 94, no. 25 (1997): 13475–80. http://dx.doi.org/10.1073/pnas.94.25.13475.

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5

Davis, Natalie A., Sangita S. Majee, and Jason D. Kahn. "TATA Box DNA Deformation with and without the TATA Box-binding Protein." Journal of Molecular Biology 291, no. 2 (1999): 249–65. http://dx.doi.org/10.1006/jmbi.1999.2947.

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6

Li, J. J., R. H. Kim, and J. Sodek. "An inverted TATA box directs downstream transcription of the bone sialoprotein gene." Biochemical Journal 310, no. 1 (1995): 33–40. http://dx.doi.org/10.1042/bj3100033.

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The orientation of the TATA box is thought to direct downstream transcription of eukaryotic genes by RNA polymerase II. However, the putative TATA box in the promoter of the bone sialoprotein (BSP) gene, which codes for a tissue-specific and developmentally regulated bone matrix protein, is inverted (5′-TTTATA-3′) relative to the consensus TATA box sequence (5′-TATAAA-3′) and is overlapped by a vitamin D3-response element. Here we show that the inverted TATA sequence in the rat BSP gene binds to recombinant TATA-box-binding protein (TBP) with an affinity similar to that observed with the conse
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7

Hyde, John E., Paul F. G. Sims, Martin Read, and Michael B. McAndrew. "Deviant TATA-box binding protein." Nature 360, no. 6404 (1992): 541. http://dx.doi.org/10.1038/360541b0.

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8

Burley, Stephen K. "The TATA box binding protein." Current Opinion in Structural Biology 6, no. 1 (1996): 69–75. http://dx.doi.org/10.1016/s0959-440x(96)80097-2.

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9

Burley, Stephen K., and Robert G. Roeder. "TATA Box Mimicry by TFIID." Cell 94, no. 5 (1998): 551–53. http://dx.doi.org/10.1016/s0092-8674(00)81596-2.

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10

Phillips, Simon E. V. "Saddling up the TATA box." Current Biology 3, no. 2 (1993): 112–14. http://dx.doi.org/10.1016/0960-9822(93)90168-n.

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11

Jacobs, Howy. "Thinking outside the TATA box." EMBO reports 15, no. 1 (2013): 1. http://dx.doi.org/10.1002/embr.201338175.

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12

SUSLOV, VALENTIN V., PETR M. PONOMARENKO, VADIM M. EFIMOV, LUDMILA K. SAVINKOVA, MIKHAIL P. PONOMARENKO, and NIKOLAY A. KOLCHANOV. "SNPS IN THE HIV-1 TATA BOX AND THE AIDS PANDEMIC." Journal of Bioinformatics and Computational Biology 08, no. 03 (2010): 607–25. http://dx.doi.org/10.1142/s0219720010004677.

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Evolutionary trends have been examined in 146 HIV-1 forms (2662 copies, 2311 isolates) polymorphic for the TATA box using the "DNA sequence→affinity for TBP" regression (TBP is the TATA binding protein). As a result, a statistically significant excess of low-affinity TATA box HIV-1 variants corresponding to a low level of both basal and TAT-dependent expression and, consequently, slow replication of HIV-1 have been detected. A detailed analysis revealed that the excess of slowly replicating HIV-1 is associated with the subtype E-associated TATA box core sequence "CATAAAA". Principal Component
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13

Howe, J. G., and M. D. Shu. "Upstream basal promoter element important for exclusive RNA polymerase III transcription of the EBER 2 gene." Molecular and Cellular Biology 13, no. 5 (1993): 2655–65. http://dx.doi.org/10.1128/mcb.13.5.2655-2665.1993.

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The Epstein-Barr virus-encoded small RNA (EBER) genes are transcribed by RNA polymerase III, but their transcription unit appears to contain both class II and class III promoter elements. One of these promoter element, a TATA-like box which we call the EBER TATA box, or ETAB, is located in a position typical for a class II TATA box but contains G/C residues in the normal T/A motif and a conserved thymidine doublet. Experiments using chloramphenicol acetyltransferase constructs and mutations in the TATA box of the adenovirus major late promoter showed that the ETAB promoter element does not sub
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14

Howe, J. G., and M. D. Shu. "Upstream basal promoter element important for exclusive RNA polymerase III transcription of the EBER 2 gene." Molecular and Cellular Biology 13, no. 5 (1993): 2655–65. http://dx.doi.org/10.1128/mcb.13.5.2655.

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The Epstein-Barr virus-encoded small RNA (EBER) genes are transcribed by RNA polymerase III, but their transcription unit appears to contain both class II and class III promoter elements. One of these promoter element, a TATA-like box which we call the EBER TATA box, or ETAB, is located in a position typical for a class II TATA box but contains G/C residues in the normal T/A motif and a conserved thymidine doublet. Experiments using chloramphenicol acetyltransferase constructs and mutations in the TATA box of the adenovirus major late promoter showed that the ETAB promoter element does not sub
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15

Arkova, O. V., N. A. Kuznetsov, O. S. Fedorova, N. A. Kolchanov, and L. K. Savinkova. "Real-Time Interaction between TVR and the TATA Box of the Human Triosephosphate Isomerase Gene Promoter in the Norm and Pathology." Acta Naturae 6, no. 2 (2014): 36–40. http://dx.doi.org/10.32607/20758251-2014-6-2-36-40.

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The TATA-binding protein (ТВР) is a key part of the transcription complex of RNA polymerase II. Alone or as a part of the basal transcription factor TFIID, TBP binds the TATA box located in the core region of the TATA-containing promoters of class II genes. Previously, we studied the effects of single nucleotide polymorphisms (SNPs) on ТВР/ТАТА-box interactions using gel retardation assay. It was demonstrated that most SNPs in the ТАТА boxes of some human gene promoters cause a 2- to 4-fold decrease in ТВР/ТАТА affinity, which is associated with an increased risk of hereditary diseases, such a
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16

Zhao, Xuemei, and Winship Herr. "Role of the Inhibitory DNA-Binding Surface of Human TATA-Binding Protein in Recruitment of Human TFIIB Family Members." Molecular and Cellular Biology 23, no. 22 (2003): 8152–60. http://dx.doi.org/10.1128/mcb.23.22.8152-8160.2003.

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ABSTRACT TATA box recognition by TATA-binding protein (TBP) is a key step in transcriptional initiation complex assembly on TATA-box-containing RNA polymerase (Pol) II and III promoters. This process is inhibited by the inhibitory DNA-binding (IDB) surface on the human TBP core domain (TBPCORE) and is stimulated by promoter-specific basal transcription factors, such as two human TFIIB family members, the Pol II factor TFIIB and the Pol III factor Brf2, which is required for transcription from TATA-box-containing Pol III promoters. In contrast, the third TFIIB family member, Brf1, which is requ
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17

Loganantharaj, Raja. "Discriminating TATA box from putative TATA boxes in plant genome." International Journal of Bioinformatics Research and Applications 2, no. 1 (2006): 36. http://dx.doi.org/10.1504/ijbra.2006.009192.

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18

Cook, W. J., B. Gu, N. A. DeLuca, E. B. Moynihan, and D. M. Coen. "Induction of transcription by a viral regulatory protein depends on the relative strengths of functional TATA boxes." Molecular and Cellular Biology 15, no. 9 (1995): 4998–5006. http://dx.doi.org/10.1128/mcb.15.9.4998.

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The mechanisms by which viral regulatory proteins activate the cellular transcription apparatus without binding to specific DNA elements are not fully understood. Several lines of evidence suggest that activation by one such regulatory protein, herpes simplex virus ICP4, could be mediated, at least in part, by TFIID. To test this model, we replaced the TATA box of the ICP4-responsive viral thymidine kinase gene with functional TATA boxes that displayed different apparent affinities for TATA-box-binding protein as measured by DNase I footprinting. We measured the effects of these TATA boxes on
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19

Greenblatt, Jack. "Riding high on the TATA box." Nature 360, no. 6399 (1992): 16–17. http://dx.doi.org/10.1038/360016a0.

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20

Schmidt, M. C., C. C. Kao, R. Pei, and A. J. Berk. "Yeast TATA-box transcription factor gene." Proceedings of the National Academy of Sciences 86, no. 20 (1989): 7785–89. http://dx.doi.org/10.1073/pnas.86.20.7785.

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21

Juo, Zong Sean, Thang Kien Chiu, Paul M. Leiberman, Igor Baikalov, Arnold J. Berk, and Richard E. Dickerson. "How Proteins Recognize the TATA Box." Journal of Molecular Biology 261, no. 2 (1996): 239–54. http://dx.doi.org/10.1006/jmbi.1996.0456.

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22

Ardjo, Anwar Sukito, Timotius Anggit Kristiawan, Wahyu Isti Nugroho, and Padang Yanuar. "Analisis Efisiensi Tata Potong pada Praktik Kerja Plat Mahasiswa Jurusan Teknik Mesin." Jurnal Rekayasa Mesin 16, no. 3 (2021): 467. http://dx.doi.org/10.32497/jrm.v16i3.3081.

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<p>Aktivitas praktik kerja plat pada program studi teknik mesin penggunaan lembaran baja masih belum efisien. Sisa pemotongan yang berukuran besar masih cukup banyak dan lembar kerja belum memberi kompetensi tata potong. Hal ini menimbulkan kerugian bila terjadi pada produksi masal. Tujuan penelitian ini adalah adalah melakukan analisis efisiensi tata potong plat baja pada praktik kerja plat mahasiswa jurusan teknik mesin. Obyek penelitian dilakukan untuk empat macam produk, yaitu : coolant box, keys box, paper trays, dan tools box. Metode yang digunakan adalah System Development Life Cy
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23

Civáň, P., and M. Švec. "Genome-wide analysis of rice (Oryza sativa L. subsp. japonica) TATA box and Y Patch promoter elements." Genome 52, no. 3 (2009): 294–97. http://dx.doi.org/10.1139/g09-001.

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The TATA box is one of the best characterized transcription factor binding sites. However, it is not a ubiquitous element of core promoters, and other sequence motifs such as Y Patches seem to play a major role in plants. Here, we present a first genome-wide computational analysis of the TATA box and Y Patch distribution in rice ( Oryza sativa L. subsp. japonica) promoter sequences. Utilizing a probabilistic sequence model, we ascertain that only ~19% of rice genes possess the TATA box, but ~50% contain one or more Y Patches in their core promoters. By computational processing of identified el
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24

McBryant, S. J., E. Meier, A. Leresche, S. J. Sharp, V. J. Wolf, and J. M. Gottesfeld. "TATA-box DNA binding activity and subunit composition for RNA polymerase III transcription factor IIIB from Xenopus laevis." Molecular and Cellular Biology 16, no. 9 (1996): 4639–47. http://dx.doi.org/10.1128/mcb.16.9.4639.

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The RNA polymerase III transcription initiation factor TFIIIB contains the TATA-box-binding protein (TBP) and polymerase III-specific TBP-associated factors (TAFs). Previous studies have shown that DNA oligonucleotides containing the consensus TATA-box sequence inhibit polymerase III transcription, implying that the DNA binding domain of TBP is exposed in TFIIIB. We have investigated the TATA-box DNA binding activity of Xenopus TFIIIB, using transcription inhibition assays and a gel mobility shift assay. Gel shift competition assays with mutant and nonspecific DNAs demonstrate the specificity
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25

Majumder, S., and M. L. DePamphilis. "TATA-dependent enhancer stimulation of promoter activity in mice is developmentally acquired." Molecular and Cellular Biology 14, no. 6 (1994): 4258–68. http://dx.doi.org/10.1128/mcb.14.6.4258-4268.1994.

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Herpes simplex virus (HSV) thymidine kinase (tk) promoter activity depends on four transcription factor binding sites, one of which is a TATA box sequence, and the presence of either a cis-acting enhancer sequence or a transactivator protein. Studies presented here show that this TATA box was required for promoter activity only after cells began to differentiate and then only when promoter activity was stimulated by either an enhancer or a transactivator. When the HSV tk promoter was utilized by mouse embryos from the one-cell to eight-cell stage of development or by undifferentiated mouse emb
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26

Majumder, S., and M. L. DePamphilis. "TATA-dependent enhancer stimulation of promoter activity in mice is developmentally acquired." Molecular and Cellular Biology 14, no. 6 (1994): 4258–68. http://dx.doi.org/10.1128/mcb.14.6.4258.

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Herpes simplex virus (HSV) thymidine kinase (tk) promoter activity depends on four transcription factor binding sites, one of which is a TATA box sequence, and the presence of either a cis-acting enhancer sequence or a transactivator protein. Studies presented here show that this TATA box was required for promoter activity only after cells began to differentiate and then only when promoter activity was stimulated by either an enhancer or a transactivator. When the HSV tk promoter was utilized by mouse embryos from the one-cell to eight-cell stage of development or by undifferentiated mouse emb
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27

Strömstedt, P. E., L. Poellinger, J. A. Gustafsson, and J. Carlstedt-Duke. "The glucocorticoid receptor binds to a sequence overlapping the TATA box of the human osteocalcin promoter: a potential mechanism for negative regulation." Molecular and Cellular Biology 11, no. 6 (1991): 3379–83. http://dx.doi.org/10.1128/mcb.11.6.3379-3383.1991.

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Expression of the human osteocalcin promoter is negatively regulated by glucocorticoids in vivo. In vitro DNase I and exonuclease III footprinting analysis showed binding of purified glucocorticoid receptor in close proximity to and overlapping with the TATA box of the osteocalcin gene. These results imply competition or interference with binding of the TATA box-binding transcription factor IID as a mechanism of repression of this gene by glucocorticoids. In support of this notion, point mutation analysis of the receptor binding site indicated that flanking nucleotides and not the TATA box mot
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28

Strömstedt, P. E., L. Poellinger, J. A. Gustafsson, and J. Carlstedt-Duke. "The glucocorticoid receptor binds to a sequence overlapping the TATA box of the human osteocalcin promoter: a potential mechanism for negative regulation." Molecular and Cellular Biology 11, no. 6 (1991): 3379–83. http://dx.doi.org/10.1128/mcb.11.6.3379.

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Expression of the human osteocalcin promoter is negatively regulated by glucocorticoids in vivo. In vitro DNase I and exonuclease III footprinting analysis showed binding of purified glucocorticoid receptor in close proximity to and overlapping with the TATA box of the osteocalcin gene. These results imply competition or interference with binding of the TATA box-binding transcription factor IID as a mechanism of repression of this gene by glucocorticoids. In support of this notion, point mutation analysis of the receptor binding site indicated that flanking nucleotides and not the TATA box mot
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29

Tora, Laszlo, and H. Th Marc Timmers. "The TATA box regulates TATA-binding protein (TBP) dynamics in vivo." Trends in Biochemical Sciences 35, no. 6 (2010): 309–14. http://dx.doi.org/10.1016/j.tibs.2010.01.007.

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30

Patterton, H. G., and R. T. Simpson. "Nucleosomal location of the STE6 TATA box and Mat alpha 2p-mediated repression." Molecular and Cellular Biology 14, no. 6 (1994): 4002–10. http://dx.doi.org/10.1128/mcb.14.6.4002-4010.1994.

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It has been proposed that yeast MATa cell-specific genes are repressed in MAT alpha cells by the Mat alpha 2p repressor-directed placement of a nucleosome in a position that incorporates the TATA box of the MATa-specific gene close to the nucleosomal pseudodyad. In this study, we address this proposal directly with a series of plasmids designed to place the MATa-specific STE6 TATA box at different locations in a nucleosome and in the internucleosomal linker. These plasmids contain different lengths of synthetic random DNA between the Mat alpha 2p operator and the TATA box of the STE6 promoter,
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31

Patterton, H. G., and R. T. Simpson. "Nucleosomal location of the STE6 TATA box and Mat alpha 2p-mediated repression." Molecular and Cellular Biology 14, no. 6 (1994): 4002–10. http://dx.doi.org/10.1128/mcb.14.6.4002.

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It has been proposed that yeast MATa cell-specific genes are repressed in MAT alpha cells by the Mat alpha 2p repressor-directed placement of a nucleosome in a position that incorporates the TATA box of the MATa-specific gene close to the nucleosomal pseudodyad. In this study, we address this proposal directly with a series of plasmids designed to place the MATa-specific STE6 TATA box at different locations in a nucleosome and in the internucleosomal linker. These plasmids contain different lengths of synthetic random DNA between the Mat alpha 2p operator and the TATA box of the STE6 promoter,
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32

van Opijnen, Tim, Joost Kamoschinski, Rienk E. Jeeninga, and Ben Berkhout. "The Human Immunodeficiency Virus Type 1 Promoter Contains a CATA Box Instead of a TATA Box for Optimal Transcription and Replication." Journal of Virology 78, no. 13 (2004): 6883–90. http://dx.doi.org/10.1128/jvi.78.13.6883-6890.2004.

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ABSTRACT The human immunodeficiency virus type 1 (HIV-1) transcriptional promoter contains a single polymorphism in the TATA box. Most subtypes contain the sequence TATAAGC, but subtype E and some recombinant AG strains have the sequence TA A AAGC. Based on mutagenesis studies of cellular RNA polymerase II (pol II) promoters, it has been proposed that the subtype E TATA box is nonfunctional due to the T-to-A substitution at the critical position 3. By means of transcription and virus replication assays, we demonstrate that the true TATA box motif within the viral long terminal repeat (LTR) pro
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33

Zabierowski, Susan E., and Neal A. DeLuca. "Stabilized Binding of TBP to the TATA Box of Herpes Simplex Virus Type 1 Early (tk) and Late (gC) Promoters by TFIIA and ICP4." Journal of Virology 82, no. 7 (2008): 3546–54. http://dx.doi.org/10.1128/jvi.02560-07.

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ABSTRACT We have recently shown that ICP4 has a differential requirement for the general transcription factor TFIIA in vitro (S. Zabierowski and N. DeLuca, J. Virol. 78:6162-6170, 2004). TFIIA was dispensable for ICP4 activation of a late promoter (gC) but was required for the efficient activation of an early promoter (tk). An intact INR element was required for proficient ICP4 activation of the late promoter in the absence of TFIIA. Because TFIIA is known to stabilize the binding of both TATA binding protein (TBP) and TFIID to the TATA box of core promoters and ICP4 has been shown to interact
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34

Arndt, K. M., C. R. Wobbe, S. Ricupero-Hovasse, K. Struhl, and F. Winston. "Equivalent mutations in the two repeats of yeast TATA-binding protein confer distinct TATA recognition specificities." Molecular and Cellular Biology 14, no. 6 (1994): 3719–28. http://dx.doi.org/10.1128/mcb.14.6.3719-3728.1994.

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To investigate the process of TATA box recognition by the TATA box-binding protein (TBP), we have performed a detailed genetic and biochemical analysis of two Saccharomyces cerevisiae TBP mutants with altered DNA-binding specificity. The mutant proteins have amino acid substitutions (Leu-205 to Phe and Leu-114 to Phe) at equivalent positions within the two repeats of TBP that are involved in TATA element binding. In an in vivo assay that employs a nearly complete set of single point mutations of the consensus TATAAA sequence, one of the TBP mutants (TBP-L114F) recognizes the sequence TATAAG, w
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35

Arndt, K. M., C. R. Wobbe, S. Ricupero-Hovasse, K. Struhl, and F. Winston. "Equivalent mutations in the two repeats of yeast TATA-binding protein confer distinct TATA recognition specificities." Molecular and Cellular Biology 14, no. 6 (1994): 3719–28. http://dx.doi.org/10.1128/mcb.14.6.3719.

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To investigate the process of TATA box recognition by the TATA box-binding protein (TBP), we have performed a detailed genetic and biochemical analysis of two Saccharomyces cerevisiae TBP mutants with altered DNA-binding specificity. The mutant proteins have amino acid substitutions (Leu-205 to Phe and Leu-114 to Phe) at equivalent positions within the two repeats of TBP that are involved in TATA element binding. In an in vivo assay that employs a nearly complete set of single point mutations of the consensus TATAAA sequence, one of the TBP mutants (TBP-L114F) recognizes the sequence TATAAG, w
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36

Song, C. Z., P. M. Loewenstein, K. Toth, Q. Tang, A. Nishikawa, and M. Green. "The adenovirus E1A repression domain disrupts the interaction between the TATA binding protein and the TATA box in a manner reversible by TFIIB." Molecular and Cellular Biology 17, no. 4 (1997): 2186–93. http://dx.doi.org/10.1128/mcb.17.4.2186.

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The human adenovirus E1A 243 amino acid oncoprotein possesses a transcription repression function that appears to be linked with its ability to induce cell cycle progression and to inhibit cell differentiation. The molecular mechanism of E1A repression has been poorly understood. Recently, we reported that the TATA binding protein (TBP) is a cellular target of E1A repression. Here we demonstrate that the interaction between TBP and the E1A repression domain is direct and specific. The TBP binding domain within E1A 243R maps to E1A N-terminal residues approximately 1 to 35 and is distinct from
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37

Zhang, Yong, Muhammad Faseeh Iqbal, Yulong Wang, et al. "OsTBP2.1, a TATA-Binding Protein, Alters the Ratio of OsNRT2.3b to OsNRT2.3a and Improves Rice Grain Yield." International Journal of Molecular Sciences 23, no. 18 (2022): 10795. http://dx.doi.org/10.3390/ijms231810795.

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The OsNRT2.3a and OsNRT2.3b isoforms play important roles in the uptake and transport of nitrate during rice growth. However, it is unclear which cis-acting element controls the transcription of OsNRT2.3 into these specific isoforms. In this study, we used a yeast one-hybrid assay to obtain the TATA-box binding protein OsTBP2.1, which binds to the TATA-box of OsNRT2.3, and verified its important role through transient expression and RNA-seq. We found that the TATA-box of OsNRT2.3 mutants and binding protein OsTBP2.1 together increased the transcription ratio of OsNRT2.3b to OsNRT2.3a. The over
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38

Metz, R., A. J. Bannister, J. A. Sutherland, et al. "c-Fos-induced activation of a TATA-box-containing promoter involves direct contact with TATA-box-binding protein." Molecular and Cellular Biology 14, no. 9 (1994): 6021–29. http://dx.doi.org/10.1128/mcb.14.9.6021-6029.1994.

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Transcriptional activation in eukaryotes involves protein-protein interactions between regulatory transcription factors and components of the basal transcription machinery. Here we show that c-Fos, but not a related protein, Fra-1, can bind the TATA-box-binding protein (TBP) both in vitro and in vivo and that c-Fos can also interact with the transcription factor IID complex. High-affinity binding to TBP requires c-Fos activation modules which cooperate to activate transcription. One of these activation modules contains a TBP-binding motif (TBM) which was identified through its homology to TBP-
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39

Metz, R., A. J. Bannister, J. A. Sutherland, et al. "c-Fos-induced activation of a TATA-box-containing promoter involves direct contact with TATA-box-binding protein." Molecular and Cellular Biology 14, no. 9 (1994): 6021–29. http://dx.doi.org/10.1128/mcb.14.9.6021.

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Transcriptional activation in eukaryotes involves protein-protein interactions between regulatory transcription factors and components of the basal transcription machinery. Here we show that c-Fos, but not a related protein, Fra-1, can bind the TATA-box-binding protein (TBP) both in vitro and in vivo and that c-Fos can also interact with the transcription factor IID complex. High-affinity binding to TBP requires c-Fos activation modules which cooperate to activate transcription. One of these activation modules contains a TBP-binding motif (TBM) which was identified through its homology to TBP-
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40

Nikolov, D. B., H. Chen, E. D. Halay, A. Hoffman, R. G. Roeder, and S. K. Burley. "Crystal structure of a human TATA box-binding protein/TATA element complex." Proceedings of the National Academy of Sciences 93, no. 10 (1996): 4862–67. http://dx.doi.org/10.1073/pnas.93.10.4862.

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41

Hsu, Li-Chung, Shu Liu, Ferishteh Abedinpour, et al. "The Murine G+C-Rich Promoter Binding Protein mGPBP Is Required for Promoter-Specific Transcription." Molecular and Cellular Biology 23, no. 23 (2003): 8773–85. http://dx.doi.org/10.1128/mcb.23.23.8773-8785.2003.

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ABSTRACT The archetypal TATA-box deficient G+C-rich promoter of the murine adenosine deaminase gene (Ada) requires a 48-bp minimal self-sufficient promoter element (MSPE) for function. This MSPE was used to isolate a novel full-length cDNA clone that encodes a 66-kDa murine G+C-rich promoter binding protein (mGPBP). The mGPBP mRNAs are ubiquitously expressed as either 3.0- or 3.5-kb forms differing in 3′ polyadenylation site usage. Purified recombinant mGPBP, in the absence of any other mammalian cofactors, binds specifically to both the murine Ada gene promoter's MSPE and the nonhomologous hu
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42

Matsui, T. "Novel regulation of transcription initiation of the peptide IX gene of adenovirus 2." Molecular and Cellular Biology 9, no. 10 (1989): 4265–71. http://dx.doi.org/10.1128/mcb.9.10.4265-4271.1989.

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cis-Acting elements involved in transcription of the peptide IX (pIX) gene of adenovirus 2 were identified by using in vivo transient expression assays and two in vitro transcription systems. Deletion of either the sequence between positions -45 and -70 or the TATA box abolished the initiation of pIX gene transcription in vivo and transcription with HeLa cell nuclear extracts in vitro. These results initially suggested the presence of a positive factor acting on the upstream element. However, when proteins in the nuclear extract were fractionated by column chromatography and analyzed by recons
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43

Matsui, T. "Novel regulation of transcription initiation of the peptide IX gene of adenovirus 2." Molecular and Cellular Biology 9, no. 10 (1989): 4265–71. http://dx.doi.org/10.1128/mcb.9.10.4265.

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cis-Acting elements involved in transcription of the peptide IX (pIX) gene of adenovirus 2 were identified by using in vivo transient expression assays and two in vitro transcription systems. Deletion of either the sequence between positions -45 and -70 or the TATA box abolished the initiation of pIX gene transcription in vivo and transcription with HeLa cell nuclear extracts in vitro. These results initially suggested the presence of a positive factor acting on the upstream element. However, when proteins in the nuclear extract were fractionated by column chromatography and analyzed by recons
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44

Joazeiro, C. A., G. A. Kassavetis, and E. P. Geiduschek. "Identical components of yeast transcription factor IIIB are required and sufficient for transcription of TATA box-containing and TATA-less genes." Molecular and Cellular Biology 14, no. 4 (1994): 2798–808. http://dx.doi.org/10.1128/mcb.14.4.2798-2808.1994.

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Specific transcription by RNA polymerase III requires recognition of the promoter-bound transcription factor IIIB (TFIIIB), of which the TATA-binding protein (TBP) is a subunit. The recruitment of TFIIIB to TATA-less genes is mediated by protein-protein interactions with transcription factor IIIC (TFIIIC) bound to the box A and box B elements. Here we examine interactions involved in the recruitment of TFIIIB to the TATA element-containing yeast U6 small nuclear RNA gene SNR6. TFIIIC is not required for the formation of TFIIIB-SNR6 gene complexes with purified components. The same three compon
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45

Joazeiro, C. A., G. A. Kassavetis, and E. P. Geiduschek. "Identical components of yeast transcription factor IIIB are required and sufficient for transcription of TATA box-containing and TATA-less genes." Molecular and Cellular Biology 14, no. 4 (1994): 2798–808. http://dx.doi.org/10.1128/mcb.14.4.2798.

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Specific transcription by RNA polymerase III requires recognition of the promoter-bound transcription factor IIIB (TFIIIB), of which the TATA-binding protein (TBP) is a subunit. The recruitment of TFIIIB to TATA-less genes is mediated by protein-protein interactions with transcription factor IIIC (TFIIIC) bound to the box A and box B elements. Here we examine interactions involved in the recruitment of TFIIIB to the TATA element-containing yeast U6 small nuclear RNA gene SNR6. TFIIIC is not required for the formation of TFIIIB-SNR6 gene complexes with purified components. The same three compon
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46

Hinkley, Craig S., Heather A. Hirsch, Liping Gu, Brandon LaMere, and R. William Henry. "The Small Nuclear RNA-activating Protein 190 Myb DNA Binding Domain Stimulates TATA Box-binding Protein-TATA Box Recognition." Journal of Biological Chemistry 278, no. 20 (2003): 18649–57. http://dx.doi.org/10.1074/jbc.m204247200.

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47

Paran, Nir, Assaf Ori, Izhak Haviv, and Yosef Shaul. "A Composite Polyadenylation Signal with TATA Box Function." Molecular and Cellular Biology 20, no. 3 (2000): 834–41. http://dx.doi.org/10.1128/mcb.20.3.834-841.2000.

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ABSTRACT A variant polyadenylation signal, which is conserved and employed by mammalian hepadnaviruses, has a sequence resembling that of the TATA box. We report here that this composite box manifests all the promoter characteristics. It binds effectively TATA-binding protein with TFIIB and TFIIA in a synergistic manner. This capacity, however, is lost when the box is converted to a canonical and simple poly(A) signal. Furthermore, we show that it has promoter activity and supports transcription of reporter genes preferentially in liver-derived cells, a characteristic behavior of the hepatitis
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48

Yusriski, Rinto, and Ragil Pardiyono. "Perbaikan Tata Letak Gudang Penyimpanan untuk Meminimalisasi Waktu Pencarian Box Komponen." Volume 24 No. 1 Juni 2022 24, no. 1 (2022): 25–34. http://dx.doi.org/10.23969/infomatek.v24i1.5740.

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Penelitian ini dilakukan pada perusahaan yang bergerak dalam bidang perbaikan komponen turbin gas pembangkit listrik. Tujuan penelitian untuk merancang tata letak gudang penyimpanan box komponen menggunakan metode dedicated storage, untuk mengurangi waktu pencarian. Dedicated storage adalah cara mengatur tata letak Gudang untuk produk berdasarkan jumlah aktivitas keluar masuk di gudang dengan jarak tempuh terpendek terhadap I/O point (throughput). Rancangan tata letak gudang berguna untuk memudahkan operator dalam menyimpan dan mengambil produk sehingga aliran produk menjadi lancar. Berdasarka
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De Dios-Bravo, Guadalupe, Juan Pedro Luna-Arias, Ana María Riverón, José J. Olivares-Trejo, César López-Camarillo, and Esther Orozco. "Entamoeba histolytica TATA-box binding protein binds to different TATA variants in vitro." FEBS Journal 272, no. 6 (2005): 1354–66. http://dx.doi.org/10.1111/j.1742-4658.2005.04566.x.

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50

Nurdin, Muhammad, Fauziah Fauziah, and Ratih Titi Komalasari. "Aplikasi Pengarsipan Surat Menyurat Berbasis Web menggunakan Metode First Come First Serve dan White Box Testing." Jurnal JTIK (Jurnal Teknologi Informasi dan Komunikasi) 6, no. 1 (2022): 145–51. http://dx.doi.org/10.35870/jtik.v6i1.395.

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Proses manajemen surat atau pengarsipan yang ada saat ini masih menggunakan manajemen konvensional atau manual dengan proses pencarian yang menggunakan waktu cukup lama, sehingga peneliti membuat aplikasi proses pengarsipan surat dan membantu pihak Tata Usaha, dengan menggunakan metode FCFS serta uji logika kode program dengan menggunakan white Box Testing. Tujuan pembuatan aplikasi kearsipan ini adalah membantu petugas Tata Usaha untuk melakukan manajemen arsip surat secara digital. Hasil pengujian black box menunjukkan setiap desain dan control fungsi yang ada pada aplikasi sesuai/valid dan
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