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Journal articles on the topic 'Taxonomic method'

Author: Grafiati

Published: 30 May 2022

Last updated: 31 July 2025

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1

Pratt, Conrad James, and Nicholas E. Mandrak. "Evaluating Batch Imaging as a Method for Non-Lethal Identification of Freshwater Fishes." Fishes 10, no. 1 (2025): 36. https://doi.org/10.3390/fishes10010036.

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Freshwater fish community surveys are an important component of aquatic ecosystem management. However, the standard method for taxonomic identification currently used for these surveys, wherein fishes are manually identified in the field by a taxonomic expert, has several shortcomings. These include handling-related fish injury and mortality, the need for a fish-identification expert to be present during field sampling, and additional fish mortality due to physical voucher collection. These shortcomings may be overcome using new methods such as environmental DNA (eDNA) or image analyses. While

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ROGERS, D. CHRISTOPHER. "Taxonomic certification versus the scientific method." Zootaxa 3257, no. 1 (2012): 66. http://dx.doi.org/10.11646/zootaxa.3257.1.5.

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Over the last 30 years or so there has been an increasing need for organism identification services. This has been the positive result of increased habitat monitoring, particularly as regards water quality. Organism diversity and community structure are used as an overall meter stick of habitat health and functionality, in a method referred to as biomonitoring. To meet the organism identification need, private and government laboratories specializing in identification work have been developed, particularly in North America, Europe and Australia. I myself have worked in this industry and was em

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Rogers, D. Christopher. "Taxonomic certification versus the scientific method." Zootaxa 3257, no. 1 (2012): 66–68. https://doi.org/10.11646/zootaxa.3257.1.5.

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Rogers, D. Christopher (2012): Taxonomic certification versus the scientific method. Zootaxa 3257 (1): 66-68, DOI: 10.11646/zootaxa.3257.1.5, URL: https://biotaxa.org/Zootaxa/article/view/zootaxa.3257.1.5

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Whittemore, Alan T. "A simple method for computerizing taxonomic treatments." TAXON 45, no. 3 (1996): 503–11. http://dx.doi.org/10.2307/1224142.

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Victor, Janine, Gideon F. Smith, and ABRAHAM E. VAN WYK. "A method for establishing taxonomic research priorities in a megadiverse country." Phytotaxa 203, no. 1 (2015): 55. http://dx.doi.org/10.11646/phytotaxa.203.1.5.

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A coordinated strategy for biosystematics research that addresses the needs of end-users can improve the relevance and impact of research products. The basic types of information that taxonomists provide, common to all organisms, are the names, descriptions, and a mechanism for identifying components of biodiversity, and associated data such as distribution information. This information is provided through taxonomic research. A biosystematics research strategy has been developed in South Africa to focus on the main gaps in taxonomic knowledge. A prioritisation process has been developed and ap

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Devine, Amanda, and Jonathan Coddington. "Taxonomic Gap Analysis: A method of evaluating the taxa represented in biodiversity databases." Biodiversity Information Science and Standards 3 (June 21, 2019): e37288. https://doi.org/10.3897/biss.3.37288.

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The Global Genome Initiative (GGI) endeavors to collect the Earth's genomic biodiversity, preserve this biodiversity as high quality genetic resources in Global Genome Biodiversity Network (GGBN) affiliated biorepositories, increase knowledge of biodiversity through genetic sequencing, and make resources and knowledge accessible to researchers via the GGBN Data Portal, the Global Catalogue of Microorganisms (GCM), and the National Center for Biotechnology Information (NCBI) GenBank. In GGI's seven year timespan, it is attempting to collect samples from all 9,870 families and half of the 165,68

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Wu, Yejun. "Developing a Taxonomic Framework of Security Methods for Security Management and Information Resource Management." Journal of Strategic Security 13, no. 2 (2020): 64–77. http://dx.doi.org/10.5038/1944-0472.13.2.1787.

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People who are concerned with security (such as security professionals) are naturally interested in methods of achieving security. This paper proposes an approach to creating a taxonomic framework of security methods. The taxonomic framework is developed using facet analysis based on a tetra-facet model of security, which identifies four facets of security: subject/scope of security, object of protection, source of insecurity, and method of protection. The taxonomic framework of security methods is created by combining two of the facets: source of insecurity and method of protection. The taxon

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Lyzhnyk, Yu B., and Yu H. Bocharova. "A PREDICTIVE APPROACH TO THE TAXONOMIC ANALYSIS OF A COMPANY'S FINANCIAL AND ECONOMIC HEALTH." Visnyk of Donetsk National University of Economics and Trade named after Mykhailo Tugan-Baranovsky, no. 1(80) (2024) (June 30, 2024): 20–30. http://dx.doi.org/10.33274/2079-4819-2024-80-1-20-30.

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Objective. The purpose of the article is to identify and evaluate alternatives to the application of the predictive approach to the taxonomic analysis of the financial and economic state of the enterprise.. Methods. During the research, the following methods are applied: the method taxonomy of (for taxonomic analysis based on the data of the enterprise «Kyivstar» PJSC); the method of analysis (for comparing integral and complex taxonomic indicators for different periods; the comparison method (for comparing the accuracy of the obtained forecast models); the autoregression forecasting method (f

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Carew, Melissa E., Rhys A. Coleman, and Ary A. Hoffmann. "Can non-destructive DNA extraction of bulk invertebrate samples be used for metabarcoding?" PeerJ 6 (June 13, 2018): e4980. http://dx.doi.org/10.7717/peerj.4980.

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Background High throughput DNA sequencing of bulk invertebrate samples or metabarcoding is becoming increasingly used to provide profiles of biological communities for environmental monitoring. As metabarcoding becomes more widely applied, new reference DNA barcodes linked to individual specimens identified by taxonomists are needed. This can be achieved through using DNA extraction methods that are not only suitable for metabarcoding but also for building reference DNA barcode libraries. Methods In this study, we test the suitability of a rapid non-destructive DNA extraction method for metaba

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Lam, Boji P. W., and Li Sheng. "Taxonomic Development in Young Bilingual Children: Task Matters, and So Does Scoring Method." American Journal of Speech-Language Pathology 29, no. 3 (2020): 1162–77. http://dx.doi.org/10.1044/2019_ajslp-19-00143.

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Purpose Taxonomic awareness is central to vocabulary development and assessment. While taxonomic development appears largely unaffected by environmental factors, the impact of divided language input on distinct levels of the taxonomic hierarchy is unclear. The influence of scoring method on tasks that target distinct levels of the taxonomic hierarchy is unexamined. Method Twenty-seven English-speaking monolingual children, 46 Mandarin–English bilingual children, and 33 Spanish–English bilingual children, ages 4–7 years, participated. We measured superordinate awareness with a category associat

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Shah, Nidhi, Erin K. Molloy, Mihai Pop, and Tandy Warnow. "TIPP2: metagenomic taxonomic profiling using phylogenetic markers." Bioinformatics 37, no. 13 (2021): 1839–45. http://dx.doi.org/10.1093/bioinformatics/btab023.

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Abstract Motivation Metagenomics has revolutionized microbiome research by enabling researchers to characterize the composition of complex microbial communities. Taxonomic profiling is one of the critical steps in metagenomic analyses. Marker genes, which are single-copy and universally found across Bacteria and Archaea, can provide accurate estimates of taxon abundances in the sample. Results We present TIPP2, a marker gene-based abundance profiling method, which combines phylogenetic placement with statistical techniques to control classification precision and recall. TIPP2 includes an updat

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Xie, Caiyun, and Junyun Wu. "Research of Conceptual Relation Extraction Based on Improved Hierarchical Clustering Method." Open Electrical & Electronic Engineering Journal 8, no. 1 (2014): 355–60. http://dx.doi.org/10.2174/1874129001408010355.

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The main task of Ontology learning is concept extraction and conceptual relation extraction. This paper mainly studies the latter. Conceptual relation consists of taxonomic relation and non-taxonomic relation. It introduces hierarchy clustering method, and uses concept hierarchy clustering method which chooses different clustering standards in each hierarchy to obtain the taxonomic relation. It improves the accuracy of the relationship extraction. For extracting the nontaxonomic relation, this paper uses a extended association rule, this method can get concrete names of relation, and confirms

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Mengoni, Alessio, Eva Grassi, and Marco Bazzicalupo. "Cloning Method for Taxonomic Interpretation of T-RFLP Patterns." BioTechniques 33, no. 5 (2002): 990–92. http://dx.doi.org/10.2144/02335bm04.

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Uvarova, Yu E., A. V. Bryanskaya, A. S. Rozanov, et al. "An integrated method for taxonomic identif ication of microorganisms." Vavilov Journal of Genetics and Breeding 24, no. 4 (2020): 376–82. http://dx.doi.org/10.18699/vj20.630.

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For accurate species-level identification of microorganisms, researchers today increasingly use a combination of standard microbiological cultivation and visual observation methods with molecular biological and genetic techniques that help distinguish between species and strains of microorganisms at the level of DNA or RNA molecules. The aim of this work was to identify microorganisms from the ICG SB RAS Collection using an integrated approach that involves a combination of various phenotypic and genotypic characteristics. Key molecular-genetic and phenotypic characteristics were determined fo

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Metwally, Ahmed A., Yang Dai, Patricia W. Finn, and David L. Perkins. "WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial Sequences." PLOS ONE 11, no. 9 (2016): e0163527. http://dx.doi.org/10.1371/journal.pone.0163527.

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Catlett, Dylan, Kevin Son, and Connie Liang. "ensembleTax: an R package for determinations of ensemble taxonomic assignments of phylogenetically-informative marker gene sequences." PeerJ 9 (July 26, 2021): e11865. http://dx.doi.org/10.7717/peerj.11865.

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Background High-throughput sequencing of phylogenetically informative marker genes is a widely used method to assess the diversity and composition of microbial communities. Taxonomic assignment of sampled marker gene sequences (referred to as amplicon sequence variants, or ASVs) imparts ecological significance to these genetic data. To assign taxonomy to an ASV, a taxonomic assignment algorithm compares the ASV to a collection of reference sequences (a reference database) with known taxonomic affiliations. However, many taxonomic assignment algorithms and reference databases are available, and

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Jones, F. Chris. "Taxonomic sufficiency: The influence of taxonomic resolution on freshwater bioassessments using benthic macroinvertebrates." Environmental Reviews 16, NA (2008): 45–69. http://dx.doi.org/10.1139/a07-010.

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Changing the taxonomic scale of a biotic-assemblage dataset influences our ability to detect ecological patterns. In bioassessments, a test-site’s biological community is compared against a benchmark to indicate ecosystem condition, but the taxonomic resolution needed to judge impairment reliably is the subject of much scientific debate. This paper reviews taxonomic sufficiency for freshwater benthic-macroinvertebrate bioassessments. Three main issues are discussed: (1) the ecological significance of different taxonomic aggregations; (2) trade-offs involving taxonomic detail and information co

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STRIBLING, JAMES, BERNARD SWEENEY, JOHN MORSE, et al. "“Taxonomic certification versus the scientific method”: a rebuttal of Rogers (2012)." Zootaxa 3359, no. 1 (2012): 65. http://dx.doi.org/10.11646/zootaxa.3359.1.6.

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We read with great interest the correspondence article entitled “Taxonomic certification versus the scientific method” (Rogers 2012), and, as members of the Taxonomic Certification Committee of the Society for Freshwater Science (formerly, the North American Benthological Society [NABS, 1975–2011]) (SFS-TCC 2012), we agreed to respond in a constructive fashion with factual information to correct and provide perspective for a few errors, unfounded and confused assumptions, and misperceptions it presents. The nature and structure of the article and its title requires that our response be segrega

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Nikolaichuk, О. А., and O. О. Tryhub. "METHODOLOGICAL APPROACH TO ASSESSING RESTAURANT BUSINESS ENTITIES DEVELOPMENT MANAGEMENT USING THE TAXONOMIC ANALYSIS METHOD." Visnyk of Donetsk National University of Economics and Trade named after Mykhailo Tugan-Baranovsky, no. 1(80) (2024) (June 30, 2024): 31–40. http://dx.doi.org/10.33274/2079-4819-2024-80-1-31-40.

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Objective. The objective of the study is to substantiate a methodical approach to the assessment of management of the development of restaurant business entities applying the method of taxonomic analysis. Methods. The research methods are the dialectical method of scientific knowledge, systematization, generalization and decomposition (for the analysis of the methodological foundations of the evaluation of the management of the development of restaurant establishments, the justification of the methodical approach to the evaluation of the management of the development of restaurant business ent

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Baklaeva, Natal'ya M. "APPLICATION OF THE TAXONOMIC METHOD IN THE FINANCIAL ANALYSIS OF THE ACTIVITIES OF COMMERCIAL ORGANIZATIONS." EKONOMIKA I UPRAVLENIE: PROBLEMY, RESHENIYA 8/1, no. 128 (2022): 84–92. http://dx.doi.org/10.36871/ek.up.p.r.2022.08.01.011.

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The article discusses the essence of taxonomy, the possibility of using the taxonomic method when conducting a financial analysis of the activities of commercial organizations, gives an algorithm for calculating the integral taxonomic indicator, and also identifies the advantages of the method. The results of the study showed that the taxonomic method allows you to streamline multidimensional objects or processes and, on this basis, calculate a single integral indicator, which allows analysts to make an unambiguous conclusion about the current financial situation in the organization and more a

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Chen, Shi-Yi, Feilong Deng, Ying Huang, Xianbo Jia, Yi-Ping Liu, and Song-Jia Lai. "bioOTU: An Improved Method for Simultaneous Taxonomic Assignments and Operational Taxonomic Units Clustering of 16s rRNA Gene Sequences." Journal of Computational Biology 23, no. 4 (2016): 229–38. http://dx.doi.org/10.1089/cmb.2015.0214.

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del Castillo Agudo, Lucas, Almudena Nieto Soria, and Rafael Sentandreu. "A method for taxonomic determination ofCandida albicans with DNA probes." Current Microbiology 26, no. 1 (1993): 57–60. http://dx.doi.org/10.1007/bf01577244.

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Ban Kirigin, Tajana, Sanda Bujačić Babić, and Benedikt Perak. "Graph-Based Taxonomic Semantic Class Labeling." Future Internet 14, no. 12 (2022): 383. http://dx.doi.org/10.3390/fi14120383.

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We present a graph-based method for the lexical task of labeling senses of polysemous lexemes. The labeling task aims at generalizing sense features of a lexical item in a corpus using more abstract concepts. In this method, a coordination dependency-based lexical graph is first constructed with clusters of conceptually associated lexemes representing related senses and conceptual domains of a source lexeme. The label abstraction is based on the syntactic patterns of the x is_a y dependency relation. For each sense cluster, an additional lexical graph is constructed by extracting label candida

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MAGALHAES, IVAN L. F. "Spreadsheets to expedite taxonomic publications by automatic generation of morphological descriptions and specimen lists." Zootaxa 4624, no. 1 (2019): 147–50. http://dx.doi.org/10.11646/zootaxa.4624.1.12.

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It is now generally accepted that we are going through a major mass extinction event that is causing biodiversity loss at alarming rates (Barnosky et al. 2011). We also know that many species remain to be formally described (e.g. Huber 2014), and concerns have been raised as to whether we will be able to document these before they go extinct (Costello et al. 2013). On one hand, the number of recognized species increases exponentially (e.g. Agnarsson et al. 2013; Sangster & Luksenburg 2015). On the other, taxonomic descriptions are becoming more complete and detailed, which is necessarily m

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Zubor, Ákos, Zsuzsa K. Szabó, Antónia Nyakas, Mária Papp, and József Prokisch. "Introduction of DNA-based Methods to Agriculture Through Molecular Taxonomic Examination of Poa Species." Acta Agraria Debreceniensis, no. 16 (December 6, 2005): 139–42. http://dx.doi.org/10.34101/actaagrar/16/3302.

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biological methods, one among them is AFLP that is well applicable for taxonomic research. Bluegrass species, that are important components of meadow associations, thus their thorough knowledge is necessary in maintaining biodiversity, were examined with bringing this method to perfection.Taxonomic relationship of the members of Poa pratensis aggregation is a controversial issue. Present study aimes to identify the members of this group, with a developed AFLP method through molecular taxonomic examination of Poa species in meadows nearby Debrecen, revealing their genetical distances. Species o

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Alroy, John. "Appearance event ordination: a new biochronologic method." Paleobiology 20, no. 2 (1994): 191–207. http://dx.doi.org/10.1017/s0094837300012677.

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The fundamental goal of biochronology is ordering taxonomic first and last appearance events. The most useful biochronologic data are of the form “the first appearance event of one taxon predates the last appearance event of a second taxon” (FAE < LAE). FAE < LAE data sets are unusually reliable because they converge on a unique solution with greater sampling. The fact that the FAE of one taxoni< the LAE of another taxonjalways can be inferred either ifiis found lower thanjin a stratigraphic section, or ifiandjco-occur in at least one taxonomic list. Thus, FAE < LAE data accurately

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Young, Catherine, Axel Hausmann, Sławomir Kuczkowski, Klaus Schönitzer, and Marius Junker. "Enzymatic digestion – a new method for egg extraction from dry female collection specimens (Lepidoptera: Geometridae)." Insect Systematics & Evolution 37, no. 3 (2006): 351–59. http://dx.doi.org/10.1163/187631206788838608.

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AbstractEggs suitable for taxonomic study can be yielded from dry female collection specimens by enzymatic digestion of the abdomen. This method had been proposed recently by Knölke et al. (2005) for obtaining DNA for sequence analysis and maceration of tissues for the preparation of genitalia. Hence, enzymatic digestion can provide, simultaneously, three completely different data sets for taxonomic and phylogenetic studies from dry female collection specimens. We used protease K (PK) to macerate the abdomens of and to extract eggs from 67 dried female moths of 20 species (Lepidoptera: Geometr

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DA SILVA SOVANO, RAFAEL S., ANA LÚCIA NUNES GUTJAHR, and JOSÉ WELLINGTON DE MORAIS. "Solving taxonomic Orthoptera problems by Near Infrared Reflectance Spectroscopy (NIRS): the case of Aganacris Walker, 1871 (Tettigoniidae: Phaneropterinae; Scudderini)." Zootaxa 4461, no. 3 (2018): 445. http://dx.doi.org/10.11646/zootaxa.4464.3.10.

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Over the last 50 years, the genus Aganacris has undergone several taxonomic changes. In this study, an infrared spectrum analysis as a complementary and alternative analysis method was carried out for 112 Aganacris specimens belonging to five species. Significant differences were observed between males and females of the species, thus taking into account a new taxonomic status for the genus and the revalidation of Aganacris sphex (Rehn) stat. rev. The ability of Near Infrared Reflectance Spectroscopy (NIRS) to reproduce phenotypic (intra and interspecific) patterns in Aganacris populations was

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Coddington, Jonathan A., Ingi Agnarsson, Ren-Chung Cheng, et al. "DNA barcode data accurately assign higher spider taxa." PeerJ 4 (July 20, 2016): e2201. http://dx.doi.org/10.7717/peerj.2201.

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The use of unique DNA sequences as a method for taxonomic identification is no longer fundamentally controversial, even though debate continues on the best markers, methods, and technology to use. Although both existing databanks such as GenBank and BOLD, as well as reference taxonomies, are imperfect, in best case scenarios “barcodes” (whether single or multiple, organelle or nuclear, loci) clearly are an increasingly fast and inexpensive method of identification, especially as compared to manual identification of unknowns by increasingly rare expert taxonomists. Because most species on Earth

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Victor, Janine E., Gideon F. Smith, and Wyk Abraham E. Van. "A method for establishing taxonomic research priorities in a megadiverse country." Phytotaxa 203, no. 1 (2015): 55–62. https://doi.org/10.11646/phytotaxa.203.1.5.

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Victor, Janine E., Smith, Gideon F., Van Wyk, Abraham E. (2015): A method for establishing taxonomic research priorities in a megadiverse country. Phytotaxa 203 (1): 55-62, DOI: 10.11646/phytotaxa.203.1.5, URL: http://dx.doi.org/10.11646/phytotaxa.203.1.5

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Kazachenko, Oleksandr V., Olesia K. Vasyliaka, Larysa V. Chornozub, and Olha M. Musychenko. "Taxonomy of compulsory and incentive legal consequences (legal measures) of committing illegal acts." Cuestiones Políticas 38, Especial II (2020): 151–68. http://dx.doi.org/10.46398/cuestpol.382e.11.

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The article is prepared for the purpose of publishing the results of scientific research obtained in the process of applying the taxonomic methodology for systematization of measures of legal influence. The methodology used the approaches of philosophical and legal theorization, a dog and systemic functional. One way of conclusion is proposed for the first time to use the taxonomies of legal measures. The study highlighted three aspects of legal measures: relational, predicate and functional. The relational manifestation of taxonomy allowed to identify the substrate of the external form of leg

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Hozer-Koćmiel, Marta, and Christian Lis. "Examining similarities in time allocation amongst European Countries." Statistics in Transition new series 17, no. 2 (2016): 317–30. http://dx.doi.org/10.59170/stattrans-2016-018.

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The aim of the article is to analyse the similarities between the selected European countries in terms of time allocation. Time allocation has been defined as the daily distribution of time to various activities. Professional work time, domestic work time and leisure time are the most important for the economic approach. It has been proved that there are coherent groups of countries with similar structure of time allocation. The taxonomic methods used in order to verify the thesis included: cluster analysis, k-means method, generalised distance measure GDM and interval taxonomic method TMI. Th

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Αθανασίου, Α. "ΒΙΟΣΤΡΩΜΑΤΟΓΡΑΦΙΚΗ ΣΗΜΑΣΙΑ ΤΗΣ ΔΟΜΗΣ ΤΩΝ ΑΠΟΛΙΘΩΜΕΝΩΝ ΧΑΥΛΙΟΔΟΝΤΩΝ". Bulletin of the Geological Society of Greece 39, № 1 (2006): 9. http://dx.doi.org/10.12681/bgsg.18440.

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Fossil elephants of Eurasia are very useful for biostratigraphical correlations, as they were widespread geographically and they are generally common and well preserved as fossils. A relatively new method that contributes to the taxonomic identification of proboscidean tusks is the study of their microstructure, as it is expressed in their Schreger pattern. This pattern is characteristic of the proboscidean dentine. It is visible in tusk cross sections as intersecting spiral lines. The method can be applied in small, otherwise not determinable, tusk fragments to help with their taxonomic ident

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Kowal, Tadeusz. "The role of the number of characters in distinguishing taxa in taxonomic investigations performed by the dendrite method." Acta Societatis Botanicorum Poloniae 42, no. 1 (2015): 103–19. http://dx.doi.org/10.5586/asbp.1973.006.

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The author presents a new conception of distinguishing taxonomic units, while taking into .account a precise class of characters, It is shown on the taxonomy of species of <i>Delia</i> Dum., <i>Spergula</i> L., and <i>Spergularia</i> Presl., growning in Poland and based on the interpretation of the dendrite in the author's taxonomic investigations.

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Ko, Kwang-Chool. "TAXONOMIC STUDIES ON CULTIVATED AND KOREAN NATIVE GENUS PYRUS PLANTS BY MULTIVARIATE AND ISOZYME ANALYSIS." HortScience 27, no. 6 (1992): 646g—647. http://dx.doi.org/10.21273/hortsci.27.6.646g.

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Fifty nine morphological characters and isozyme band patterns of glutamate oxaloacetate transminase, peroxidase, glucose phosphate isomerase from fully expanded leaves were used for taxonomic study on 51 taxa consisted of Korean native and principal cultivars of the genus Pyrus. Taxonomic relationships were analyzed by complete cluster analysis method based on Euclidean taxonomic distance of IBM PC SPSS/PC+(ver. 3.0). Among the 39 qualitative morphological characters, a great deal of variations among 51 taxa were observed in immature fruit shape, skin lusterness, hair density on pedicel, anthe

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Read, Dwight W., and Glenn Russell. "A Method for Taxonomic Typology Construction and an Example: Utilized Flakes." American Antiquity 61, no. 4 (1996): 663–84. http://dx.doi.org/10.2307/282010.

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This paper considers problems inherent in constructing typologies based on subdividing artifacts using clustering algorithms that assume a paradigmatic structure (as do most, if not all, currently used algorithms) and presents an alternative method based on a taxonomic, rather than a paradigmatic, structure for the artifact classes. The method is exemplified by analysis of an assemblage of utilized flakes from a series of late prehistoric habitation sites in the central highlands of Peru. These flakes were previously analyzed using more intuitive, traditional methods but without identifying an

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Ghosh, Tarini, Monzoorul Haque M, and Sharmila S. Mande. "DiScRIBinATE: a rapid method for accurate taxonomic classification of metagenomic sequences." BMC Bioinformatics 11, Suppl 7 (2010): S14. http://dx.doi.org/10.1186/1471-2105-11-s7-s14.

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Nakano, Masahiro, Kazumasa Fukuda, and Hatsumi Taniguchi. "Appropriate probe search method to specify groups in higher taxonomic ranks." Journal of Basic Microbiology 49, no. 1 (2008): 100–108. http://dx.doi.org/10.1002/jobm.200800211.

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Stribling, James, Bernard Sweeney, John Morse, et al. ""Taxonomic certification versus the scientific method": a rebuttal of Rogers (2012)." Zootaxa 3359, no. 1 (2012): 65–68. https://doi.org/10.11646/zootaxa.3359.1.6.

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Stribling, James, Sweeney, Bernard, Morse, John, Corkum, Gail, Lester, Gary, Miller, Scott, Mitchell, Richard, Poulton, Barry, Strachan, Stephanie, Wetzel, Mark (2012): "Taxonomic certification versus the scientific method": a rebuttal of Rogers (2012). Zootaxa 3359 (1): 65-68, DOI: 10.11646/zootaxa.3359.1.6, URL: https://biotaxa.org/Zootaxa/article/view/zootaxa.3359.1.6

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Góes-Neto, Aristóteles, Marcelo V. C. Diniz, Daniel S. Carvalho, et al. "Comparison of complex networks and tree-based methods of phylogenetic analysis and proposal of a bootstrap method." PeerJ 6 (February 9, 2018): e4349. http://dx.doi.org/10.7717/peerj.4349.

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Complex networks have been successfully applied to the characterization and modeling of complex systems in several distinct areas of Biological Sciences. Nevertheless, their utilization in phylogenetic analysis still needs to be widely tested, using different molecular data sets and taxonomic groups, and, also, by comparing complex networks approach to current methods in phylogenetic analysis. In this work, we compare all the four main methods of phylogenetic analysis (distance, maximum parsimony, maximum likelihood, and Bayesian) with a complex networks method that has been used to provide a

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Andreyeva, Elena A., Elmira I. Nazmieva, and Valentina M. Nasrtdinova. "Taxonomy of Values and Anti-Values: the Material of the Russian and German Phraseology." Journal of History Culture and Art Research 6, no. 5 (2017): 301. http://dx.doi.org/10.7596/taksad.v6i5.1251.

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<p>At present, in terms of intercultural communication, the role of the axiological aspect in teaching foreign languages is growing. When thinking about the values and anti-values in the phraseology of Russian and German it is advisable to take into account their hierarchy which can be presented as the axiological scale. This investigation benefits from the following methods: axiological linguistic method, method of cognitive analysis, comparative method, processing of lexicographical sources. The result of the study is formation of the axiological scale and development on its basis of t

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Qiu, Shuting, Jillian Lean Sim Ooi, Weilin Chen, et al. "Heterogeneity of Fish Taxonomic and Functional Diversity Evaluated by eDNA and Gillnet along a Mangrove–Seagrass–Coral Reef Continuum." Animals 13, no. 11 (2023): 1777. http://dx.doi.org/10.3390/ani13111777.

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The effective and reliable monitoring of fish communities is important for the management and protection of marine ecosystems. Environmental DNA (eDNA) metabarcoding is a relatively new method that has been widely used in recent years, while traditional sampling via fish catching (i.e., gillnets) is one of the most common and reliable fish monitoring methods used to date. We compared the taxonomic and functional diversity of fish detected within a mangrove–seagrass–coral reef continuum using both survey methods. One liter seawater and gillnet samples were collected in August 2021 from mangrove

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Makowska, Anita. "Identification of New Urban Centers by Using Taxonomic Methods." Folia Oeconomica Stetinensia 19, no. 1 (2019): 56–72. http://dx.doi.org/10.2478/foli-2019-0005.

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Abstract Research background: In recent years, the return of city and suburbs dwellers to city centers has been observed. This phenomenon is caused in particular by the growing costs of transport and time spent on commuting. From this point of view, it seems interesting to observe the prices of properties located in the suburbs in relation to the prices of properties located around city centers and to examine their similarity. The center, however, should not be identified solely as the Old Town but rather as a certain area in which the professional, cultural and private life of the citizens is

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Lin, Ying-Chih. "A New Binning Method for Metagenomics by One-Dimensional Cellular Automata." International Journal of Genomics 2015 (2015): 1–6. http://dx.doi.org/10.1155/2015/197895.

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More and more developed and inexpensive next-generation sequencing (NGS) technologies allow us to extract vast sequence data from a sample containing multiple species. Characterizing the taxonomic diversity for the planet-size data plays an important role in the metagenomic studies, while a crucial step for doing the study is thebinningprocess to group sequence reads from similar species or taxonomic classes. The metagenomic binning remains a challenge work because of not only the various read noises but also the tremendous data volume. In this work, we propose an unsupervised binning method f

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Mcbratney, AB. "Allocation of new individuals to continuous soil classes." Soil Research 32, no. 4 (1994): 623. http://dx.doi.org/10.1071/sr9940623.

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Objective methods of identification of unknown objects are reviewed briefly. Particular emphasis is given to diagnostic keys, diagnostic tables and taxonomic distance. A method for allocating new individuals to continuous soil classes is presented and detailed examples given. This method is compared with more conventional methods of soil identification.

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Tuan, Luu Anh, Siu Cheung Hui, and See Kiong Ng. "Utilizing Temporal Information for Taxonomy Construction." Transactions of the Association for Computational Linguistics 4 (December 2016): 551–64. http://dx.doi.org/10.1162/tacl_a_00117.

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Taxonomies play an important role in many applications by organizing domain knowledge into a hierarchy of ‘ is-a’ relations between terms. Previous work on automatic construction of taxonomies from text documents either ignored temporal information or used fixed time periods to discretize the time series of documents. In this paper, we propose a time-aware method to automatically construct and effectively maintain a taxonomy from a given series of documents preclustered for a domain of interest. The method extracts temporal information from the documents and uses a timestamp contribution funct

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Rougerie, Rodolphe, Thibaud Decaëns, Louis Deharveng, et al. "DNA barcodes for soil animal taxonomy." Pesquisa Agropecuária Brasileira 44, no. 8 (2009): 789–802. http://dx.doi.org/10.1590/s0100-204x2009000800002.

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The biodiversity of soil communities remains very poorly known and understood. Soil biological sciences are strongly affected by the taxonomic crisis, and most groups of animals in that biota suffer from a strong taxonomic impediment. The objective of this work was to investigate how DNA barcoding - a novel method using a microgenomic tag for species identification and discrimination - permits better evaluation of the taxonomy of soil biota. A total of 1,152 barcode sequences were analyzed for two major groups of animals, collembolans and earthworms, which presented broad taxonomic and geograp

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Hong Doan, Phuoc Thi, Ngamnij Arch-int, and Somjit Arch-int. "A Semantic Framework for Extracting Taxonomic Relations from Text Corpus." International Arab Journal of Information Technology 17, no. 3 (2019): 325–37. http://dx.doi.org/10.34028/iajit/17/3/6.

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Nowadays, ontologies have been exploited in many current applications due to the abilities in representing knowledge and inferring new knowledge. However, the manual construction of ontologies is tedious and time-consuming. Therefore, the automated ontology construction from text has been investigated. The extraction of taxonomic relations between concepts is a crucial step in constructing domain ontologies. To obtain taxonomic relations from a text corpus, especially when the data is deficient, the approach of using the web as a source of collective knowledge (a.k.a web-based approach) is usu

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Foote, Mike. "Estimating taxonomic durations and preservation probability." Paleobiology 23, no. 3 (1997): 278–300. http://dx.doi.org/10.1017/s0094837300019692.

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Paleontological completeness and stratigraphic ranges depend on extinction rate, origination rate, preservation rate, and the length of the interval of time over which observations can be made. I derive expressions for completeness and the distribution of durations and ranges as functions of these parameters, considering both continuous- and discrete-time models.Previous work has shown that, if stratigraphic ranges can be followed indefinitely forward, and if extinction and preservation occur at stochastically constant rates, then extinction rate and preservability can be estimated from (1) di

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Yasanthika, W.A.E., K.W.T. Chethana, D.N. Wanasinghe, D.S. Tennakoon, F. Al Otibi, and K.D. Hyde. "Taxonomic novelties of soil-inhabiting pleosporalean fungi in Thailand using baiting method." Phytotaxa 676, no. 1 (2024): 1–24. https://doi.org/10.11646/phytotaxa.676.1.1.

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Yasanthika, W.A.E., Chethana, K.W.T., Wanasinghe, D.N., Tennakoon, D.S., Otibi, F. Al-, Hyde, K.D. (2024): Taxonomic novelties of soil-inhabiting pleosporalean fungi in Thailand using baiting method. Phytotaxa 676 (1): 1-24, DOI: 10.11646/phytotaxa.676.1.1, URL: https://doi.org/10.11646/phytotaxa.676.1.1

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