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Journal articles on the topic 'Taxonomoy'

Author: Grafiati

Published: 2 June 2025

Last updated: 31 July 2025

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1

Devesa Alcaraz, Juan Antonio, Gloria Martínez-Sagarra, and Emma Ortúñez. "Sobre el status taxonómico de Festuca cordubensis Devesa." Acta Botanica Malacitana 44 (September 23, 2019): 89–91. http://dx.doi.org/10.24310/abm.v44i0.6774.

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2

Romero-Zarco, Carlos, and Llorenç Sáez Goñalons. "Notas taxonómicas sobre el género Avellinia Parl. (Poaceae: Poeae: Aveninae)." Acta Botanica Malacitana 43 (December 5, 2018): 167–69. http://dx.doi.org/10.24310/abm.v43i0.5341.

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3

Quintanar, Alejandro, Santiago Castroviejo, and Ana Teresa Romero García. "Apuntes taxonómicos sobre el género Koeleria Pers. (Gramineae) en Andalucía Oriental." Acta Botanica Malacitana 32 (December 1, 2007): 289–98. http://dx.doi.org/10.24310/abm.v32i0.7112.

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4

Mol, Solange Maria, and Daniel Abud Seabra Matos. "Uma análise sobre a Taxonomia SOLO: aplicações na avaliação educacional." Estudos em Avaliação Educacional 30, no. 75 (2020): 722. http://dx.doi.org/10.18222/eae.v30i75.6593.

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<p>Os objetivos desta pesquisa são apresentar a Taxonomia SOLO como instrumento metodológico na avaliação educacional e realizar uma revisão da literatura sobre o uso dessa na avaliação educacional no Brasil. A SOLO é uma taxonomia cognitiva composta por cinco níveis que crescem em complexidade: 1) pré-estrutural; 2) uniestrutural; 3) multiestrutural; 4) relacional; e 5) abstrato estendido. Esses níveis são subdivididos em duas categorias de aprendizagem: superficial e profunda. A SOLO apresenta muitas aplicações: avaliação de sala de aula, avaliação externa, formação de professores, ela

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Santos, Daniella Soares dos, Simone Roque Mazoni, and Emília Campos de Carvalho. "Emprego da taxonomia da nanda no Brasil: revisão integrativa." Revista de Enfermagem UFPE on line 3, no. 1 (2008): 152. http://dx.doi.org/10.5205/reuol.286-1620-2-rv.0301200922.

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ABSTRACTObjectives: to identify and to classify the studies developed in Brazil that had used in the practical assistential the Taxonomy of the NANDA. Method: integrative review of the literature, carried through in the databases LILACS and MEDLINE, using itself the word-key Taxonomy and NANDA, being selected studies with summary, published in Brazil and that presented the practical application of the taxonomy. Results: of the 46 selected studies, 80.4% had been developed in the clinical area and excessively in the surgical area. It had predominance of prospectives studies in the hospital scen

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6

Thulborn, Tony. "Taxonomy: Taxonomic tangles from Australia." Nature 321, no. 6065 (1986): 13–14. http://dx.doi.org/10.1038/321013a0.

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7

Dubois, Alain. "Taxonomy in the century of extinctions: taxonomic gap, taxonomic impediment, taxonomic urgency." TAPROBANICA: The Journal of Asian Biodiversity 2, no. 1 (2011): 1. http://dx.doi.org/10.4038/tapro.v2i1.2702.

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Dubois, Alain. "EDITORIAL : Taxonomy in the century of extinctions : taxonomic gap, taxonomic impediment, taxonomic urgency." Taprobanica 2, no. 1 (2010): 1–5. http://dx.doi.org/10.47605/tapro.v2i1.23.

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9

Patterson, David J., David Remsen, William A. Marino, and Cathy Norton. "Taxonomic Indexing—Extending the Role of Taxonomy." Systematic Biology 55, no. 3 (2006): 367–73. http://dx.doi.org/10.1080/10635150500541680.

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Young, Jeremy R., and Jere H. Lipps. "Taxonomy and taxonomic appendices in Marine Micropaleontology." Marine Micropaleontology 29, no. 3-4 (1997): 173–74. http://dx.doi.org/10.1016/s0377-8398(96)00056-4.

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11

VICTOR, JANINE E., GIDEON F. SMITH, and ABRAHAM E. VAN WYK. "History and drivers of plant taxonomy in South Africa." Phytotaxa 269, no. 3 (2016): 193. http://dx.doi.org/10.11646/phytotaxa.269.3.3.

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The development of plant taxonomy in South Africa from about 1600 to 2015 is reviewed, with emphasis on the main driving factors that have influenced the research direction, techniques used, and choice of taxonomic research topic. In addition, key personalities and important historical events are highlighted. The early scientific interest in the flora of South Africa and, by implication, its taxonomy was initially driven by curiosity. Exploration of plants for economic purposes especially for medicinal use and later, agriculture, drove the scientific development of botany and formed the founda

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12

Rees, Jonathan, and Karen Cranston. "Automated assembly of a reference taxonomy for phylogenetic data synthesis." Biodiversity Data Journal 5 (May 22, 2017): e12581. https://doi.org/10.3897/BDJ.5.e12581.

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Taxonomy and nomenclature data are critical for any project that synthesizes biodiversity data, as most biodiversity data sets use taxonomic names to identify taxa. Open Tree of Life is one such project, synthesizing sets of published phylogenetic trees into comprehensive summary trees. No single published taxonomy met the taxonomic and nomenclatural needs of the project. Here we describe a system for reproducibly combining several source taxonomies into a synthetic taxonomy, and we discuss the challenges of taxonomic and nomenclatural synthesis for downstream biodiversity projects.

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Castro-Souza, Rodrigo Antônio, Juliana Stropp, Luiz Felipe Moretti Iniesta, et al. "Mapping the status of global taxonomic knowledge of Orthoptera (Arthropoda, Insecta)." Frontiers of Biogeography 18 (May 13, 2025): e145455. https://doi.org/10.21425/fob.18.145455.

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The status of taxonomic knowledge varies across the Globe. Quantifying and mapping the geographic patterns of taxonomic status is essential to prioritise regions that require greater attention from the taxonomic community. Here, we compiled all valid orthopteran species names and their synonyms, extracted from the Catalogue of Life (CoL) and allocated them geographically, based on data from the Global Biodiversity Information Facility (GBIF) and the Orthoptera Species File (OSF). This allowed us to create measures of taxonomic effort, based on the date of species descriptions and the number of

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Petrović, Andjeljko. "Sizing the Knowledge Gap in Taxonomy: The Last Dozen Years of Aphidiinae Research." Insects 13, no. 2 (2022): 170. http://dx.doi.org/10.3390/insects13020170.

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Taxonomic impediment is one of the main roadblocks to managing the current biodiversity crisis. Insect taxonomy is the biggest contributor to the taxonomic impediment, both in terms of the knowledge gap and the lack of experts. With this study, we tried to size the knowledge gap by analyzing taxonomical studies on the subfamily Aphidiinae (Hymenoptera: Braconidae) conducted from 2010 to 2021. All available taxonomic knowledge gathered in this period is critically summarized: newly described species, detection of alien species, published identification keys, etc. All findings are discussed rela

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15

Vernon, Keith. "A truly taxonomic revolution? Numerical taxonomy 1957–1970." Studies in History and Philosophy of Science Part C: Studies in History and Philosophy of Biological and Biomedical Sciences 32, no. 2 (2001): 315–41. http://dx.doi.org/10.1016/s1369-8486(01)00007-3.

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16

Hoffman, Joel Christopher, Christy Meredith, Erik Pilgrim, et al. "Comparison of larval fish detections using morphology-based taxonomy versus high-throughput sequencing for invasive species early detection." Canadian Journal of Fisheries and Aquatic Sciences 78, no. 6 (2021): 752–64. http://dx.doi.org/10.1139/cjfas-2020-0224.

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When first introduced, invasive species typically evade detection; DNA barcoding coupled with high-throughput sequencing (HTS) may be more sensitive and accurate than morphology-based taxonomy and thereby improve invasive (or rare) species detection. We quantified the relative error of species detection between morphology-based and HTS-based taxonomic identification of ichthyoplankton collections from the Port of Duluth, Minnesota, an aquatic non-native species introduction “hot-spot” in the Laurentian Great Lakes. We found HTS-based taxonomy identified 28 species and morphology-based taxonomy

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Bourgoin, Thierry, Lebbe Régine Vignes, and Nicolas Bailly. "Visualisation of Taxonomic Knowledge: Exploring and reporting taxonomic data, training students in taxonomy." Biodiversity Information Science and Standards 3 (July 2, 2019): e37730. https://doi.org/10.3897/biss.3.37730.

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Taxon concepts are complex, dynamic representations of the real world that are labelled with scientific names designating them. While names, taxa and classifications should be managed separately in databases (Bourgoin et al. 2019, Gallut et al. 2005), students may have difficulty comprehending the dynamic nature of the link between the three entities because taxa circumscriptions are complex to apprehend through textual representation and because names are independently ruled by nomenclatural codes. Exploring, reporting and training users about taxonomic knowledge are complex challenges that c

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18

Sánchez-Hernández, Javier. "Taxonomy-based differences in feeding guilds of fish." Current Zoology 66, no. 1 (2019): 51–56. http://dx.doi.org/10.1093/cz/zoz015.

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Abstract It has been taken for granted that feeding guilds and behavior in animals are linked to the taxonomic relatedness of species, but empirical evidence supporting such relationship is virtually missing. To examine the importance of taxonomy on trophic ecology, I here present the first well-resolved dietary taxonomy analysis based on feeding guilds (predation, herbivory, and filtering) among families and genera within the fish order Perciformes. Taxonomic relatedness in feeding did not vary with ecosystem dimension (marine vs. freshwater). Although predation dominates among Perciformes fi

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19

Marumo, Marumo Kedumetse. "The second Symposium held in February 2018 under the theme “Biodiversity Management - A Strategy for Sustainable Development and Climate Change Adaptation and Mitigation”." Botswana Journal of Agriculture and Applied Sciences 13, no. 2 (2019): ii. http://dx.doi.org/10.37106/bojaas.2019.41.

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The Global Taxonomy Initiative (GTI) was developed by governments through the Convention on Biological Diversity (CBD) after acknowledging the existence of taxonomic impediment to the sound management of biodiversity. The main aim of the strategy is to develop the human resources and infrastructure necessary to generate, disseminate and use taxonomic knowledge and information in a manner that assists parties in effectively implementing the convention. The National Taxonomy Committee (NTC) is a committee mandated to drive the Global Taxonomy Initiative programme of work in Botswana.

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20

Maghfiroh, Rodiatul, Abdul Malik Karim Amrullah, Wahidmurni Wahidmurni, and Mohammad Shohibul Anwar. "Analisis Latihan Soal Bahasa Arab pada Buku Ajar Mahir fi Lughoh Arabiyah Perspektif Taksonomi Bloom." Al-Lahjah: Jurnal Pendidikan, Bahasa Arab, dan Kajian Linguistik Arab 7, no. 1 (2024): 29–36. http://dx.doi.org/10.32764/allahjah.v7i1.3767.

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This study aims to analyze the practice questions contained in the textbook "Mahir fi Lughoh Arabiyah" using Bloom's taxonomic approach. This approach is used to evaluate the level of thinking and understanding of students tested through practice questions. The analysis method is carried out by categorizing the problems in the textbook into six levels of Bloom's taxonomy, namely knowledge, understanding, application, analysis, synthesis, and evaluation. The results of the analysis show that the textbook "Mahir fi Lughoh Arabiyah" has successfully implemented Bloom's taxonomic approach well. Th

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21

Jordal, Bjarte, Sarah Smith, and Anthony Cognato. "Classification of weevils as a data-driven science: leaving opinion behind." ZooKeys 439 (September 8, 2014): 1–18. https://doi.org/10.3897/zookeys.439.8391.

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Data and explicit taxonomic ranking criteria, which minimize taxonomic change, provide a scientific approach to modern taxonomy and classification. However, traditional practices of opinion-based taxonomy (i.e., mid-20th century evolutionary systematics), which lack explicit ranking and naming criteria, are still in practice despite phylogenetic evidence. This paper discusses a recent proposed reclassification of weevils that elevates bark and ambrosia beetles (Scolytinae and Platypodinae) to the ranks of Family. We demonstrate that the proposed reclassification 1) is not supported by an evolu

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22

Chamberlain, Scott. "The Taxonomic and Biodiversity Software Stack in R." Biodiversity Information Science and Standards 1 (August 12, 2017): e20219. https://doi.org/10.3897/tdwgproceedings.1.20219.

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High quality R software for taxonomy and biodiversity occurrence data are important, both because there are a large number of biologists who use R, and because R allows reproducible and open science. I will do an overview of the software that our non-profit organization rOpenSci (https://ropensci.org) produces for both taxonomy and biodiversity work, their use cases, and future improvements. In addition, I will provide details about our latest work on software that defines taxonomic classes for consistent and powerful manipulations of taxonomic data (for example, select certain taxonomic names

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23

SAUNDERS, THOMAS E. "Taxonomy at a crossroads: Communicating value, building capability, and seizing opportunities for the future." Megataxa 1, no. 1 (2020): 63–66. http://dx.doi.org/10.11646/megataxa.1.1.13.

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I believe the top three questions facing taxonomy today all relate to the health and future of the discipline itself. 1. How do we ensure taxonomy is valued? 2. How do we build and maintain taxonomic capability? 3. How do we ensure taxonomy benefits from emerging opportunities?

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24

Thiele, Kevin R., Mark S. Harvey, Pat Hutchings, Tom W. May, Jane Melville, and Kenny J. Travouillon. "Introducing the Australian Journal of Taxonomy, a new, fully-online, fully open-access journal for the rapid publication of new Australian species and other taxa." Australian Journal of Taxonomy 1 (May 11, 2022): 1–7. http://dx.doi.org/10.54102/ajt.qxi3r.

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With this paper we introduce the Australian Journal of Taxonomy and outline its scope, rationale, workflow and governance. The journal is published by Taxonomy Australia, a national collaboration by the Australian taxonomic community. Australian Journal of Taxonomy is one of the world's first fully-online journals. Papers are born-digital and born-online: they are authored on the Australian Journal of Taxonomy online platform, and all subsequent steps (peer-review, editing, copy editing and publication) take place on that platform. At no stage does a paper in Australian Journal of Taxonomy nee

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25

Wheeler, Quentin D. "Taxonomic triage and the poverty of phylogeny." Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences 359, no. 1444 (2004): 571–83. http://dx.doi.org/10.1098/rstb.2003.1452.

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Revisionary taxonomy is frequently dismissed as merely descriptive, which belies its strong intellectual content and hypothesis–driven nature. Funding for taxonomy is inadequate and largely diverted to studies of phylogeny that neither improve classifications nor nomenclature. Phylogenetic classifications are optimal for storing and predicting information, but phylogeny divorced from taxonomy is ephemeral and erodes the accuracy and information content of the language of biology. Taxonomic revisions and monographs are efficient, high–throughput species hypothesis–testing devices that are ideal

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Ji, Yunheng, Zhiwei Yang, Xinqi Zhang, and Shengji Pei. "The Crucial Role of Plant Taxonomy in Ensuring the Biodiversity Sustainability: Insights from the Pharmaceutically Significant Genus Paris (Melanthiaceae)." Taxonomy 5, no. 2 (2025): 32. https://doi.org/10.3390/taxonomy5020032.

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Taxonomy, primarily focused on systematically exploring, documenting, and characterizing global or regional biodiversity, represents a fundamental scientific discipline for biodiversity conservation and sustainability. However, it has encountered significant developmental constraints and academic marginalization in recent decades, resulting in a notable decline in proficient taxonomists as well as substantial gaps in taxonomic knowledge. In order to call for widespread attention and recognition of the increasing demands to revitalize and advance taxonomy, this article presents a comprehensive

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Bénichou, Laurence, Isabelle Gérard, Éric Laureys, and Michelle J. Price. "Consortium of European Taxonomic Facilities (CETAF) best practices in electronic publishing in taxonomy." European Journal of Taxonomy 475 (November 13, 2018): 1–37. https://doi.org/10.5852/ejt.2018.475.

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Bénichou, Laurence, Gérard, Isabelle, Laureys, Éric, Price, Michelle J. (2018): Consortium of European Taxonomic Facilities (CETAF) best practices in electronic publishing in taxonomy. European Journal of Taxonomy 475: 1-37, DOI: 10.5852/ejt.2018.475

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28

Stovell, Beth, and Matthew Morris. "Taxonomic Theology: An Interdisciplinary Approach to a Biblical and Biological Theology of Naming." Perspectives on Science and Christian Faith 74, no. 4 (2022): 194–211. http://dx.doi.org/10.56315/pscf12-22stovell.

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Taxonomic theology couples a biblical theology of naming with the science of taxonomy to highlight resonances between these disciplines while encouraging fruitful avenues of ethical and theological exploration around the naming of living things. Categories of discussion include the creative, relational, and protective aspects of taxonomy, embedded in a biblical theology of image, stewardship, worship, and blessing. Taxonomic theology offers insights for the taxonomist, the theologian, and the Church as a way to move from theory to practice.

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Pires, Amanda Ciprandi, and Luciane Marinoni. "DNA barcoding and traditional taxonomy unified through Integrative Taxonomy: a view that challenges the debate questioning both methodologies." Biota Neotropica 10, no. 2 (2010): 339–46. http://dx.doi.org/10.1590/s1676-06032010000200035.

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The taxonomic crisis, emphasized in recent years, is marked by the lack of popularity (lack of interest in taxonomy) and financial incentives to study biodiversity. This situation, coupled with the issues involved with the necessity of knowing many yet undiscovered species, has meant that new technologies, including the use of DNA, have emerged to revitalize taxonomy. Part of the scientific community, however, has rejected the use of these innovative ideas. DNA barcoding has especially been the target of numerous criticisms regarding its application, as opposed to the use of morphology. This p

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30

ZHANG, ZHI-QIANG. "Contributing to the progress of descriptive taxonomy." Zootaxa 1968, no. 1 (2008): 65–68. http://dx.doi.org/10.11646/zootaxa.1968.1.7.

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One of the fundamental quests of biology is discovering how many species inhabit the Earth. Yet the vast majority of the world’s animal species are waiting to be discovered, named and described—estimates of the total number vary from 5 to 30 million. Most biologists would agree that taxonomy is important and fundamental to credible biology, and descriptive taxonomy is the most important task of taxonomy (Wheeler 2007). Unfortunately, the reality is that descriptive taxonomy has been marginalized since the mid-1950s and has sustained serious losses in funding and academic positions in universit

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Tarkhnishvili, David. "Molecular Markers and Taxonomic Explosion in Herpetology: More or Less Robust Taxonomy? True and False Advantages of DNA Markers." International Journal of Zoology and Animal Biology 7, no. 2 (2024): 1–14. http://dx.doi.org/10.23880/izab-16000569.

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Despite the increasing deficit of taxonomic expertise, the number of newly described species since the early 2010s has grown exponentially. This growth is related to the increased use of DNA markers in taxonomic descriptions. However, routine use of DNA markers in taxonomy did not bring practical taxonomy closer to the theory. Species are unique lineages with irreversible evolutionary pathways, and only the presence of distinct populations within the same geographic range, or at least the presence of narrow hybrid zones between the parapatric ranges is a conclusive evidence of evolutionary irr

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32

Miralles, Aurélien, Teddy Bruy, Katherine Wolcott, et al. "Repositories for Taxonomic Data: Where We Are and What is Missing." Systematic Biology 69, no. 6 (2020): 1231–53. http://dx.doi.org/10.1093/sysbio/syaa026.

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Abstract Natural history collections are leading successful large-scale projects of specimen digitization (images, metadata, DNA barcodes), thereby transforming taxonomy into a big data science. Yet, little effort has been directed towards safeguarding and subsequently mobilizing the considerable amount of original data generated during the process of naming 15,000–20,000 species every year. From the perspective of alpha-taxonomists, we provide a review of the properties and diversity of taxonomic data, assess their volume and use, and establish criteria for optimizing data repositories. We su

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33

Gotelli, Nicholas J. "A taxonomic wish–list for community ecology." Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences 359, no. 1444 (2004): 585–97. http://dx.doi.org/10.1098/rstb.2003.1443.

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Community ecology seeks to explain the number and relative abundance of coexisting species. Four research frontiers in community ecology are closely tied to research in systematics and taxonomy: the statistics of species richness estimators, global patterns of biodiversity, the influence of global climate change on community structure, and phylogenetic influences on community structure. The most pressing needs for taxonomic information in community ecology research are usable taxonomic keys, current nomenclature, species occurrence records and resolved phylogenies. These products can best be o

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34

Gajdács, Márió. "Taxonomy and nomenclature of bacteria with clinical and scientific importance: current concepts for pharmacists and pharmaceutical scientists." Acta Pharmaceutica Hungarica 89, no. 4 (2020): 99–108. http://dx.doi.org/10.33892/aph.2019.89.99-108.

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Taxonomy is the science of the classification of various living organisms consisting of three independent, but interrelated disciplines, namely classification, nomenclature and identification. With the advent of molecular biological methods and sequencing, a revolution is currently occurring with regards to the reporting of novel taxa and changes in the taxonomy of already described bacterial species. The applications of taxonomic changes can be broad ranging: they may impact the clinical care of patients, through variations in choosing the appropriate antimicrobial susceptibility testing stan

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35

Klazenga, Niels. "Generic concepts in Australian mosses." Australian Systematic Botany 18, no. 1 (2005): 17. http://dx.doi.org/10.1071/sb04014.

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The impact of changes in generic concepts as a result of changes in philosophy and methodology associated with phylogenetic systematics on the taxonomy of Australian mosses is discussed. It is concluded that, while phylogenetic systematics has already had a significant impact on the taxonomy of Australian mosses, many taxonomic changes that have occurred in recent years are the result of an enormous taxonomic backlog that is being gradually eliminated. The relative impact of phylogenetic systematics is expected to increase in coming years.

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Akram, Seemab, Shamsul Khamis, Shahrizim Zulkifly, Rishzuan Talib, and Nurul Izza Ab Ghani. "Phylogeny Study of 20 Selected Species of Zingiberaceae from Ex situ Collections in Peninsular Malaysia." Pertanika Journal of Tropical Agricultural Science 46, no. 1 (2023): 329–45. http://dx.doi.org/10.47836/pjtas.46.1.18.

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Zingiberaceae is widely distributed in Malaysia, with 750 species and 31 genera. This family comprises a different number of subfamilies and genera according to different taxonomic classification methods — classical taxonomy: one subfamily and four tribes vs molecular taxonomy: four subfamilies and six tribes. However, the taxonomic classification of Zingiberaceae is still debated, especially the classical taxonomy. It is due to some Zingiberaceae species showing cryptic morphologies that make it difficult to classify them through classical taxonomy, which refers to the unique morphological ch

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Czechowski, Paul, Laurence Clarke, Alan Cooper, and Mark Stevens. "Ground-truthing Phylotype Assignments for Antarctic Invertebrates." DNA Barcodes 5, no. 1 (2017): 1–13. http://dx.doi.org/10.1515/dna-2017-0001.

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AbstractBiodiversity information from Antarctic terrestrial habitats helps conservation efforts, but the distribution and diversity particularly of microinvertebrates remains poorly understood. Springtails, mites, tardigrades, nematodes and rotifers are difficult to identify using morphological features, hence DNA-based metabarcoding methods are well suited for their study. We compared taxonomy assignments of a high throughput sequencing metabarcoding approach using one ribosomal DNA (18S rDNA) and one mitochondrial DNA (cytochrome c oxidase subunit I - COI) marker with morphological reference

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38

Bénichou, Laurence, Isabelle Gérard, Éric Laureys, and Michelle J. Price. "Consortium of European TaXonomic Facilities (CETAF) best practices in electronic publishing in taXonomy." European Journal of Taxonomy 475 (November 13, 2018): 1–37. https://doi.org/10.5281/zenodo.3095109.

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Bénichou, Laurence, Gérard, Isabelle, Laureys, Éric, Price, Michelle J. (2018): Consortium of European TaXonomic Facilities (CETAF) best practices in electronic publishing in taXonomy. European Journal of Taxonomy 475: 1-37, DOI: 10.5281/zenodo.3095109

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39

Paredes, Ricardo. "More Than Names: The role of updated taxonomy in palaeontology collections." Biodiversity Information Science and Standards 3 (June 18, 2019): e36643. https://doi.org/10.3897/biss.3.36643.

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The accuracy on taxonomic determinations of palaeontology collections may have significant consequences in estimations of organism diversity through time. This justifies the need of taxonomic standardization of palaeontological collections. The perception of palaeodiversity through Phanerozoic time has significantly improved since the Sepkoski showed the marine invertebrate taxonomic data in diversity graphs, organized in orders (Sepkoski 1978) and families (Sepkoski 1979, Sepkoski 1984). The visual impact of these graphs engaged palaeontologists into gathering quantitative macroevolution in o

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Cooper, Endymion, Greg Whitbread, and Anne Fuchs. "Building the Australian National Species List." Biodiversity Information Science and Standards 7 (September 1, 2023): e111986. https://doi.org/10.3897/biss.7.111986.

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The Australian National Species List (AuNSL) is a unified, nationally accepted, taxonomy for the native and naturalised biota of Australia. It is derived from a set of taxon-focussed resources including the Australian Plant Name Index and Australian Plant Census, the Australian Faunal Directory, and similar lists of fungi, lichens and bryophytes. These resources share a common infrastructure, contribute to the single national taxonomy (AuNSL), but retain their independent curation practices and online presentation. The AuNSL is now the core national infrastructure providing names and taxonomy

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Dahruddin, Hadi, Renny Kurnia Hadiaty, and Nicolas Hubert. "DNA BARCODING: FOUNDATIONS AND APPLICATIONS FOR SOUTHEAST ASIAN FRESHWATER FISHES." Treubia 43 (March 7, 2025): 1–16. https://doi.org/10.14203/treubia.v43i0.2968.

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Identifying and delineating species are the primary tasks of taxonomy. Owing to the decreasing interest of the nations for taxonomy and the inventory of living beings, funds have been drastically decreasing during the last two decades for taxonomic studies. As a consequence, the worldwide pool of taxonomists has dramatically decreased. DNA barcoding, as an automated tool for species delineation and identification, proved to rejuvenate the field of taxonomy and open new perspectives in ecology and conservation. In the present review, we will discuss how DNA barcoding established as a new paradi

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Brooks, Jeremy M., Joshua B. Grinath, A. M. Rasmussen, and Anna S. Grinath. "I Know That’s a Grasshopper, but I Don’t Know Why." American Biology Teacher 85, no. 3 (2023): 159–63. http://dx.doi.org/10.1525/abt.2023.85.3.159.

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Undergraduate biology teachers usually emphasize taxonomic keys as tools for students to explore organismal diversity and biological roles, largely ignoring the epistemologically challenging process of creating the keys. Students are often frustrated by the challenging language and apparent randomness of traits selected for taxonomic keys, which in turn leads to decreased interest in and motivation for taxonomy. Here, we offer an Argument-Driven Inquiry activity designed to engage students in both the scientific practices and processes required to generate taxonomic keys. Students make observa

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Patil, Sachin, and Kishore S. Rajput. "The genus Isoetes from India: An overview." Plant Science Today 4, no. 4 (2017): 213–26. http://dx.doi.org/10.14719/pst.2017.4.4.339.

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The information regarding the Indian quillwort is reviewed herewith to highlight the taxonomy, history, distribution, phytogeography, morphology, phenology, chromosome count, numerical taxonomy and present taxonomic scenario of Indian species. Authors also reviewed the opinions of different researchers on doubtful species of Indian Isoetes.

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Catlett, Dylan, Kevin Son, and Connie Liang. "ensembleTax: an R package for determinations of ensemble taxonomic assignments of phylogenetically-informative marker gene sequences." PeerJ 9 (July 26, 2021): e11865. http://dx.doi.org/10.7717/peerj.11865.

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Background High-throughput sequencing of phylogenetically informative marker genes is a widely used method to assess the diversity and composition of microbial communities. Taxonomic assignment of sampled marker gene sequences (referred to as amplicon sequence variants, or ASVs) imparts ecological significance to these genetic data. To assign taxonomy to an ASV, a taxonomic assignment algorithm compares the ASV to a collection of reference sequences (a reference database) with known taxonomic affiliations. However, many taxonomic assignment algorithms and reference databases are available, and

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Durkin, Louisa, Tobias Jansson, Marisol Sanchez, et al. "When mycologists describe new species, not all relevant information is provided (clearly enough)." MycoKeys 72 (September 10, 2020): 109–28. http://dx.doi.org/10.3897/mycokeys.72.56691.

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Taxonomic mycology struggles with what seems to be a perpetual shortage of resources. Logically, fungal taxonomists should therefore leverage every opportunity to highlight and visualize the importance of taxonomic work, the usefulness of taxonomic data far beyond taxonomy, and the integrative and collaborative nature of modern taxonomy at large. Is mycology really doing that, though? In this study, we went through ten years’ worth (2009–2018) of species descriptions of extant fungal taxa – 1,097 studies describing at most ten new species – in five major mycological journals plus one plant jou

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Durkin, Louisa, Tobias Jansson, Marisol Sanchez, et al. "When mycologists describe new species, not all relevant information is provided (clearly enough)." MycoKeys 72 (September 10, 2020): 109–28. https://doi.org/10.3897/mycokeys.72.56691.

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Taxonomic mycology struggles with what seems to be a perpetual shortage of resources. Logically, fungal taxonomists should therefore leverage every opportunity to highlight and visualize the importance of taxonomic work, the usefulness of taxonomic data far beyond taxonomy, and the integrative and collaborative nature of modern taxonomy at large. Is mycology really doing that, though? In this study, we went through ten years' worth (2009–2018) of species descriptions of extant fungal taxa – 1,097 studies describing at most ten new species – in five major mycological journals plus one plant jou

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Blaxter, Mark, Joana Pauperio, Conrad Schoch, and Kerstin Howe. "Taxonomy Identifiers (TaxId) for Biodiversity Genomics: a guide to getting TaxId for submission of data to public databases." Wellcome Open Research 9 (October 15, 2024): 591. http://dx.doi.org/10.12688/wellcomeopenres.22949.1.

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Biodiversity genomics critically depends on correct taxonomic identification of the sample from which data are derived. Tracking of that taxonomic information through systems that archive data and report on genome sequencing efforts. For submission of data to the International Nucleotide Sequence Database Collaboration (INSDC) databases (DNA DataBank of Japan [DDBJ], European Nucleotide Archive [ENA] and National Center for Biotechnology Information [NCBI]), samples and data derived from them must be assigned a species-level NCBI Taxonomy taxonomic identifier (TaxId, sometimes referred to as t

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Samper, Cristián. "Taxonomy and environmental policy." Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences 359, no. 1444 (2004): 721–28. http://dx.doi.org/10.1098/rstb.2004.1476.

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In 1992, with the United Nations Conference on Environment and Development in Rio de Janeiro and the subsequent Convention on Biological Diversity (CBD), the world changed for the science of taxonomy. Many taxonomists appear not to have noticed this change, but it has significantly altered the political climate in which taxonomic research is undertaken. By the late 1990s it was clear that effective implementation of the CBD needed the participation of and funding for the taxonomic community. In this paper, I chart the rise of the Global Taxonomy Initiative (GTI), review some of its goals and e

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GARG, AKHIL, DETLEF LEIPE, and PETER UETZ. "The disconnect between DNA and species names: lessons from reptile species in the NCBI taxonomy database." Zootaxa 4706, no. 3 (2019): 401–7. http://dx.doi.org/10.11646/zootaxa.4706.3.1.

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We compared the species names in the Reptile Database, a dedicated taxonomy database, with those in the NCBI taxonomy database, which provides the taxonomic backbone for the GenBank sequence database. About 67% of the known ~11,000 reptile species are represented with at least one DNA sequence and a binary species name in GenBank. However, a common problem arises through the submission of preliminary species names (such as “Pelomedusa sp. A CK-2014”) to GenBank and thus the NCBI taxonomy. These names cannot be assigned to any accepted species names and thus create a disconnect between DNA sequ

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Lilburn, Timothy G., and George M. Garrity. "Exploring prokaryotic taxonomy." International Journal of Systematic and Evolutionary Microbiology 54, no. 1 (2004): 7–13. http://dx.doi.org/10.1099/ijs.0.02749-0.

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Techniques drawn from exploratory data analysis, using tools found in the S-Plus statistical software package, have been used to inspect and maintain the Bergey's Taxonomic Outline and to move towards an automated and community-based means of working on the outline. These techniques can be used to classify sequences from unnamed and uncultured organisms, to visualize errors in the taxonomy or in the curation of the sequences, to suggest emendations to the taxonomy or to the classification of extant species and to complement the visualization of phylogenies based on treeing methods. A dataset o

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