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Journal articles on the topic 'Thermoplasma volcanium'

Author: Grafiati
Published: 4 June 2021
Last updated: 4 February 2022

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1

Segerer, Andreas, Thomas A. Langworthy, and Karl O. Stetter. "Thermoplasma acidophilum and Thermoplasma volcanium sp. nov. from Solfatara Fields." Systematic and Applied Microbiology 10, no. 2 (1988): 161–71. http://dx.doi.org/10.1016/s0723-2020(88)80031-6.

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2

Zabcı, Sema, and Semra Kocabiyik. "Gene expression profiling of Thermoplasma volcanium under extreme stress conditions." New Biotechnology 31 (July 2014): S204—S205. http://dx.doi.org/10.1016/j.nbt.2014.05.976.

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3

KOCABIYIK, S., and H. OZEL. "An extracellular—Pepstatin insensitive acid protease produced by Thermoplasma volcanium." Bioresource Technology 98, no. 1 (2007): 112–17. http://dx.doi.org/10.1016/j.biortech.2005.11.016.

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4

KAWASHIMA, Tsuyoshi, Yoshihiro YAMAMOTO, Hironori ARAMAKI, et al. "Determination of the complete genomic DNA sequence of Thermoplasma volcanium GSS1." Proceedings of the Japan Academy. Ser. B: Physical and Biological Sciences 75, no. 7 (1999): 213–18. http://dx.doi.org/10.2183/pjab.75.213.

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5

Kocabıyık, Semra, İnci Özdemir, Peter Zwickl, and Seda Özdoğan. "Molecular cloning and co-expression of Thermoplasma volcanium proteasome subunit genes." Protein Expression and Purification 73, no. 2 (2010): 223–30. http://dx.doi.org/10.1016/j.pep.2010.05.004.

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6

Kawashima, T., N. Amano, H. Koike, et al. "Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium." Proceedings of the National Academy of Sciences 97, no. 26 (2000): 14257–62. http://dx.doi.org/10.1073/pnas.97.26.14257.

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7

MINEZAKI, Yoshiaki, Tsuyoshi KAWASHIMA, Naoki AMANO, et al. "Visual representation of the complete genomic DNA sequence of the thermophilic archaeon Thermoplasma volcanium." Proceedings of the Japan Academy, Series B 79B, no. 1 (2003): 15–21. http://dx.doi.org/10.2183/pjab.79b.15.

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8

Desjardins, Morgan, Wai Shun Mak, Terrence E. O’Brien, Dylan Alexander Carlin, Dean J. Tantillo, and Justin B. Siegel. "Systematic Functional Analysis of Active-Site Residues in l-Threonine Dehydrogenase from Thermoplasma volcanium." ACS Omega 2, no. 7 (2017): 3308–14. http://dx.doi.org/10.1021/acsomega.7b00519.

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9

Orfaniotou, Fotini, Pavlos Tzamalis, Angelos Thanassoulas, et al. "The stability of the archaeal HU histone-like DNA-binding protein from Thermoplasma volcanium." Extremophiles 13, no. 1 (2008): 1–10. http://dx.doi.org/10.1007/s00792-008-0190-6.

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10

Dahche, Hanan, AbdulShakur Abdullah, M. Ben Potters, and Peter J. Kennelly. "A PPM-family protein phosphatase from the thermoacidophile Thermoplasma volcanium hydrolyzes protein-bound phosphotyrosine." Extremophiles 13, no. 2 (2008): 371–77. http://dx.doi.org/10.1007/s00792-008-0211-5.

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11

KAWASHIMA, Tsuyoshi, Katsushi YOKOYAMA, Sadaharu HIGUCHI, and Masashi SUZUKI. "Identification of proteins present in the archaeon Thermoplasma volcanium cultured in aerobic or anaerobic conditions." Proceedings of the Japan Academy, Series B 81, no. 6 (2005): 204–19. http://dx.doi.org/10.2183/pjab.81.204.

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12

Blank, P. N., A. A. Barnett, T. A. Ronnebaum, et al. "Structural studies of geranylgeranylglyceryl phosphate synthase, a prenyltransferase found in thermophilic Euryarchaeota." Acta Crystallographica Section D Structural Biology 76, no. 6 (2020): 542–57. http://dx.doi.org/10.1107/s2059798320004878.

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Archaea are uniquely adapted to thrive in harsh environments, and one of these adaptations involves the archaeal membrane lipids, which are characterized by their isoprenoid alkyl chains connected via ether linkages to glycerol 1-phosphate. The membrane lipids of the thermophilic and acidophilic euryarchaeota Thermoplasma volcanium are exclusively glycerol dibiphytanyl glycerol tetraethers. The first committed step in the biosynthetic pathway of these archaeal lipids is the formation of the ether linkage between glycerol 1-phosphate and geranylgeranyl diphosphate, and is catalyzed by the enzym
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13

AMANO, Naoki, Kuniaki TSUJI, Sonomi EBIHARA, and Masashi SUZUKI. "Identification of promoter sequences using archaeal genomic sequences 2. Analysis of a meso-thermophile, Thermoplasma volcanium." Proceedings of the Japan Academy, Series B 79B, no. 6 (2003): 163–69. http://dx.doi.org/10.2183/pjab.79b.163.

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14

Cherney, Maia M., Leonid T. Cherney, Craig R. Garen, and Michael N. G. James. "The Structures of Thermoplasma volcanium Phosphoribosyl Pyrophosphate Synthetase Bound to Ribose-5-Phosphate and ATP Analogs." Journal of Molecular Biology 413, no. 4 (2011): 844–56. http://dx.doi.org/10.1016/j.jmb.2011.09.007.

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15

Ikeda, Yu, Hikari Minoshima, Mai Satoh, et al. "Transcriptional factor Fur from Thermoplasma volcanium binds its own promoter DNA in a divalent cation-dependent manner." Journal of General and Applied Microbiology 58, no. 6 (2012): 465–73. http://dx.doi.org/10.2323/jgam.58.465.

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16

Faguy, D. M., D. P. Bayley, A. S. Kostyukova, N. A. Thomas, and K. F. Jarrell. "Isolation and characterization of flagella and flagellin proteins from the Thermoacidophilic archaea Thermoplasma volcanium and Sulfolobus shibatae." Journal of bacteriology 178, no. 3 (1996): 902–5. http://dx.doi.org/10.1128/jb.178.3.902-905.1996.

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17

Wright, André-Denis G., Clare H. Auckland, and Denis H. Lynn. "Molecular Diversity of Methanogens in Feedlot Cattle from Ontario and Prince Edward Island, Canada." Applied and Environmental Microbiology 73, no. 13 (2007): 4206–10. http://dx.doi.org/10.1128/aem.00103-07.

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ABSTRACT The molecular diversity of rumen methanogens in feedlot cattle and the composition of the methanogen populations in these animals from two geographic locations were investigated using 16S rRNA gene libraries prepared from pooled PCR products from 10 animals in Ontario (127 clones) and 10 animals from Prince Edward Island (114 clones). A total of 241 clones were examined, with Methanobrevibacter ruminantium accounting for more than one-third (85 clones) of the clones identified. From these 241 clones, 23 different 16S rRNA phylotypes were identified. Feedlot cattle from Ontario, which
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18

Kim, Jung-Woo, Yung-Hee Kim, Hee-Seob Lee, et al. "Molecular cloning and biochemical characterization of the first archaeal maltogenic amylase from the hyperthermophilic archaeon Thermoplasma volcanium GSS1." Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1774, no. 5 (2007): 661–69. http://dx.doi.org/10.1016/j.bbapap.2007.03.010.

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19

Minoshima, Hikari, Yu Ikeda, Miki Fujii, et al. "Specificity of Fur Binding to the Oxidative Stress Response Gene Promoter in the Facultative Anaerobic Archaeon Thermoplasma volcanium." Biological and Pharmaceutical Bulletin 37, no. 3 (2014): 481–85. http://dx.doi.org/10.1248/bpb.b13-00613.

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20

Soderberg, Tim. "Biosynthesis of ribose-5-phosphate and erythrose-4-phosphate in archaea: a phylogenetic analysis of archaeal genomes." Archaea 1, no. 5 (2005): 347–52. http://dx.doi.org/10.1155/2005/314760.

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A phylogenetic analysis of the genes encoding enzymes in the pentose phosphate pathway (PPP), the ribulose monophosphate (RuMP) pathway, and the chorismate pathway of aromatic amino acid biosynthesis, employing data from 13 complete archaeal genomes, provides a potential explanation for the enigmatic phylogenetic patterns of the PPP genes in archaea. Genomic and biochemical evidence suggests that three archaeal species (Methanocaldococcus jannaschii,Thermoplasma acidophilumandThermoplasma volcanium) produce ribose-5-phosphate via the nonoxidative PPP (NOPPP), whereas nine species apparently la
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21

Kocabıyık, Semra, and Sema Aygar. "Improvement of protein stability and enzyme recovery under stress conditions by using a small HSP (tpv-HSP 14.3) from Thermoplasma volcanium." Process Biochemistry 47, no. 11 (2012): 1676–83. http://dx.doi.org/10.1016/j.procbio.2011.11.014.

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22

Ma, Chao, Chinar Pathak, Sunbok Jang, et al. "Structure of Thermoplasma volcanium Ard1 belongs to N-acetyltransferase family member suggesting multiple ligand binding modes with acetyl coenzyme A and coenzyme A." Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1844, no. 10 (2014): 1790–97. http://dx.doi.org/10.1016/j.bbapap.2014.07.011.

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23

Ma, Chao, Chinar Pathak, Sang Jae Lee та ін. "Alba from Thermoplasma volcanium belongs to α-NAT's: An insight into the structural aspects of Tv Alba and its acetylation by Tv Ard1". Archives of Biochemistry and Biophysics 590 (січень 2016): 90–100. http://dx.doi.org/10.1016/j.abb.2015.11.039.

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24

Ossandón, F. J., G. Rivera, F. Lazo, and David S. Holmes. "Predicting the Function of Hypothetical Genes in Genomes of Bioleaching Microorganisms." Advanced Materials Research 71-73 (May 2009): 203–6. http://dx.doi.org/10.4028/www.scientific.net/amr.71-73.203.

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A particularly challenging problem in genome annotation is to attribute function to genes annotated as “hypothetical, no known function”. These typically account for about 40% of all genes regardless of the genome. Some of these are “orphan” genes and are not found in any other genome. Some of these could encode species specific proteins and so are particularly interesting for evaluating novel metabolic potential and for understanding the evolution of genes and genomes. Several similarity and non-similarity bioinformatics tools exist that help predict function of hypotheticals, but none are ab
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