Relevant bibliographies by topics / Translation initiation sites

Contents

  1. Journal articles
  2. Dissertations / Theses
  3. Book chapters
  4. Conference papers

Academic literature on the topic 'Translation initiation sites'

Author: Grafiati
Published: 4 June 2021
Last updated: 18 February 2022

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Journal articles on the topic "Translation initiation sites"

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Paek, Ki Young, Ka Young Hong, Incheol Ryu, et al. "Translation initiation mediated by RNA looping." Proceedings of the National Academy of Sciences 112, no. 4 (2015): 1041–46. http://dx.doi.org/10.1073/pnas.1416883112.

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Eukaryotic translation initiation commences at the initiation codon near the 5′ end of mRNA by a 40S ribosomal subunit, and the recruitment of a 40S ribosome to an mRNA is facilitated by translation initiation factors interacting with the m7G cap and/or poly(A) tail. The 40S ribosome recruited to an mRNA is then transferred to the AUG initiation codon with the help of translation initiation factors. To understand the mechanism by which the ribosome finds an initiation codon, we investigated the role of eIF4G in finding the translational initiation codon. An artificial polypeptide eIF4G fused w
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Gelsinger, Diego Rivera, Emma Dallon, Rahul Reddy, Fuad Mohammad, Allen R. Buskirk, and Jocelyne DiRuggiero. "Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution." Nucleic Acids Research 48, no. 10 (2020): 5201–16. http://dx.doi.org/10.1093/nar/gkaa304.

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Abstract High-throughput methods, such as ribosome profiling, have revealed the complexity of translation regulation in Bacteria and Eukarya with large-scale effects on cellular functions. In contrast, the translational landscape in Archaea remains mostly unexplored. Here, we developed ribosome profiling in a model archaeon, Haloferax volcanii, elucidating, for the first time, the translational landscape of a representative of the third domain of life. We determined the ribosome footprint of H. volcanii to be comparable in size to that of the Eukarya. We linked footprint lengths to initiating
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Ganoza, M. C., E. C. Kofoid, P. Marlière, and B. G. Louis. "Potential secondary structure at translation-initiation sites." Nucleic Acids Research 16, no. 9 (1988): 4196. http://dx.doi.org/10.1093/nar/16.9.4196-a.

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Ganoza, M. C., E. C. Kofoid, P. Marlière, and B. G. Louis. "Potential secondary structure at translation-initiation sites." Nucleic Acids Research 15, no. 1 (1987): 345–60. http://dx.doi.org/10.1093/nar/15.1.345.

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Robbins-Pianka, A., M. D. Rice, and M. P. Weir. "The mRNA landscape at yeast translation initiation sites." Bioinformatics 26, no. 21 (2010): 2651–55. http://dx.doi.org/10.1093/bioinformatics/btq509.

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Zhang, Sai, Hailin Hu, Tao Jiang, Lei Zhang, and Jianyang Zeng. "TITER: predicting translation initiation sites by deep learning." Bioinformatics 33, no. 14 (2017): i234—i242. http://dx.doi.org/10.1093/bioinformatics/btx247.

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Choi, Myoung-Kwon, Sung-Dong Park, In-Sick Park, and Il-Soo Moon. "Localization of Translation Initiation Factors to the Postsynaptic Sites." Journal of Life Science 21, no. 11 (2011): 1526–31. http://dx.doi.org/10.5352/jls.2011.21.11.1526.

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Li, Guo-Liang, and Tze-Yun Leong. "Feature Selection for the Prediction of Translation Initiation Sites." Genomics, Proteomics & Bioinformatics 3, no. 2 (2005): 73–83. http://dx.doi.org/10.1016/s1672-0229(05)03012-3.

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Sendoel, Ataman, Joshua G. Dunn, Edwin H. Rodriguez, et al. "Translation from unconventional 5′ start sites drives tumour initiation." Nature 541, no. 7638 (2017): 494–99. http://dx.doi.org/10.1038/nature21036.

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Shah, O. Jameel, Joshua C. Anthony, Scot R. Kimball, and Leonard S. Jefferson. "4E-BP1 and S6K1: translational integration sites for nutritional and hormonal information in muscle." American Journal of Physiology-Endocrinology and Metabolism 279, no. 4 (2000): E715—E729. http://dx.doi.org/10.1152/ajpendo.2000.279.4.e715.

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Maintenance of cellular protein stores in skeletal muscle depends on a tightly regulated synthesis-degradation equilibrium that is conditionally modulated under an extensive range of physiological and pathophysiological circumstances. Recent studies have established the initiation phase of mRNA translation as a pivotal site of regulation for global rates of protein synthesis, as well as a site through which the synthesis of specific proteins is controlled. The protein synthetic pathway is exquisitely sensitive to the availability of hormones and nutrients and employs a comprehensive integrativ
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Dissertations / Theses on the topic "Translation initiation sites"

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Booden, Helen C. "Translation initiation factor requirements of the cyclinT1 and set7 apoptotic internal ribosome entry sites." Thesis, University of Nottingham, 2010. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.523033.

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Steimer, Sarah Reath. "Investigation of novel ribosomal recognition sites in Escherichia coli noncanonical mRNAs containing multiple start codons." Miami University / OhioLINK, 2016. http://rave.ohiolink.edu/etdc/view?acc_num=miami1461847705.

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Berg, Emily Katherine. "Thermodynamics of λ-PCR Primer Design and Effective Ribosome Binding Sites". Thesis, Virginia Tech, 2019. http://hdl.handle.net/10919/89900.

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Recombinant DNA technology has been commonly used in a number of fields to synthesize new products or generate products with a new pathway. Conventional cloning methods are expensive and require significant time and labor; λ-PCR, a new cloning method developed in the Senger lab, has a number of advantages compared to other cloning processes due to its employment of relatively inexpensive and widely available materials and time-efficiency. While the amount of lab work required for the cloning process is minimal, the importance of accurate primer design cannot be overstated. The target of this s
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Qin, Daoming. "Role of 16S Ribosomal RNA in Translation Initiation." The Ohio State University, 2011. http://rave.ohiolink.edu/etdc/view?acc_num=osu1299007063.

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Croitoru, Victor. "Study on the Function of Translation Initiation Factor IF1." Doctoral thesis, Stockholm : Department of Genetics, Microbiology and Toxicology, Stockholm University, 2006. http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-1032.

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Sadahiro, Akitoshi. "Translation of Hepatitis A Virus IRES Is Upregulated by a Hepatic Cell-Specific Factor." Kyoto University, 2019. http://hdl.handle.net/2433/242387.

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Takyar, Seyedtaghi. "Translation initiation in HCV : the effect of cyanocobalamin on the structure and function of the HCV internal ribosomal entry site /." St. Lucia, Qld, 2001. http://www.library.uq.edu.au/pdfserve.php?image=thesisabs/absthe17570.pdf.

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Mengardi, Chloé. "Étude de l'effet des microARN sur l'initiation de la traduction dirigée par l'IRES du Virus de l'Hépatite C." Thesis, Lyon, 2016. http://www.theses.fr/2016LYSEN001.

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Les microARN (miARN) sont de petits ARN non-codants qui contrôlent l’expression génique, en s’hybridant, le plus souvent, de manière imparfaite à des séquences spécifiques qui se trouvent généralement dans la région non traduite en 3' (3’UTR) de transcrits cibles. Les miARN guident sur l’ARN messager (ARNm) un complexe protéique appelé RNA-induced Silencing Complex (RISC), composé des protéines Argonaute et TNRC6, qui perturbe l’initiation de la traduction et provoque la déadénylation et la dégradation du transcrit. C'est l’interaction entre le RISC et le complexe de pré-initiation de la tradu
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Zhang, Yuanyuan. "TRANSLATIONAL REGULATORY MECHANISMS OF THE RAT AND HUMAN MULTIDRUG RESISTANCE PROTEIN 2." UKnowledge, 2008. http://uknowledge.uky.edu/gradschool_diss/649.

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Multidrug resistance protein 2 (MRP2) is the second member the C subfamily in the superfamily of adenosine triphosphate (ATP)-binding cassette (ABC) efflux transporters. MRP2 is a critical player for generation of bile acidindependent bile flow and biliary excretion of glutathione, glucuronate and sulfate conjugates of endo- and xenobiotics. Dysfunctional expression of MRP2 is associated with Dubin-Johnson Syndrome. Pathological and physiological states or xenobiotics change the MRP2 expression level. Under some conditions, expression of the human MRP2 and rat Mrp2 proteins are regulated at th
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Murphy, Patrick. "Characterisation of critical interactions between translation factors eIF2 and eIF2B." Thesis, University of Manchester, 2013. https://www.research.manchester.ac.uk/portal/en/theses/characterisation-of-critical-interactions-between-translation-factors-eif2-and-eif2b(9138d7c8-34b1-4489-8048-a2ac45ef8533).html.

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Eukaryotic translation initiation is a complex and highly regulated process involving the ribosome, mRNA and proteins called eukaryotic initiation factors (eIFs). The overall aim of translation initiation is to position the ribosome at the initiation codon of the mRNA. eIF2, in its GTP-bound conformation, binds the initiator tRNA (Met-tRNAiMet) and delivers it to the 40S ribosomal subunit. When the anticodon of the tRNA is bound to the initiation codon, the GTP on eIF2 is hydrolysed to GDP. The guanine nucleotide exchange factor (GEF) eIF2B regenerates eIF2-GTP. eIF2 and eIF2B are multisubunit
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Book chapters on the topic "Translation initiation sites"

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Tzanis, George, and Ioannis Vlahavas. "Prediction of Translation Initiation Sites Using Classifier Selection." In Advances in Artificial Intelligence. Springer Berlin Heidelberg, 2006. http://dx.doi.org/10.1007/11752912_37.

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Li, Guoliang, Tze-Yun Leong, and Louxin Zhang. "Translation Initiation Sites Prediction with Mixture Gaussian Models." In Lecture Notes in Computer Science. Springer Berlin Heidelberg, 2004. http://dx.doi.org/10.1007/978-3-540-30219-3_29.

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Gao, Xiangwei, Ji Wan, and Shu-Bing Qian. "Genome-Wide Profiling of Alternative Translation Initiation Sites." In Methods in Molecular Biology. Springer New York, 2016. http://dx.doi.org/10.1007/978-1-4939-3067-8_19.

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Zeng, Jia, and Reda Alhajj. "Integrating Swarm Intelligent Algorithms for Translation Initiation Sites Prediction." In Innovations in Swarm Intelligence. Springer Berlin Heidelberg, 2009. http://dx.doi.org/10.1007/978-3-642-04225-6_8.

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Tzanis, George, Christos Berberidis, and Ioannis Vlahavas. "A Novel Data Mining Approach for the Accurate Prediction of Translation Initiation Sites." In Biological and Medical Data Analysis. Springer Berlin Heidelberg, 2006. http://dx.doi.org/10.1007/11946465_9.

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Vishnevsky, O. V., I. V. Avdeeva, and A. V. Kochetov. "Study of the Specific Contextual Features of Translation Initiation and Termination Sites in Saccharomyces Cerevisiae." In Bioinformatics of Genome Regulation and Structure. Springer US, 2004. http://dx.doi.org/10.1007/978-1-4419-7152-4_23.

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Tzanis, George, Christos Berberidis, Anastasia Alexandridou, and Ioannis Vlahavas. "Improving the Accuracy of Classifiers for the Prediction of Translation Initiation Sites in Genomic Sequences." In Advances in Informatics. Springer Berlin Heidelberg, 2005. http://dx.doi.org/10.1007/11573036_40.

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de Haro-García, Aida, Javier Pérez-Rodríguez, and Nicolás García-Pedrajas. "Feature Selection for Translation Initiation Site Recognition." In Lecture Notes in Computer Science. Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-21827-9_37.

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García-Pedrajas, Nicolás, Domingo Ortiz-Boyer, María D. García-Pedrajas, and Colin Fyfe. "Class Imbalance Methods for Translation Initiation Site Recognition." In Trends in Applied Intelligent Systems. Springer Berlin Heidelberg, 2010. http://dx.doi.org/10.1007/978-3-642-13022-9_33.

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del Castillo-Gomariz, Rafael, and Nicolás García-Pedrajas. "Translation Initiation Site Recognition by Means of Evolutionary Response Surfaces." In Lecture Notes in Computer Science. Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-21827-9_39.

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Conference papers on the topic "Translation initiation sites"

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Karri, Kritika, and Dhundy R. Bastola. "A novel signature for identification of upstream alternative translation initiation sites." In 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2015. http://dx.doi.org/10.1109/bibm.2015.7359850.

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Sendoel, Ataman, Joshua G. Dunn, Edwin H. Rodriguez, et al. "Abstract 4766: Translation from unconventional 5' start sites drives tumor initiation." In Proceedings: AACR Annual Meeting 2017; April 1-5, 2017; Washington, DC. American Association for Cancer Research, 2017. http://dx.doi.org/10.1158/1538-7445.am2017-4766.

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Zeng, Jia, and Reda Alhajj. "Predicting translation initiation sites using a multi-agent architecture empowered with reinforcement learning." In 2008 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB 2008). IEEE, 2008. http://dx.doi.org/10.1109/cibcb.2008.4675786.

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Gao, Shi-Bo, and Yun-Tao Zhang. "Optimization of AdaBoost Algorithm by PSO and Its Application in Translation Initiation Sites Prediction." In 2009 WRI Global Congress on Intelligent Systems. IEEE, 2009. http://dx.doi.org/10.1109/gcis.2009.169.

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Huang, Juncai, Fengbi Wang, Yangji Ou, and Mingtian Zhou. "A Semi-supervised SVM Based Incorporation Prior Biological Knowledge for Recognizing Translation Initiation Sites." In 2009 WRI World Congress on Computer Science and Information Engineering. IEEE, 2009. http://dx.doi.org/10.1109/csie.2009.447.

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Li, Haifeng, and Tao Jiang. "A class of edit kernels for SVMs to predict translation initiation sites in eukaryotic mRNAs." In the eighth annual international conference. ACM Press, 2004. http://dx.doi.org/10.1145/974614.974649.

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Ma, Chuang, Dao Zhou, and Yanhong Zhou. "Feature Mining and Integration for Improving the Prediction Accuracy of Translation Initiation Sites in Eukaryotic mRNAs." In 2006 Fifth International Conference on Grid and Cooperative Computing Workshops. IEEE, 2006. http://dx.doi.org/10.1109/gccw.2006.40.

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Wha Lin, Shu, J. Ware, H. Roberts, N. McGraw, W. McAllister, and D. Stafford. "EXPRESSION OF HUMAN FACTOR IX IN MAMMALIAN CELLS." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1643567.

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Human factor IX has been expressed in mammalian cells. A cloned factor IX cDNA missing the first 15 nucleotides of the 5’ end was modified by in vitro mutagenesis to restore the missing codons and add the translation consensus sequence, CCACC, proposed by Kozak to be optimal for translational initiation. Additionally, Bgl II and BamHI sites were added immediately upstream of the CCACC sequence for ease of portability of the fragment. This modified cDNA was inserted into a bovine papillomavirus (BPV) vector under the control of a mouse met alio thionein promoter. The constructed plasmid pBPV-IX
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Zeng, Jia, and Reda Alhajj. "Multi-agent System for Translation Initiation Site Prediction." In 2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007). IEEE, 2007. http://dx.doi.org/10.1109/bibm.2007.20.

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Zuallaert, Jasper, Mijung Kim, Yvan Saeys, and Wesley De Neve. "Interpretable convolutional neural networks for effective translation initiation site prediction." In 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2017. http://dx.doi.org/10.1109/bibm.2017.8217833.

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