Academic literature on the topic 'Tyrosine fluorescence'

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Journal articles on the topic "Tyrosine fluorescence"

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Turner, R. J., R. S. Roche, R. S. Mani, and C. M. Kay. "Tyrosine and tyrosinate fluorescence of S-100b. A time-resolved nanosecond fluorescence study. The effect of pH, Ca(II), and Zn(II)." Biochemistry and Cell Biology 67, no. 4-5 (April 1, 1989): 179–86. http://dx.doi.org/10.1139/o89-028.

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The properties of the tyrosine and tyrosinate emissions from brain S-100b have been studied by nanosecond time-resolved fluorescence at emission wavelengths in the range 305 to 365 nm. The effect of pH on the fluorescence has been studied at pH 6.5, 7.5, and 8.5 for the Ca(II) apo and holo forms of the protein, and for the apo and holo forms in the presence and absence of Zn(II) at pH 7.5. The fluorescence decay is biexponential at pH 8.5 and triexponential at pH 6.5 and 7.5. The three components of the decay have wavelength and metal ion dependent lifetimes in the ranges 0.06 to 1.05 ns, 0.49 to 3.76 ns, and 3.60 to 14.5 ns. The observation of a long lifetime component at wavelengths characteristic of emission from tyrosinate suggests that in class A proteins this may be a useful diagnostic of the environment of tyrosine in their native structures. The time-resolved emission spectra provide evidence for efficient, subnanosecond protolysis of the excited state of the single tyrosine (Tyr17) under all conditions studied except in 6 M guanidium chloride in which the protein shows only emission from tyrosine (λem 305 nm), suggesting that the tyrosinate emission is a property of the tertiary structure of the native protein. The Zn(II)-dependence of the fluorescence is fully consistent with the earlier suggestion that Tyr17 is near the Zn(II) binding site and remote from the high affinity Ca(II) binding site.Key words: S-100b, time-resolved fluorescence, tyrosinate fluorescence, time-resolved emission spectra.
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O'Neil, J. D. J., and T. Hofmann. "Tyrosine and tyrosinate fluorescence of pig intestinal Ca2+-binding protein." Biochemical Journal 243, no. 2 (April 15, 1987): 611–15. http://dx.doi.org/10.1042/bj2430611.

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The single tyrosine residue in both pig and cow intestinal Ca2+-binding proteins fluoresces at 303 nm although the crystal structure of the cow protein shows a hydrogen bond between the hydroxy group of the tyrosine and glutamate-38 [Szebenyi & Moffat (1986) J. Biol. Chem. 261, 8761-8777]. The latter interaction suggests that tyrosinate fluorescence should dominate the emission spectra of these proteins. A fluorescence difference spectrum, produced by subtracting the spectrum of free tyrosine from the spectrum of the protein, gives a peak at 334 nm due to ionized tyrosine. That this component of the emission spectrum is not due to a tryptophan-containing contaminant is shown by its elimination when the protein is denatured by guanidine and when glutamate-38 is protonated. We conclude that, in solution, the tyrosine residue in this protein interacts occasionally with glutamate-38 but that a permanent hydrogen bond is not formed.
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Shen, Yiming, Deyi Zhu, Wenhui Lu, Bing Liu, Yanchun Li, and Shan Cao. "The Characteristics of Intrinsic Fluorescence of Type I Collagen Influenced by Collagenase I." Applied Sciences 8, no. 10 (October 16, 2018): 1947. http://dx.doi.org/10.3390/app8101947.

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The triple helix structure of collagen can be degraded by collagenase. In this study, we explored how the intrinsic fluorescence of type I collagen was influenced by collagenase I. We found that tyrosine was the main factor that could successfully excite the collagen fluorescence. Initially, self-assembly behavior of collagen resulted in a large amount of tyrosine wrapped with collagen, which decreased the fluorescence intensity of type I collagen. After collagenase cleavage, some wrapped-tyrosine could be exposed and thereby the intrinsic fluorescence intensity of collagen increased. By observation and analysis, the influence of collagenase to intrinsic fluorescence of collagen was investigated and elaborated. Furthermore, collagenase cleavage to the special triple helix structure of collagen would result in a slight improvement of collagen thermostability, which was explained by the increasing amount of terminal peptides. These results are helpful and effective for reaction mechanism research related to collagen, which can be observed by fluorescent technology. Meantime, the reaction behaviors of both collagenase and collagenolytic proteases can also be analyzed by fluorescent technology. In conclusion, this research provides a foundation for the further investigation of collagen reactions in different areas, such as medicine, nutrition, food and agriculture.
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Gahn, L. G., and R. Roskoski. "Tyrosine hydroxylase activity and extrinsic fluorescence changes produced by polyanions." Biochemical Journal 295, no. 1 (October 1, 1993): 189–94. http://dx.doi.org/10.1042/bj2950189.

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The activity of tyrosine hydroxylase in vitro is affected by many factors, including pH, phosphorylation by several protein kinases, and polyanions. We investigated the activation of tyrosine hydroxylase by RNA or DNA (polyanions), using purified rat PC12 cell enzyme. RNA and DNA each increased tyrosine hydroxylase activity in the presence of subsaturating (125 microM) tetrahydrobiopterin at pH 6. RNA increased enzyme activity up to 6-fold with an EC50 of 3 micrograms/ml. RNA and DNA each increased tyrosine hydroxylase activity by decreasing the Km of the enzyme for tetrahydrobiopterin from 3 mM to 295 microM in the presence of 100 micrograms/ml RNA or 171 microM in the presence of 100 micrograms/ml DNA. We used the apolar fluorescent probe 8-anilino-1-naphthalenesulphonic acid (1,8-ANS) as a reporter group to provide the first evidence for changes in conformation related to changes in activity. At pH 6.0, 1,8-ANS bound to tyrosine hydroxylase and exhibited a characteristic fluorescence spectrum. At pH 7.2, both enzyme activity and fluorescence decreased. DNA or heparin (another polyanion) activated tyrosine hydroxylase and decreased fluorescence of the reporter group 30% at pH 6.0. This decrease suggests that these polyanions altered the conformation of tyrosine hydroxylase. The activating effects of polyanions were diminished at physiological pH (6.8-7.2) or in the presence of bivalent-cation salts (10 mM) or univalentcation salts (100 mM). These results suggest that polyanions play a minimal role, if any, in the physiological regulation of tyrosine hydroxylase activity.
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Willis, K. J., and A. G. Szabo. "Fluorescence decay kinetics of tyrosinate and tyrosine hydrogen-bonded complexes." Journal of Physical Chemistry 95, no. 4 (February 1991): 1585–89. http://dx.doi.org/10.1021/j100157a015.

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Jiang, Chao, Ya Li, Chenghui Liu, Liying Qiu, and Zhengping Li. "A general and versatile fluorescence turn-on assay for detecting the activity of protein tyrosine kinases based on phosphorylation-inhibited tyrosyl oxidation." Chemical Communications 52, no. 85 (2016): 12570–73. http://dx.doi.org/10.1039/c6cc07035c.

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WANG, Jing-Dong, Shuang LI, Rong LÜ, and An-Chi YU. "Fluorescence Quenching of Eosin Y by Tyrosine." Acta Physico-Chimica Sinica 31, no. 9 (2015): 1787–94. http://dx.doi.org/10.3866/pku.whxb201507241.

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Seethala, Ramakrishna. "Fluorescence Polarization Competition Immunoassay for Tyrosine Kinases." Methods 22, no. 1 (September 2000): 61–70. http://dx.doi.org/10.1006/meth.2000.1037.

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Gavrilov, V. B., A. V. Lychkovskii, E. P. Shostak, and S. V. Konev. "Fluorescence assay of tyrosine in blood plasma." Journal of Applied Spectroscopy 65, no. 3 (May 1998): 379–84. http://dx.doi.org/10.1007/bf02675456.

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Tominaga, Tania Toyomi, Hidetake Imasato, Otaciro Rangel Nascimento, and Marcel Tabak. "Interaction of tyrosine and tyrosine dipeptides with Cu2+ ions: A fluorescence study." Analytica Chimica Acta 315, no. 1-2 (October 1995): 217–24. http://dx.doi.org/10.1016/0003-2670(95)00303-h.

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Dissertations / Theses on the topic "Tyrosine fluorescence"

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Reynolds, Andrew Robert. "Functional fluorescence imaging of receptor tyrosine kinase activity in cells." Thesis, University College London (University of London), 2002. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.398898.

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Lee, Jinkeun. "Studies of the fluorescence of Tyrosine and Tryptophan using trilinear analysis /." The Ohio State University, 1994. http://rave.ohiolink.edu/etdc/view?acc_num=osu1487859879938668.

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KIM, SOYEON. "INVESTIGATING THE MOLECULAR INTERACTION OF ERBB RECEPTOR TYROSINE KINASES USING FLUORESCENCE CROSS CORRELATION SPECTROSCOPY." University of Akron / OhioLINK, 2021. http://rave.ohiolink.edu/etdc/view?acc_num=akron1632756640189756.

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Suen, Fung Ki. "Tyrosine hydroxylase-green fluorescence protein transgenic zebrafish as a biosensor and animal model for nicotine and ketamine drug effects." HKBU Institutional Repository, 2012. https://repository.hkbu.edu.hk/etd_ra/1449.

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Paul, Uchenna Prince. "Fluorescence Detectors for Proteins and Toxic Heavy Metals." Diss., CLICK HERE for online access, 2004. http://contentdm.lib.byu.edu/ETD/image/etd416.pdf.

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Vasconcelos, Stanley Nunes Siqueira. "Tirosina, substrato em reações de acoplamento cruzado: síntese de dipeptídeos Tyr-Tyr, heterociclos e investigação da atividade biollógica contra células cancerígenas e parasitárias." Universidade de São Paulo, 2017. http://www.teses.usp.br/teses/disponiveis/9/9138/tde-20122017-144457/.

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Tirosina, um aminoácido proteinogênico, de fundamental importância para nossa sobrevivência, foi objeto de estudo para a confecção da presente tese. Investigado frente às três reações de acoplamento cruzado mais exploradas nos últimos anos, Suzuki-Miyaura, Heck e Sonogashira, a 3-iodotirosina comportou-se como um excelente substrato na formação de unidades biarílicas, derivados estilbeno, formação de heterociclos do tipo 1,2,3-triazóis, quinolinas, benzofuranos e flavonas, bem como a formação de dipeptídeos Tyr-Tyr. A reação entre a 3-iodotirosina com diferentes nucleófilos de boro via reação de Suzuki- Miyaura, além de dar origem às unidades biarílicas, forneceu derivados do estilbeno, usados como substratos na construção de quinolinas, alcançadas por meio da reação multicomponente de Povarov, com catálise de prata em apenas 40 minutos sob irradiação de micro-ondas. Alguns desses derivados estilbeno, apresentaram ainda uma acentuada fluorescência, a qual foi medida em diferentes polaridades. Ao explorarmos a reação entre a 3-iodotirosina e acetilenos, derivados alquinílicos puderam ser convenientemente preparados, permitindo seu uso como materiais de partida na reação de cicloadição de Huisgen, no preparo de anéis triazólicos. Produtos provenientes da adição estereosseletiva de oxa-Michael, entre o anel fenólico da tirosina e aldeídos propargílicos, forneceram compostos carbonílicos α,β-insaturados capazes de reagirem via acoplamento intramolecular de Heck, levando a derivados 2-aril-3- formil-5-alanilbenzofuranos ou ainda, apenas alterando a atmosfera inerte de nitrogênio por monóxido de carbono, a formação de 2-aril-6-alanilflavonas via acilação intramolecular redutiva. Além da metodologia de síntese explorada na tese, alguns dos compostos obtidos apresentaram atividade biológica seletiva contra células de melanoma e leucemia, bem como atividade antiparasitária frente ao Plasmodium falciparum, não afetando a proliferação de células sadias. Dessa forma, os resultados apresentados, agregam ainda mais valor sintético e biológico ao aminoácido tirosina, explorados de forma inédita.
Tyrosine, a proteinogenic amino acid of fundamental importance for life, was the object of study for the research that is presented in this thesis. When 3-iodotyrosine was used in the three different types of cross-coupling reactions that have been exploited the most in recent years, namely the Suzuki-Miyaura, Heck and Sonogashira coupling reactions, 3-iodotyrosine as an excellent substrate for the formation of biaryl units, stilbene derivatives, 1,2,3-triazoletype heterocycles, quinolines, benzofurans and flavones, and Tyr-Tyr dipeptides. This work is organized into sections in order to facilitate ease of reading. The reaction between 3-iodotyrosine and different boron nucleophiles via the Suzuki- Miyaura coupling reaction, in addition to giving the biaryl units, also provided stilbene derivatives, which were used as substrates for the construction of quinolines via multicomponent Povarov reactions. The Povarov was performed with silver catalysis under 40 minutes of microwave irradiation. Some of these stilbene derivatives showed a marked fluorescence, which was measured in solvents with different polarities. By exploring the Sonogashira coupling reaction between 3-iodotyrosine and acetylenes, alkynyl derivatives could be conveniently prepared, which in turn could be used as starting materials in Huisgen cycloaddition reactions to synthesize1,2,3-triazole rings. Products from the stereoselective addition of oxa-Michael, between the phenolic ring of tyrosine and propargyl aldehydes, provided 945;,946;-unsaturated carbonyl compounds capable of reacting via Heck intramolecular coupling, leading to 2-aryl-3-formyl-5-alanylbenzofurans or by simply changing the inert atmosphere of nitrogen by carbon monoxide, the formation of 2- aryl-6-alanylflavones via reductive intramolecular acylation. In addition to the synthesis methodology explored in the thesis, some of the compounds showed selective biological activity against melanoma and leukemia cells, as well as antiparasitic activity against Plasmodium falciparum, without affecting the proliferation of healthy cells. In this way, the presented results add even more synthetic and biological value to the amino acid tyrosine, explored in an unprecedented way.
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Nag, Lipsa. "Internal dynamics of flavoproteins studied by femtosecond spectroscopy." Thesis, Université Paris-Saclay (ComUE), 2018. http://www.theses.fr/2018SACLX121/document.

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La nature utilise des réactions de transfert de charge (TdC) dans de nombreuses fonctions biologiquesfaisant intervenir des cofacteurs à activité redox, comme les flavines (FAD et FMN). Le TdC dans les protéines s’effectue souvent par la formation d'intermédiaires radicalaires. Les acides aminés tyrosine(TyrOH) et tryptophane sont impliqués comme intermédiaires majeurs. Les radicaux tryptophanyle ont été caractérisés auparavant dans leurs formes protoné et déprotoné. Cependant, les radicaux tyrosyles n'ont été caractérisés que dans la forme neutre et on pensait qu'ils étaient formés par extraction électronique et déprotonation. Les intermédiaires à courte durée de vie sont souvent difficiles à observer dans les réactions biochimiques, mais peuvent être peuplés s'ils sont formés photochimiquement par de courtes impulsions.Nous avons caractérisé des intermédiaires dans des réactions non-fonctionnelles de TdC dans des flavoprotéines en utilisant la spectroscopie femtoseconde de fluorescence et d'absorption. Des états excités et produits formés dans le type sauvage et des formes mutantes de la flavo-enzyme méthyltransférase TrmFO de Thermus thermophilus ont été étudiés. Dans le site actif de cette enzyme, une tyrosine (Tyr343) est empilée sur le cycle isoalloxazine de la FAD, et une cystéine (Cys51) peut former un adduit avec la FAD très fluorescente. Dans le mutant C51A, la fluorescence du FADox est fortement quenchée par transfert d'électrons de la Tyr343 dans ~1 ps. L'état produit résultant présente une caractéristique spectrale distincte avec une forte bande d'absorption à ~490 nm, encore jamais associée à aucune espèce radicalaire, qui a été attribuée pour la première fois au cation radical de la Tyr343 (TyrOH•+). L’état FAD•-TyrOH•+, est de très courte durée car il retombe par recombinaison de charge en ~3 ps.. Cette étude démontre que- malgré le très bas pKa de TyrOH•+ -le transfert d’électrons à partir de la tyrosine peut avoir lieu sans transfert concomitant de proton.De plus, des expériences de photosélection par polarisation ont permi d’estimer, l’orientation du moment dipolaire de la nouvelle transition entre FADox et TyrOH•+ dans le TrmFO C51A à 31°±5°. Ce résultat évalue l'orientation du moment dipolaire au sein du cycle phénolique. La découverte de directions distinctes pour la bande de transition de la flavine excitée et la transition à 490 nm confirme leur origine dans différentes entités moléculaires.Sur la base des résultats de TrmFO, nous avons réexaminé la photochimie de la flavoprotéine modèle glucose oxydase (GOX). Ddes résidus de tryptophane et de tyrosine sont situés proche du FAD et l'évolution du photoproduit à l'échelle picosecondes est plus complexe. Des phases de déclin de l'état excité avec des constantes de temps de 1 et ~4 ps ont été observées, ainsi que des phases pour l'évolution de l'état produit de ~4 ps, ~37 ps et une phase plus longue. Un modèle complet de la séparation et de recombinaison des charges dans GOX impliquant, des radicaux de tyrosine et de tryptophane, ainsi que des différents états redox du FAD a été décrit. Les résultats pour les phases de 4 ps et de 37 ps mettent en évidence l’implication du radical TyrOH•+, avec des caractéristiques semblables au C51A TrmFO. Ce résultat explique des caractéristiques énigmatiques connues et indique l'implication de TyrOH•+ dans divers systèmes protéiques.A ce jour, seul le radical tyrosyle déprotoné TyrO• a été identifié comme intermédiaire fonctionnel dans plusieurs systèmes. La visualisation d'un radical TyrOH•+ dans TrmFO C51A et GOX suggère sa formation intermédiaire en tant que précurseur de TyrO• dans des réactions biochimiques fonctionnelles.Enfin, dans TrmFO, la construction de variantes spécifiques par mutagénèse dirigée a été initiée pour étudier la flexibilité du site actif en utilisant la vitesse de TdC comme marqueur conformationnel. D'autres travaux sont nécessaires pour poursuivre cette voie
Nature employs charge transfer reactions in many biological functions. Redox-active cofactors like flavins (FAD and FMN) are often implicated in such reactions. Charge transfer in proteins often proceeds via formation of radical intermediates. The amino acid radicals of tyrosine (TyrOH) and tryptophan are thought to play important roles as intermediates in intra- and interprotein charge transfer reactions. Tryptophanyl radicals (both protonated cation and deprotonated neutral forms), had been characterized before. However, tyrosyl radicals had only been characterized in the neutral form, and were thought to be formed by concerted electron extraction and deprotonation of tyrosine. Short-lived intermediates are often difficult to observe in biochemical reactions, but may be populated when they can be photochemically formed using short light pulses.In this work, we have characterized intermediates in non-functional charge transfer reactions in flavoproteins using femtosecond time-resolved fluorescence and absorption spectroscopy. Excited states and product states formed in the wild type and mutant forms of the methyltransferase flavoenzyme TrmFO from Thermus thermophilus were investigated. In the TrmFO active site, a tyrosine (Tyr343), is closely stacked on the FAD isoalloxazine ring and a cysteine (Cys51) can form a highly fluorescent adduct with the FAD. In the mutant C51A, FADox fluorescence is strongly quenched by electron transfer from the Tyr343 in ~1ps. The resulting product state displayed a distinct spectral feature- a strong absorption band at ~490 nm unlike any previously characterized radical species. It was assigned to the radical cation of tyrosine (TyrOH•+) which had never been observed before. The FAD•-TyrOH•+ intermediate, is very short-lived as it decays in ~3ps, through charge recombination. As a general conclusion, despite the very low pKa of TyrOH•+, electron transfer from tyrosine can occur without concomitant proton transfer.Using polarization photoselection experiments, we estimated the dipole moment direction for this new transition. The resultant angle between the excited FADox transition and the probed TyrOH•+ transition in C51A TrmFO was 31º±5º. This result sets the orientation of the dipole moment of the transition in the molecular frame of the phenol ring. The finding of distinct directions for the excited FAD transition band and the 490 nm transition confirms their origin in different molecular entities.Following the results from TrmFO, we reinvestigated the photochemistry in the model flavoprotein glucose oxidase (GOX). Here, both tryptophan and tyrosine residues are located in the vicinity of FAD and the photoproduct evolution on the picosecond timescale is more complex. Distinct phases of excited state decay with time constants of 1ps and ~4ps were observed, as well as phases of ~4ps, ~37 ps and a longer-lives phase for product state evolution. Consequently, a comprehensive model for the involvement of radicals of tyrosine and tryptophan and, the different FAD redox states, in the light-induced charge separation and recombination in GOX was made. Partial involvement of the TyrOH•+ radical cation, spectrally similar to C51A TrmFO, was required for the 4 ps and 37 ps phases to account for the ensemble of data. This result explains previous enigmatic features and indicates the involvement of TyrOH•+ in a variety of protein systems.So far, only the deprotonated tyrosyl radical TyrO• had been observed as a functional intermediate in several systems. The visualization of protonated TyrOH•+ radical in TrmFO C51A and GOX suggests the possibility of its intermediate formation as a precursor of TyrO• in functional biochemical reactions.Finally, in TrmFO the construction of specific variants with site-directed mutagenesis was initiated to study active-site flexibility using electron transfer rates as conformational markers. Further experimental and modeling work is required to pursue this goal
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Peyressatre, Marion. "Développement de biosenseurs fluorescents et d’inhibiteurs pour suivre et cibler CDK5/p25 dans le glioblastome." Thesis, Montpellier, 2016. http://www.theses.fr/2016MONT3513/document.

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CDK5 est une protéine kinase exprimée de façon ubiquitaire et activée principalement dans le système nerveux central, ou elle joue un rôle important dans la transmission synaptique, la guidance axonale et la migration cellulaire, la plasticité synaptique et le développement neuronal. CDK5 est associée à la protéine p35 au niveau de la membrane cellulaire, et activée par clivage calpaine-dépendant de cette dernière en p25, ce qui conduit à la relocalisation de CDK5/p25 dans le cytoplasme cellulaire. CDK5/p25 phosphoryle de nombreux substrats dont la protéine Tau, contribuant ainsi à l’apparition de plaques neurofibrillaires responsable des pathologies neurodégénératives comme Alzheimer et Parkinson, lorsqu’elle est hyperactivée. Plus récemment, l’expression et l’hyperactivation de CDK5 a été décrite comme impliquée dans le développement de cancers et en particulier de tumeurs cérébrales. Toutefois aucune approche ne permet actuellement de détecter et de mesurer l’activité de CDK5/p25 directement dans des cellules vivantes, au sein des tissus et des tumeurs concernées, dû à un manque d’outils fiables et sensibles pour quantifier les changements dynamiques de son activité kinase. Par ailleurs, peu d’inhibiteurs sont actuellement disponibles pour inhiber CDK5/p25, de manière spécifique, la plupart ciblant la poche de fixation de l’ATP.Le premier objectif de ma thèse a consisté à développer un biosenseur d’activité fluorescent de nature peptidique appelé CDKACT5 qui rapporte l’activité kinase de CDK5/p25 recombinante et dans des extraits cellulaires de manière dynamique et réversible suivant stimulation ou inhibition de cette kinase. Une fois caractérisé et validé in vitro, le biosenseur a été appliqué à la détection d’altérations de CDK5/p25 dans différentes lignées cellulaires de glioblastome dans des essais fluorescents d’activité kinase. Enfin CDKACT5 a été introduit dans des cellules neuronales vivantes afin de suivre les changements dynamiques d’activité de CDK5/p25 par microscopie de fluorescence et vidéo microscopie.Le deuxième objectif de ma thèse a consisté à développer un biosenseur fluorescent conformationnel dans le but d’identifier des inhibiteurs non compétitifs de l’ATP ciblant la boucle d’activation de CDK5. Le biosenseur CDKCONF5 a été exploité pour réaliser un criblage haut débit de trois chimiothèques de petites molécules. Les touches identifiées ont été validées et caractérisées in vitro, pour déterminer leur potentiel inhibiteur dans des tests d’activité kinase et de prolifération cellulaire, ainsi que leur mécanisme d’action. Ces molécules constituent des candidats prometteurs pour une chimiothérapie sélective du glioblastome
CDK5 is a protein kinase ubiquitously expressed but mainly activated in the central nervous system, where it plays an important role in neuronal functions such as synaptic transmission, axonal guidance and migration, synaptic plasticity and neuronal development. CDK5 is associated with p35 protein at the cell membrane, then activated by calpain-mediated cleavage of p35 into p25, which promotes relocalization of CDK5/p25 into the cytoplasm. CDK5/p25 phosphorylates a wide variety of substrates including Tau, thereby contributing to appearance of neurofibrillary plaques responsable for neurodegenerative pathologies such as comme Alzheimer’s et Parkinson’s, when hyperactivated. More recent studies suggest that CDK5 expression and hyperactivation are involved in glioblastoma during cell invasion and CDK5 expression has been reported to be correlated with the pathological grade of gliomas. However there are currently no tools available to monitor CDK5/p25 activity in its native cellular environment, in tissues or in tumours, due to an overall lack of reliable tools to quantify dynamic changes in its kinase activity in a sensitive and continuous fashion. Furthermore, few inhibitors are currently available to target CDK5/p25 in a specific fashion and most of them are ATP competitive inhibitors.The first goal of my thesis was to develop a fluorescent peptide biosensor named CDKACT5, that specifically reports on recombinant CDK5/p25 and on endogenous CDK5 activity in cell extracts in a dynamic and reversible fashion following stimulation or inhibition of this kinase. Once validated in vitro, this biosensor was applied to detect alterations in CDK5/p25 activity in different glioblastoma cell lines in fluorescent kinase activity assays. Finally CDKACT5 was introduced into cultured neuronal cells to monitor dynamic changes in CDK5/p25 activity by fluorescence imaging and time-lapse microscopy.The second goal of my thesis project consisted in developing a conformational fluorescent biosensor to identify non-ATP competitive inhibitors targeting the activation loop of CDK5. CDKCONF5 was implemented to perform a high throughput screen of three small molecule libraries. The hits identified were validated and characterized to determine their inhibitory potential in kinase activity and proliferation assays, as well as their mechanism of action. These compounds constitute promising for selective chemotherapy in glioblastoma
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Galvan, Barbara. "Part I, highly sensitive hybridization assays for prostate-specific antigen mRNA based on time-resolved fluorescence and bioluminescence, Part II, fluorometric and time-resolved immunofluorometric assays for protein-tyrosine phosphatase and kinase activity." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 1996. http://www.collectionscanada.ca/obj/s4/f2/dsk3/ftp04/NQ30283.pdf.

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Matôzo, Huita do Couto. "Estudos estruturais do domínio catalítico da proteína tirosina fosfatase eta de rato." Universidade de São Paulo, 2008. http://www.teses.usp.br/teses/disponiveis/76/76132/tde-16012009-042410/.

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A proteína tirosina fosfatase eta de rato (rPTPeta), é uma RPTP transmembranar do tipo classe I. A rPTP eta e seu homólogo DEP-1 provenientes, respectivamente, de ratos e de humanos, estão inibidas em células neoplásicas. Este fenótipo maligno é revertido após reconstituição exógena, o que sugere que a capacidade restauradora da rPTP eta pode ser uma ferramenta importante na terapia de alguns tipos de câncer. Portanto, o objetivo deste projeto incluiu o estudo molecular, biofísico e estrutural do domínio catalítico da rPTPeta (rPTPetaDC). Para isso, sub-clonamos no vetor pET-28a(+) o inserto que codifica para a região C-terminal da rPTPeta . Em seguida, bactérias E. coli da linhagem BL21 (DE3) foram transformadas com o plasmídeo e a proteína recombinante expressada e purificada. A His6-rPTPetaDC purificada teve a cauda de histidina subseqüentemente removida por digestão com trombina. O ponto isoelétrico de 7,3 da proteína de 41kDa foi medido experimentalmente e a sua funcionalidade acessada pelo ensaio de hidrólise do pNPP. A enzima apresentou uma atividade específica de 9nmol/min/microg a qual é compatível com as atividades específicas descritas para as RPTPu, RPTPalfa, PTPB1 e SHP2. A estrutura secundária e a estabilidade da rPTPetaDC recombinante foi analisada por dicroísmo circular e espectroscopia de fluorescência. A rPTPetaDC mostrou-se estável a 18 graus Celsius e propriamente enovelada (Santos, et al., Prot. Expr. Purif., 2005. Anexo A). A proteína foi, em seguida, submetida a diferentes condições de cristalização e a estudos estruturais em solução. Nas condições de 0,1M de MES, pH 6,5 e 20% PEG 10000 cresceram cristais que difrataram na resolução de 1,87Å. Os cristais pertencem ao grupo espacial P2(1)2(1)2(1) com parâmetros de célula unitária: a=46,46; b=63,07; c=111,64 Å, e com uma única molécula por unidade assimétrica (Matozo, et al., Acta crystallogr. F, 2006. Anexo B). A estrutura da rPTPetaDC, em solução, foi analisada usando-se a técnica de SAXS e medidas de anisotropia de fluorescência. Os dados de SAXS mostraram que a proteína, forma dímeros alongados, com Rg de 2,65nm e Dmax de 8,5nm. A conformação da rPTPetaDC analisada por modelos de homologia sugere que seu dímero está mais próxima da estrutura cristalográfica dimérica da RPTPalfa-D1. Alem disso, a caracterização da rPTPetaDC por anisotropia de fluorescência demonstrou que o Kd do dímero da rPTPetaDC é de 21,6 + 2,0uM e a variação da energia livre de Gibbs dímero-monômero é de 7,2kcal/mol (Mtozo, et al., Biophys. J., 2007. Anexo C ).
The rat protein tyrosine phosphatase eta, rPTPeta, is a transmembrane RPTP, with an intracellular portion composed of a unique catalytic region. The rPTPeta and the human homolog DEP-1 are down-regulated in rat and human neoplastic cells, respectively. However, the malignant phenotype is reverted after exogenous reconstitution of rPTPeta, suggesting that its function restoration could be an important tool for gene therapy of several types of cancer. Therefore, the objective of our project aimed on the molecular, biophysical and structural study of the catalytic domain of rPTPeta, rPTPetaDC. We began our study cloning the rPTPetaDC into PET28a(+) vector, followed by its expression in Escherichia coli, and purification. The His6-tag from the rPTPetaDC purified was subsequently removed by thrombin digestion. PhastGel IEF electrophoresis demonstrated that the isoelectric point of the 41kDa was 7.3. To assess the functionality of the rPTPetaDC we used the pNPP hydrolysis assay and observed that the enzyme has a specific activity of 9nmol/min/ug. The experimentally determined rPTPetaDC specific activity showed to be in the same range as the previously reported activities for RPTPu, RPTPalfa, PTPB1 and SHP2. The secondary structure and stability of the recombinant protein was analyzed by circular dichroism and fluorescence spectroscopy. The results demonstrated that rPTPetaDC was stable at 18 Celsius and properly folded (Santos, et al., Prot. Expr. Purif., 2005. In attachment A). Then, the purified protein was submitted to different crystallization conditions and structural studies in solution. Crystals appeared at 0.1M MES, pH 6.5 and 20% PEG 10,000 and diffracted with resolution of 1.87Å. The crystals belong to spatial group P2(1)2(1)2(1) with unit cell parameters of a=46.46, b=63.07, c=111.64Å and contained one molecule for asymmetric unit (Matozo, et al., Acta crystallog. F, 2006. In attachment B). Also, the structural of rPTPetaDC, in solution, was analyzed by SAXS and fluorescence anisotropy. SAXS data showed that the protein forms elongated dimers in solution with an Rg of 2.65nm and a Dmax of 8.5nm. The rPTPetaDC conformation in solution, studied by homology models, suggested that the rPTPetaDC dimer architecture is more closely related to the crystal structure of RPTPalfa-D1. The characterization of rPTPetaDC by fluorescence anisotropy measurements demonstrated that the Kd of the dimer is 21.6 + 2.0uM and the energy Gibbs dimer-monomer is equal to 7.2kcal/mol (Matozo, et al., Bioph. J., 2007. In attachment C).
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Books on the topic "Tyrosine fluorescence"

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Nowak-Thompson, Brian. Biosynthetic studies on the chromophore of pseudobactin from Pseudomonas fluorescens B10. 1993.

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Book chapters on the topic "Tyrosine fluorescence"

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Vekshin, Nikolai L. "Division of Tyrosine and Tryptophan Fluorescence Components." In Photonics of Biopolymers, 56–61. Berlin, Heidelberg: Springer Berlin Heidelberg, 2002. http://dx.doi.org/10.1007/978-3-662-04947-1_7.

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Schumacher, Dominik, Heinrich Leonhardt, Christian P. R. Hackenberger, and Jonas Helma. "One-Step Fluorescent Protein Labeling by Tubulin Tyrosine Ligase." In Methods in Molecular Biology, 167–89. New York, NY: Springer New York, 2019. http://dx.doi.org/10.1007/978-1-4939-9654-4_12.

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Hofmann, Roseanne M., Graham J. Cotton, William Bornman, Emmanual Chang, and Tom W. Muir. "Fluorescent Biosensor for CrkII Phosphorylation by the Abl Tyrosine Kinase." In Peptides: The Wave of the Future, 992–93. Dordrecht: Springer Netherlands, 2001. http://dx.doi.org/10.1007/978-94-010-0464-0_463.

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Berkel, Willem J. H. van, Edwin J. Bakx, Franz Miiller, Wicher J. Weyer, Peter A. Jekel, Jaap J. Beintema, Herman A. Schreuder, et al. "Chemical modification of tyrosine-38 in j>.-hydroxybenzoate hydroxylase from Pseudomonas fluorescens by 5'-Pfluorosulfonylbenzoyladenosine: A probe for the elucidation of the NADPH binding site?" In Flavins and Flavoproteins 1987, edited by D. E. Edmondson and D. B. McCormick, 549–52. Berlin, Boston: De Gruyter, 1987. http://dx.doi.org/10.1515/9783110884715-092.

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Conference papers on the topic "Tyrosine fluorescence"

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Yang, Hui, Xue Xiao, Xuesong Zhao, and Yan Wu. "Intrinsic Fluorescence Spectra of Tryptophan, Tyrosine and Phenyloalanine." In 5th International Conference on Advanced Design and Manufacturing Engineering. Paris, France: Atlantis Press, 2015. http://dx.doi.org/10.2991/icadme-15.2015.46.

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Yang, Hui, Xue Xiao, Xuesong Zhao, and Yan Wu. "Intrinsic fluorescence spectra of tryptophan, tyrosine and phenyloalanine." In Selected Papers of the Chinese Society for Optical Engineering Conferences held October and November 2016, edited by Yueguang Lv, Jialing Le, Hesheng Chen, Jianyu Wang, and Jianda Shao. SPIE, 2017. http://dx.doi.org/10.1117/12.2268397.

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Varghese, Jeena, Subin Thomas, and C. Sudarsanakumar. "L-Tyrosine functionalized ZnO for the fluorescence detection of phenol." In THE 3RD INTERNATIONAL CONFERENCE ON OPTOELECTRONIC AND NANO MATERIALS FOR ADVANCED TECHNOLOGY (icONMAT 2019). Author(s), 2019. http://dx.doi.org/10.1063/1.5093886.

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Sanyal, Gautam, Faith Thompson, and David Puett. "Fluorescence spectroscopic studies of tyrosine environment and ligand binding of plant calmodulin." In OE/LASE '90, 14-19 Jan., Los Angeles, CA, edited by Joseph R. Lakowicz. SPIE, 1990. http://dx.doi.org/10.1117/12.17754.

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Singh, Amit T., and M. M. Khandpekar. "Upconversion fluorescence tyrosine doped LaF3:Dy quantum dots useful in biolabeling and biotagging." In DAE SOLID STATE PHYSICS SYMPOSIUM 2017. Author(s), 2018. http://dx.doi.org/10.1063/1.5028665.

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Brown, David W., Louis J. Libertini, and Enoch W. Small. "Using the decay of intrinsic tyrosine fluorescence of core particles to monitor conformational changes." In OE/LASE '92, edited by Joseph R. Lakowicz. SPIE, 1992. http://dx.doi.org/10.1117/12.58277.

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Lakowicz, Joseph R., Gabor Laczko, Ignacy Gryczynski, Henryk Cherek, Stephen N. Joffe, and John A. Parrish. "A 2 GHz Frequency-Domain Fluorometer; Picosecond Resolution Of Tyrosine Fluorescence And Anisotropy Decays." In Cambridge Symposium-Fiber/LASE '86. SPIE, 1987. http://dx.doi.org/10.1117/12.937326.

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Zhdanova, Nadezda, Evgeny Shirshin, Victor Fadeev, and Alexander Priezzhev. "SDS-binding assay based on tyrosine fluorescence as a tool to determine binding properties of human serum albumin in blood plasma." In Saratov Fall Meeting 2015, edited by Elina A. Genina, Valery V. Tuchin, Vladimir L. Derbov, Dmitry E. Postnov, Igor V. Meglinski, Kirill V. Larin, and Alexander B. Pravdin. SPIE, 2016. http://dx.doi.org/10.1117/12.2229850.

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Zhdanova, N. G., E. A. Shirshin, I. M. Panhishin, and V. V. Fadeev. "Study of Tyrosine to Tryptophan Energy Transfer in Human Serum Albumin in Presence of Surfactant via Steady-State, Nonlinear and Time-Resolved Fluorescence Techniques." In Frontiers in Optics. Washington, D.C.: OSA, 2013. http://dx.doi.org/10.1364/fio.2013.ftu1d.4.

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Asami, Tokiko, Wataru Kawahata, and Masaaki Sawa. "Abstract C94: A novel binding assay to identify inhibitors that bind to inactive forms of Bruton's tyrosine kinase based on fluorescence resonance energy transfer." In Abstracts: AACR-NCI-EORTC International Conference: Molecular Targets and Cancer Therapeutics--Nov 12-16, 2011; San Francisco, CA. American Association for Cancer Research, 2011. http://dx.doi.org/10.1158/1535-7163.targ-11-c94.

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