Academic literature on the topic 'Udp-rhamnose'

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Journal articles on the topic "Udp-rhamnose"

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Rautengarten, C., B. Ebert, I. Moreno, et al. "The Golgi localized bifunctional UDP-rhamnose/UDP-galactose transporter family of Arabidopsis." Proceedings of the National Academy of Sciences 111, no. 31 (2014): 11563–68. http://dx.doi.org/10.1073/pnas.1406073111.

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Feng, Keping, Ridao Chen, Kebo Xie, et al. "A regiospecific rhamnosyltransferase from Epimedium pseudowushanense catalyzes the 3-O-rhamnosylation of prenylflavonols." Organic & Biomolecular Chemistry 16, no. 3 (2018): 452–58. http://dx.doi.org/10.1039/c7ob02763j.

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Wagstaff, Ben A., Azul Zorzoli, and Helge C. Dorfmueller. "NDP-rhamnose biosynthesis and rhamnosyltransferases: building diverse glycoconjugates in nature." Biochemical Journal 478, no. 4 (2021): 685–701. http://dx.doi.org/10.1042/bcj20200505.

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Rhamnose is an important 6-deoxy sugar present in many natural products, glycoproteins, and structural polysaccharides. Whilst predominantly found as the l-enantiomer, instances of d-rhamnose are also found in nature, particularly in the Pseudomonads bacteria. Interestingly, rhamnose is notably absent from humans and other animals, which poses unique opportunities for drug discovery targeted towards rhamnose utilizing enzymes from pathogenic bacteria. Whilst the biosynthesis of nucleotide-activated rhamnose (NDP-rhamnose) is well studied, the study of rhamnosyltransferases that synthesize rham
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KNEIDINGER, Bernd, Suzon LAROCQUE, Jean-Robert BRISSON, Nicolas CADOTTE, and Joseph S. LAM. "Biosynthesis of 2-acetamido-2,6-dideoxy-l-hexoses in bacteria follows a pattern distinct from those of the pathways of 6-deoxy-l-hexoses." Biochemical Journal 371, no. 3 (2003): 989–95. http://dx.doi.org/10.1042/bj20030099.

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6-Deoxy-l-hexoses have been shown to be synthesized from dTDP-d-glucose or GDP-d-mannose so that the gluco/galacto-configuration is converted into the manno/talo-configuration, and manno/talo is switched to gluco/galacto. Our laboratory has been investigating the biosynthesis of 2-acetamido-2,6-dideoxy-l-hexoses in both Gram-positive and Gram-negative bacteria, and in a recent paper we described the biosynthesis of the talo (pneumosamine) and galacto (fucosamine) derivatives from UDP-d-N-acetylglucosamine a 2-acetamido sugar [Kneidinger, O'Riordan, Li, Brisson, Lee and Lam (2003) J. Biol. Chem
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Martinez, Viviana, Miles Ingwers, James Smith, John Glushka, Ting Yang, and Maor Bar-Peled. "Biosynthesis of UDP-4-keto-6-deoxyglucose and UDP-rhamnose in Pathogenic FungiMagnaporthe griseaandBotryotinia fuckeliana." Journal of Biological Chemistry 287, no. 2 (2011): 879–92. http://dx.doi.org/10.1074/jbc.m111.287367.

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Chen, Anna, Na Gu, Jianjun Pei, et al. "Synthesis of Isorhamnetin-3-O-Rhamnoside by a Three-Enzyme (Rhamnosyltransferase, Glycine Max Sucrose Synthase, UDP-Rhamnose Synthase) Cascade Using a UDP-Rhamnose Regeneration System." Molecules 24, no. 17 (2019): 3042. http://dx.doi.org/10.3390/molecules24173042.

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Isorhamnetin-3-O-rhamnoside was synthesized by a highly efficient three-enzyme (rhamnosyltransferase, glycine max sucrose synthase and uridine diphosphate (UDP)-rhamnose synthase) cascade using a UDP-rhamnose regeneration system. The rhamnosyltransferase gene (78D1) from Arabidopsis thaliana was cloned, expressed, and characterized in Escherichia coli. The optimal activity was at pH 7.0 and 45 °C. The enzyme was stable over the pH range of 6.5 to 8.5 and had a 1.5-h half-life at 45 °C. The Vmax and Km for isorhamnetin were 0.646 U/mg and 181 μM, respectively. The optimal pH and temperature for
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Parra-Rojas, Juan Pablo, Asier Largo-Gosens, Tomás Carrasco, et al. "New steps in mucilage biosynthesis revealed by analysis of the transcriptome of the UDP-rhamnose/UDP-galactose transporter 2 mutant." Journal of Experimental Botany 70, no. 19 (2019): 5071–88. http://dx.doi.org/10.1093/jxb/erz262.

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Abstract Upon imbibition, epidermal cells of Arabidopsis thaliana seeds release a mucilage formed mostly by pectic polysaccharides. The Arabidopsis mucilage is composed mainly of unbranched rhamnogalacturonan-I (RG-I), with low amounts of cellulose, homogalacturonan, and traces of xylan, xyloglucan, galactoglucomannan, and galactan. The pectin-rich composition of the mucilage and their simple extractability makes this structure a good candidate to study the biosynthesis of pectic polysaccharides and their modification. Here, we characterize the mucilage phenotype of a mutant in the UDP-rhamnos
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Silva, Elisabete, Ana Rita Marques, Arsénio Mendes Fialho, Ana Teresa Granja, and Isabel Sá-Correia. "Proteins Encoded by Sphingomonas elodea ATCC 31461 rmlA and ugpG Genes, Involved in Gellan Gum Biosynthesis, Exhibit both dTDP- and UDP-Glucose Pyrophosphorylase Activities." Applied and Environmental Microbiology 71, no. 8 (2005): 4703–12. http://dx.doi.org/10.1128/aem.71.8.4703-4712.2005.

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ABSTRACT The commercial gelling agent gellan is a heteropolysaccharide produced by Sphingomonas elodea ATCC 31461. In this work, we carried out the biochemical characterization of the enzyme encoded by the first gene (rmlA) of the rml 4-gene cluster present in the 18-gene cluster required for gellan biosynthesis (gel cluster). Based on sequence homology, the putative rml operon is presumably involved in the biosynthesis of dTDP-rhamnose, the sugar necessary for the incorporation of rhamnose in the gellan repeating unit. Heterologous RmlA was purified as a fused His6-RmlA protein from extracts
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Oka, Takuji, Tadashi Nemoto, and Yoshifumi Jigami. "Functional Analysis ofArabidopsis thalianaRHM2/MUM4, a Multidomain Protein Involved in UDP-D-glucose to UDP-L-rhamnose Conversion." Journal of Biological Chemistry 282, no. 8 (2006): 5389–403. http://dx.doi.org/10.1074/jbc.m610196200.

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Dai, Xinlong, Guifu Zhao, Tianming Jiao, et al. "Involvement of Three CsRHM Genes from Camellia sinensis in UDP–Rhamnose Biosynthesis." Journal of Agricultural and Food Chemistry 66, no. 27 (2018): 7139–49. http://dx.doi.org/10.1021/acs.jafc.8b01870.

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Dissertations / Theses on the topic "Udp-rhamnose"

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Usadel, Björn. "Untersuchungen zur Biosynthese der pflanzlichen Zellwand = [Identification and characterization of genes involved in plant cell wall synthesis]." Phd thesis, Universität Potsdam, 2004. http://opus.kobv.de/ubp/volltexte/2005/294/.

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Even though the structure of the plant cell wall is by and large quite well characterized, its synthesis and regulation remains largely obscure. However, it is accepted that the building blocks of the polysaccharidic part of the plant cell wall are nucleotide sugars. Thus to gain more insight into the cell wall biosynthesis, in the first part of this thesis, plant genes possibly involved in the nucleotide sugar interconversion pathway were identified using a bioinformatics approach and characterized in plants, mainly in Arabidopsis. For the computational identification profile hidden markov m
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