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Journal articles on the topic 'Udp-rhamnose'

Author: Grafiati

Published: 4 June 2021

Last updated: 1 February 2022

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1

Rautengarten, C., B. Ebert, I. Moreno, et al. "The Golgi localized bifunctional UDP-rhamnose/UDP-galactose transporter family of Arabidopsis." Proceedings of the National Academy of Sciences 111, no. 31 (2014): 11563–68. http://dx.doi.org/10.1073/pnas.1406073111.

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2

Feng, Keping, Ridao Chen, Kebo Xie, et al. "A regiospecific rhamnosyltransferase from Epimedium pseudowushanense catalyzes the 3-O-rhamnosylation of prenylflavonols." Organic & Biomolecular Chemistry 16, no. 3 (2018): 452–58. http://dx.doi.org/10.1039/c7ob02763j.

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3

Wagstaff, Ben A., Azul Zorzoli, and Helge C. Dorfmueller. "NDP-rhamnose biosynthesis and rhamnosyltransferases: building diverse glycoconjugates in nature." Biochemical Journal 478, no. 4 (2021): 685–701. http://dx.doi.org/10.1042/bcj20200505.

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Rhamnose is an important 6-deoxy sugar present in many natural products, glycoproteins, and structural polysaccharides. Whilst predominantly found as the l-enantiomer, instances of d-rhamnose are also found in nature, particularly in the Pseudomonads bacteria. Interestingly, rhamnose is notably absent from humans and other animals, which poses unique opportunities for drug discovery targeted towards rhamnose utilizing enzymes from pathogenic bacteria. Whilst the biosynthesis of nucleotide-activated rhamnose (NDP-rhamnose) is well studied, the study of rhamnosyltransferases that synthesize rham

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4

KNEIDINGER, Bernd, Suzon LAROCQUE, Jean-Robert BRISSON, Nicolas CADOTTE, and Joseph S. LAM. "Biosynthesis of 2-acetamido-2,6-dideoxy-l-hexoses in bacteria follows a pattern distinct from those of the pathways of 6-deoxy-l-hexoses." Biochemical Journal 371, no. 3 (2003): 989–95. http://dx.doi.org/10.1042/bj20030099.

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6-Deoxy-l-hexoses have been shown to be synthesized from dTDP-d-glucose or GDP-d-mannose so that the gluco/galacto-configuration is converted into the manno/talo-configuration, and manno/talo is switched to gluco/galacto. Our laboratory has been investigating the biosynthesis of 2-acetamido-2,6-dideoxy-l-hexoses in both Gram-positive and Gram-negative bacteria, and in a recent paper we described the biosynthesis of the talo (pneumosamine) and galacto (fucosamine) derivatives from UDP-d-N-acetylglucosamine a 2-acetamido sugar [Kneidinger, O'Riordan, Li, Brisson, Lee and Lam (2003) J. Biol. Chem

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5

Martinez, Viviana, Miles Ingwers, James Smith, John Glushka, Ting Yang, and Maor Bar-Peled. "Biosynthesis of UDP-4-keto-6-deoxyglucose and UDP-rhamnose in Pathogenic FungiMagnaporthe griseaandBotryotinia fuckeliana." Journal of Biological Chemistry 287, no. 2 (2011): 879–92. http://dx.doi.org/10.1074/jbc.m111.287367.

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6

Chen, Anna, Na Gu, Jianjun Pei, et al. "Synthesis of Isorhamnetin-3-O-Rhamnoside by a Three-Enzyme (Rhamnosyltransferase, Glycine Max Sucrose Synthase, UDP-Rhamnose Synthase) Cascade Using a UDP-Rhamnose Regeneration System." Molecules 24, no. 17 (2019): 3042. http://dx.doi.org/10.3390/molecules24173042.

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Isorhamnetin-3-O-rhamnoside was synthesized by a highly efficient three-enzyme (rhamnosyltransferase, glycine max sucrose synthase and uridine diphosphate (UDP)-rhamnose synthase) cascade using a UDP-rhamnose regeneration system. The rhamnosyltransferase gene (78D1) from Arabidopsis thaliana was cloned, expressed, and characterized in Escherichia coli. The optimal activity was at pH 7.0 and 45 °C. The enzyme was stable over the pH range of 6.5 to 8.5 and had a 1.5-h half-life at 45 °C. The Vmax and Km for isorhamnetin were 0.646 U/mg and 181 μM, respectively. The optimal pH and temperature for

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7

Parra-Rojas, Juan Pablo, Asier Largo-Gosens, Tomás Carrasco, et al. "New steps in mucilage biosynthesis revealed by analysis of the transcriptome of the UDP-rhamnose/UDP-galactose transporter 2 mutant." Journal of Experimental Botany 70, no. 19 (2019): 5071–88. http://dx.doi.org/10.1093/jxb/erz262.

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Abstract Upon imbibition, epidermal cells of Arabidopsis thaliana seeds release a mucilage formed mostly by pectic polysaccharides. The Arabidopsis mucilage is composed mainly of unbranched rhamnogalacturonan-I (RG-I), with low amounts of cellulose, homogalacturonan, and traces of xylan, xyloglucan, galactoglucomannan, and galactan. The pectin-rich composition of the mucilage and their simple extractability makes this structure a good candidate to study the biosynthesis of pectic polysaccharides and their modification. Here, we characterize the mucilage phenotype of a mutant in the UDP-rhamnos

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8

Silva, Elisabete, Ana Rita Marques, Arsénio Mendes Fialho, Ana Teresa Granja, and Isabel Sá-Correia. "Proteins Encoded by Sphingomonas elodea ATCC 31461 rmlA and ugpG Genes, Involved in Gellan Gum Biosynthesis, Exhibit both dTDP- and UDP-Glucose Pyrophosphorylase Activities." Applied and Environmental Microbiology 71, no. 8 (2005): 4703–12. http://dx.doi.org/10.1128/aem.71.8.4703-4712.2005.

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ABSTRACT The commercial gelling agent gellan is a heteropolysaccharide produced by Sphingomonas elodea ATCC 31461. In this work, we carried out the biochemical characterization of the enzyme encoded by the first gene (rmlA) of the rml 4-gene cluster present in the 18-gene cluster required for gellan biosynthesis (gel cluster). Based on sequence homology, the putative rml operon is presumably involved in the biosynthesis of dTDP-rhamnose, the sugar necessary for the incorporation of rhamnose in the gellan repeating unit. Heterologous RmlA was purified as a fused His6-RmlA protein from extracts

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9

Oka, Takuji, Tadashi Nemoto, and Yoshifumi Jigami. "Functional Analysis ofArabidopsis thalianaRHM2/MUM4, a Multidomain Protein Involved in UDP-D-glucose to UDP-L-rhamnose Conversion." Journal of Biological Chemistry 282, no. 8 (2006): 5389–403. http://dx.doi.org/10.1074/jbc.m610196200.

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10

Dai, Xinlong, Guifu Zhao, Tianming Jiao, et al. "Involvement of Three CsRHM Genes from Camellia sinensis in UDP–Rhamnose Biosynthesis." Journal of Agricultural and Food Chemistry 66, no. 27 (2018): 7139–49. http://dx.doi.org/10.1021/acs.jafc.8b01870.

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11

Ma, Liang, Omar Salas, Kyle Bowler, Liat Oren-Young, Maor Bar-Peled, and Amir Sharon. "Genetic alteration of UDP-rhamnose metabolism inBotrytis cinerealeads to the accumulation of UDP-KDG that adversely affects development and pathogenicity." Molecular Plant Pathology 18, no. 2 (2016): 263–75. http://dx.doi.org/10.1111/mpp.12398.

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12

Bockhaus, Nicholas J., Justin D. Ferek, James B. Thoden, and Hazel M. Holden. "The high‐resolution structure of a UDP‐L‐rhamnose synthase from Acanthamoeba polyphaga Mimivirus." Protein Science 29, no. 11 (2020): 2164–74. http://dx.doi.org/10.1002/pro.3928.

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13

Kim, Bong-Gyu, Woo Dam Jung, and Joong-Hoon Ahn. "Cloning and characterization of a putative UDP-rhamnose synthase 1 from Populus euramericana Guinier." Journal of Plant Biology 56, no. 1 (2013): 7–12. http://dx.doi.org/10.1007/s12374-012-0333-2.

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14

Steiner, Kerstin, René Novotny, Kinnari Patel, et al. "Functional Characterization of the Initiation Enzyme of S-Layer Glycoprotein Glycan Biosynthesis in Geobacillus stearothermophilus NRS 2004/3a." Journal of Bacteriology 189, no. 7 (2007): 2590–98. http://dx.doi.org/10.1128/jb.01592-06.

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ABSTRACTThe glycan chain of the S-layer glycoprotein ofGeobacillus stearothermophilusNRS 2004/3a is composed of repeating units [→2)-α-l-Rhap-(1→3)-β-l-Rhap-(1→2)-α-l-Rhap-(1→], with a 2-O-methyl modification of the terminal trisaccharide at the nonreducing end of the glycan chain, a core saccharide composed of two or three α-l-rhamnose residues, and a β-d-galactose residue as a linker to the S-layer protein. In this study, we report the biochemical characterization of WsaP of the S-layer glycosylation gene cluster as a UDP-Gal:phosphoryl-polyprenol Gal-1-phosphate transferase that primes the

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15

Dong, Shengli, Olga N. Chesnokova, Charles L. Turnbough, and David G. Pritchard. "Identification of the UDP-N-Acetylglucosamine 4-Epimerase Involved in Exosporium Protein Glycosylation in Bacillus anthracis." Journal of Bacteriology 191, no. 22 (2009): 7094–101. http://dx.doi.org/10.1128/jb.01050-09.

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ABSTRACT Spores of Bacillus anthracis, the causative agent of anthrax, are enclosed by a loosely fitting exosporium composed of a basal layer and an external hair-like nap. The filaments of the nap are formed by trimers of the collagen-like glycoprotein BclA. The side chains of BclA include multiple copies of two linear rhamnose-containing oligosaccharides, a trisaccharide and a pentasaccharide. The pentasaccharide terminates with the unusual deoxyamino sugar anthrose. Both oligosaccharide side chains are linked to the BclA protein backbone through an N-acetylgalactosamine (GalNAc) residue. To

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16

Zhao, Zhikang, Chuanhong Ren, Linfeng Xie, et al. "Functional analysis of PpRHM1 and PpRHM2 involved in UDP-l-rhamnose biosynthesis in Prunus persica." Plant Physiology and Biochemistry 155 (October 2020): 658–66. http://dx.doi.org/10.1016/j.plaphy.2020.08.011.

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17

Yin, Sen, Ming Liu, and Jian-Qiang Kong. "Functional analyses of OcRhS1 and OcUER1 involved in UDP-L-rhamnose biosynthesis in Ornithogalum caudatum." Plant Physiology and Biochemistry 109 (December 2016): 536–48. http://dx.doi.org/10.1016/j.plaphy.2016.10.029.

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18

Parakkottil Chothi, Madhu, Garry A. Duncan, Andrea Armirotti, et al. "Identification of an l-Rhamnose Synthetic Pathway in Two Nucleocytoplasmic Large DNA Viruses." Journal of Virology 84, no. 17 (2010): 8829–38. http://dx.doi.org/10.1128/jvi.00770-10.

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ABSTRACT Nucleocytoplasmic large DNA viruses (NCLDVs) are characterized by large genomes that often encode proteins not commonly found in viruses. Two species in this group are Acanthocystis turfacea chlorella virus 1 (ATCV-1) (family Phycodnaviridae, genus Chlorovirus) and Acanthamoeba polyphaga mimivirus (family Mimiviridae), commonly known as mimivirus. ATCV-1 and other chlorovirus members encode enzymes involved in the synthesis and glycosylation of their structural proteins. In this study, we identified and characterized three enzymes responsible for the synthesis of the sugar l-rhamnose:

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19

Barreto, Marlen, Eugenia Jedlicki, and David S. Holmes. "Identification of a Gene Cluster for the Formation of Extracellular Polysaccharide Precursors in the Chemolithoautotroph Acidithiobacillus ferrooxidans." Applied and Environmental Microbiology 71, no. 6 (2005): 2902–9. http://dx.doi.org/10.1128/aem.71.6.2902-2909.2005.

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ABSTRACT A cluster of five genes, proposed to be involved in the formation of extracellular polysaccharide (EPS) precursors via the Leloir pathway, have been identified in the acidophilic autotroph Acidithiobacillus ferrooxidans. The order of the genes is luxA-galE-galK-pgm-galM, encoding a LuxA-like protein, UDP-glucose 4-epimerase, galactokinase, phosphoglucomutase, and galactose mutarotase, respectively. The gal cluster forms a single transcriptional unit and is therefore an operon. Two other putative genes of the Leloir pathway, galU, potentially encoding UDP-glucose pyrophosphorylase, and

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20

Degeest, Bart, та Luc De Vuyst. "Correlation of Activities of the Enzymes α-Phosphoglucomutase, UDP-Galactose 4-Epimerase, and UDP-Glucose Pyrophosphorylase with Exopolysaccharide Biosynthesis by Streptococcus thermophilus LY03". Applied and Environmental Microbiology 66, № 8 (2000): 3519–27. http://dx.doi.org/10.1128/aem.66.8.3519-3527.2000.

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ABSTRACT The effects of different carbohydrates or mixtures of carbohydrates as substrates on bacterial growth and exopolysaccharide (EPS) production were studied for the yoghurt starter cultureStreptococcus thermophilus LY03. This strain produces two heteropolysaccharides with the same monomeric composition (galactose and glucose in the ratio 4:1) but with different molecular masses. Lactose and glucose were fermented by S. thermophilusLY03 only when they were used as sole energy and carbohydrate sources. Fructose was also fermented when it was applied in combination with lactose or glucose.

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21

Mikušová, Katarína, Martina Beláňová, Jana Korduláková, et al. "Identification of a Novel Galactosyl Transferase Involved in Biosynthesis of the Mycobacterial Cell Wall." Journal of Bacteriology 188, no. 18 (2006): 6592–98. http://dx.doi.org/10.1128/jb.00489-06.

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ABSTRACT The possibility of the Rv3782 protein of Mycobacterium tuberculosis being a putative galactosyl transferase (GalTr) implicated in galactan synthesis arose from its similarity to the known GalTr Rv3808c, its classification as a nucleotide sugar-requiring inverting glycosyltransferase (GT-2 family), and its location within the “possible arabinogalactan biosynthetic gene cluster” of M. tuberculosis. In order to study the function of the enzyme, active membrane and cell wall fractions from Mycobacterium smegmatis containing the overexpressed Rv3782 protein were incubated with endogenous d

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22

Gu, Na, Cong Qiu, Linguo Zhao, Lihu Zhang, and Jianjun Pei. "Enhancing UDP-Rhamnose Supply for Rhamnosylation of Flavonoids in Escherichia coli by Regulating the Modular Pathway and Improving NADPH Availability." Journal of Agricultural and Food Chemistry 68, no. 35 (2020): 9513–23. http://dx.doi.org/10.1021/acs.jafc.0c03689.

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23

Hsu, Yang-Hsin, Takayoshi Tagami, Kana Matsunaga, et al. "Functional characterization of UDP-rhamnose-dependent rhamnosyltransferase involved in anthocyanin modification, a key enzyme determining blue coloration in Lobelia erinus." Plant Journal 89, no. 2 (2017): 325–37. http://dx.doi.org/10.1111/tpj.13387.

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24

Pei, Jianjun, Anna Chen, Qing Sun, Linguo Zhao, Fuliang Cao, and Feng Tang. "Construction of a novel UDP-rhamnose regeneration system by a two-enzyme reaction system and application in glycosylation of flavonoid." Biochemical Engineering Journal 139 (November 2018): 33–42. http://dx.doi.org/10.1016/j.bej.2018.08.007.

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25

Pandey, Ramesh Prasad, Prakash Parajuli, Ju Yong Shin, et al. "Enzymatic Biosynthesis of Novel Resveratrol Glucoside and Glycoside Derivatives." Applied and Environmental Microbiology 80, no. 23 (2014): 7235–43. http://dx.doi.org/10.1128/aem.02076-14.

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ABSTRACTA UDP glucosyltransferase fromBacillus licheniformiswas overexpressed, purified, and incubated with nucleotide diphosphate (NDP)d- andl-sugars to produce glucose, galactose, 2-deoxyglucose, viosamine, rhamnose, and fucose sugar-conjugated resveratrol glycosides. Significantly higher (90%) bioconversion of resveratrol was achieved with α-d-glucose as the sugar donor to produce four different glucosides of resveratrol: resveratrol 3-O-β-d-glucoside, resveratrol 4′-O-β-d-glucoside, resveratrol 3,5-O-β-d-diglucoside, and resveratrol 3,5,4′-O-β-d-triglucoside. The conversion rates and numbe

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26

Diet, Anouck, Bruce Link, Georg J. Seifert, et al. "The Arabidopsis Root Hair Cell Wall Formation Mutant lrx1 Is Suppressed by Mutations in the RHM1 Gene Encoding a UDP-l-Rhamnose Synthase." Plant Cell 18, no. 7 (2006): 1630–41. http://dx.doi.org/10.1105/tpc.105.038653.

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27

Tabrez, Shams, Mohammed Razeeth Shait Mohammed, Nasimudeen R. Jabir, and Mohammad Imran Khan. "Identification of novel cardiovascular disease associated metabolites using untargeted metabolomics." Biological Chemistry 402, no. 6 (2021): 749–57. http://dx.doi.org/10.1515/hsz-2020-0331.

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Abstract Cardiovascular disease (CVD) remains the leading cause of morbidity and mortality around the world. Early diagnosis of CVD could provide the opportunity for sensible management and better clinical outcome along with the prevention of further progression of the disease. In the current study, we used an untargeted metabolomic approach to identify possible metabolite(s) that associate well with the CVD and could serve either as therapeutic target or disease-associated metabolite. We identified 26 rationally adjusted unique metabolites that were differentially present in the serum of CVD

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28

Wu, Fan, Xiaobo Sun, Bingzhang Zou, et al. "Transcriptional Analysis of Masson Pine (Pinus massoniana) under High CO2 Stress." Genes 10, no. 10 (2019): 804. http://dx.doi.org/10.3390/genes10100804.

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To explore the molecular mechanism of the response of Masson pine (Pinus massoniana), the main coniferous tree in southern China, to high CO2 stress, transcriptome sequencing was carried out to analyze the genome-wide responses of annual seedlings under different durations (0 h, 6 h, 12 h and 24 h) of high CO2 stress. The results showed that a total of 3080/1908, 3110/2115 and 2684/1483 genes were up-/down-regulated after 6 h, 12 h and 24 h of treatment, respectively, compared with control check group (CK, 0 h). Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis showed that most of these

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29

Ma, Liang, Omar Salas, Kyle Bowler, Maor Bar-Peled, and Amir Sharon. "UDP-4-Keto-6-Deoxyglucose, a Transient Antifungal Metabolite, Weakens the Fungal Cell Wall Partly by Inhibition of UDP-Galactopyranose Mutase." mBio 8, no. 6 (2017). http://dx.doi.org/10.1128/mbio.01559-17.

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ABSTRACT Can accumulation of a normally transient metabolite affect fungal biology? UDP-4-keto-6-deoxyglucose (UDP-KDG) represents an intermediate stage in conversion of UDP-glucose to UDP-rhamnose. Normally, UDP-KDG is not detected in living cells, because it is quickly converted to UDP-rhamnose by the enzyme UDP-4-keto-6-deoxyglucose-3,5-epimerase/-4-reductase (ER). We previously found that deletion of the er gene in Botrytis cinerea resulted in accumulation of UDP-KDG to levels that were toxic to the fungus due to destabilization of the cell wall. Here we show that these negative effects ar

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30

Celiz-Balboa, Jonathan, Asier Largo-Gosens, Juan Pablo Parra-Rojas, et al. "Functional Interchangeability of Nucleotide Sugar Transporters URGT1 and URGT2 Reveals That urgt1 and urgt2 Cell Wall Chemotypes Depend on Their Spatio-Temporal Expression." Frontiers in Plant Science 11 (December 8, 2020). http://dx.doi.org/10.3389/fpls.2020.594544.

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Nucleotide sugar transporters (NSTs) are Golgi-localized proteins that play a role in polysaccharide biosynthesis by transporting substrates (nucleotide sugars) from the cytosol into the Golgi apparatus. In Arabidopsis, there is an NST subfamily of six members, called URGTs, which transport UDP-rhamnose and UDP-galactose in vitro. URGTs are very similar in protein sequences, and among them, URGT1 and URGT2 are highly conserved in protein sequence and also showed very similar kinetic parameters toward UDP-rhamnose and UDP-galactose in vitro. Despite the similarity in sequence and in vitro funct

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31

Li, Jia, Isidore Mosongo, Han Li, et al. "Identification and Characterization of a Trillin Rhamnosyltransferase From Dioscorea zingiberensis." Frontiers in Plant Science 12 (August 6, 2021). http://dx.doi.org/10.3389/fpls.2021.713036.

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Dioscorea zingiberensis accumulates abundant steroidal saponins, such as dioscin, which is the principal bioactive ingredient displaying a wide range of pharmacological activities. Diosgenin is the aglycone of dioscin, and recently, genes encoding cytochrome P450 enzymes in the late steps of diosgenin biosynthesis have been isolated. Diosgenin was successfully synthesized in the cholesterol-producing yeasts. From diosgenin to dioscin, one glucose and two rhamnose groups need to be added. Although genes encoding UDP-glucosyltransferases converting diosgenin to trillin were isolated, genes encod

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32

Zong, Guangning, Shuang Fei, Xiao Liu та ін. "Crystal structures of rhamnosyltransferase UGT 89C1 from Arabidopsis thaliana reveal the molecular basis of sugar donor specificity for UDP ‐β‐ l ‐rhamnose and rhamnosylation mechanism". Plant Journal, 22 квітня 2019. http://dx.doi.org/10.1111/tpj.14321.

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