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Journal articles on the topic 'Unrestricted Sequences'

Author: Grafiati

Published: 5 June 2025

Last updated: 2 August 2025

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1

D, Maheswari, Malini Devi B, and Devibala S. "Unrestricted Mersenne and Mersenne-Lucas Hybrid Sequences." Indian Journal of Science and Technology 16, no. 41 (2023): 3591–98. https://doi.org/10.17485/IJST/v16i41.1726.

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Abstract <strong>Objectives:</strong> The creation of Unrestricted Mersenne and Mersenne-Lucas Hybrid Sequences is the goal.<strong> Methods:</strong> Consider Mersenne and Mersenne-Lucas sequences associated with hybrid numbers. Then choosing the coefficients of hybrid numbers as arbitrary to find recurrence relations, generating functions and Binet formulas for the above sequences, and verifying the same through well-known identities. <strong>Findings:</strong> An infinite number of terms of the unrestricted Mersenne and Mersenne-Lucas hybrid sequences are found. We

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2

D, Maheswari, Malini Devi B, and Devibala S. "Unrestricted Mersenne and Mersenne-Lucas Hybrid Sequences." Indian Journal of Science and Technology 16, no. 41 (2023): 3591–98. https://doi.org/10.17485/IJST/v16i41.1726.

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Abstract <strong>Objectives:</strong> The creation of Unrestricted Mersenne and Mersenne-Lucas Hybrid Sequences is the goal.<strong> Methods:</strong> Consider Mersenne and Mersenne-Lucas sequences associated with hybrid numbers. Then choosing the coefficients of hybrid numbers as arbitrary to find recurrence relations, generating functions and Binet formulas for the above sequences, and verifying the same through well-known identities. <strong>Findings:</strong> An infinite number of terms of the unrestricted Mersenne and Mersenne-Lucas hybrid sequences are found. We

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3

D, Maheswari, Malini Devi B, and Devibala S. "Unrestricted Mersenne and Mersenne-Lucas Hybrid Sequences." Indian Journal of Science and Technology 16, no. 41 (2023): 3591–98. https://doi.org/10.17485/IJST/v16i41.1726.

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Abstract <strong>Objectives:</strong> The creation of Unrestricted Mersenne and Mersenne-Lucas Hybrid Sequences is the goal.<strong> Methods:</strong> Consider Mersenne and Mersenne-Lucas sequences associated with hybrid numbers. Then choosing the coefficients of hybrid numbers as arbitrary to find recurrence relations, generating functions and Binet formulas for the above sequences, and verifying the same through well-known identities. <strong>Findings:</strong> An infinite number of terms of the unrestricted Mersenne and Mersenne-Lucas hybrid sequences are found. We

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4

D, Maheswari, Malini Devi B, and Devibala S. "Unrestricted Mersenne and Mersenne-Lucas Hybrid Sequences." Indian Journal of Science and Technology 16, no. 41 (2023): 3591–98. https://doi.org/10.17485/IJST/v16i41.1726.

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Abstract <strong>Objectives:</strong> The creation of Unrestricted Mersenne and Mersenne-Lucas Hybrid Sequences is the goal.<strong> Methods:</strong> Consider Mersenne and Mersenne-Lucas sequences associated with hybrid numbers. Then choosing the coefficients of hybrid numbers as arbitrary to find recurrence relations, generating functions and Binet formulas for the above sequences, and verifying the same through well-known identities. <strong>Findings:</strong> An infinite number of terms of the unrestricted Mersenne and Mersenne-Lucas hybrid sequences are found. We

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5

D, Maheswari, Malini Devi B, and Devibala S. "Unrestricted Mersenne and Mersenne-Lucas Hybrid Sequences." Indian Journal of Science and Technology 16, no. 41 (2023): 3591–98. https://doi.org/10.17485/IJST/v16i41.1726.

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Abstract <strong>Objectives:</strong> The creation of Unrestricted Mersenne and Mersenne-Lucas Hybrid Sequences is the goal.<strong> Methods:</strong> Consider Mersenne and Mersenne-Lucas sequences associated with hybrid numbers. Then choosing the coefficients of hybrid numbers as arbitrary to find recurrence relations, generating functions and Binet formulas for the above sequences, and verifying the same through well-known identities. <strong>Findings:</strong> An infinite number of terms of the unrestricted Mersenne and Mersenne-Lucas hybrid sequences are found. We

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6

Maheswari, D., B. Malini Devi, and S. Devibala. "Unrestricted Mersenne and Mersenne-Lucas Hybrid Sequences." Indian Journal Of Science And Technology 16, no. 41 (2023): 3591–98. http://dx.doi.org/10.17485/ijst/v16i41.1726.

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7

D. Maheswari and S. Devibala. "UNRESTRICTED MERSENNE AND MERSENNE LUCAS HYBRID QUATERNIONS." jnanabha 54, no. 02 (2024): 113–19. https://doi.org/10.58250/jnanabha.2024.54210.

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In this paper, we introduce arbitrary coefficients of Mersenne and Mersenne Lucas hybrid quaternions. Then, we provide Binet formulas, generating functions, along with few relationships connecting them. Also, present some well-known identities for these sequences.

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8

Popping, Stephanie, Lize Cuypers, Mark A. A. Claassen, et al. "Persistent Transmission of HCV among Men Who Have Sex with Men despite Widespread Screening and Treatment with Direct-Acting Antivirals." Viruses 14, no. 9 (2022): 1953. http://dx.doi.org/10.3390/v14091953.

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Background: In the Netherlands, unrestricted access to direct-acting antivirals (DAAs) halved the incidence of acute hepatitis C virus (HCV) infections among HIV-infected men who have sex with men (MSM). To develop strategies that can further reduce the spread of HCV, it is important to understand the transmission dynamics of HCV. We used phylogenetic analysis of a dense sample of MSM to provide insight into the impact of unrestricted access to DAAs on HCV transmission in the Netherlands and in Belgium. Methods: We included 89 MSM that were recently infected with HCV genotype 1a in ten Dutch a

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Marcu, Daniel. "The Rhetorical Parsing of Unrestricted Texts: A Surface-based Approach." Computational Linguistics 26, no. 3 (2000): 395–448. http://dx.doi.org/10.1162/089120100561755.

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Coherent texts are not just simple sequences of clauses and sentences, but rather complex artifacts that have highly elaborate rhetorical structure. This paper explores the extent to which well-formed rhetorical structures can be automatically derived by means of surface-form-based algorithms. These algorithms identify discourse usages of cue phrases and break sentences into clauses, hypothesize rhetorical relations that hold among textual units, and produce valid rhetorical structure trees for unrestricted natural language texts. The algorithms are empirically grounded in a corpus analysis of

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10

Geyken, Alexander, and Jordan Boyd-Graber. "Automatic classification of multi-word expressions in print dictionaries." Lingvisticæ Investigationes. International Journal of Linguistics and Language Resources 26, no. 2 (2004): 187–202. http://dx.doi.org/10.1075/li.26.2.03gey.

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Summary This work demonstrates the assignment of multi-word expressions in print dictionaries to POS classes with minimal linguistic resources. In this application, 32,000 entries from the Wörterbuch der deutschen Idiomatik (H. Schemann 1993) were classified using an inductive description of POS sequences in conjunction with a Brill Tagger trained on manually tagged idiomatic entries. This process assigned categories to 86% of entries with 88% accuracy. This classification supplies a meaningful preprocessing step for further applications: the resulting POS-sequences for all idiomatic entries m

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11

Callan, David, Toufik Mansour, and Mark Shattuck. "Some identities for derangement and Ward number sequences and related bijections." Pure Mathematics and Applications 25, no. 2 (2015): 132–43. http://dx.doi.org/10.1515/puma-2015-0013.

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Abstract We establish an alternating sum identity for three classes of singleton-free set partitions wherein the number of elements minus the number of blocks is fixed: (i) permutations, that is, partitions into cycles, (ii) unrestricted partitions, and (iii) contents-ordered partitions. Both algebraic and combinatorial proofs are given, the latter making use of a sign-changing involution in each ease. As a consequence, combinatorial proofs are found of specific cases of recent identities of Gould et al. involving both kinds of Stirling numbers.

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Bhanotar, Shailesh A. "On Some Important Sequences and Their Relation with Pythagorean - Fermat Triples." Journal of Advanced Engineering and Computation 6, no. 4 (2022): 276. http://dx.doi.org/10.55579/jaec.202264.383.

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This article introduces some important sequences and their connection with the hypotenuse of the Fermat family triangle with the NSW, Jha, and Pell sequences. Defining an exciting fact about the sequence, {3; 17; 99; 577; ...}, which consists of the first leg, has a corresponding second leg is an even perfect square such that the triple will be Pythagorean triple. Moreover, it shows the relation between Jha and NSW sequences.This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestr

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13

Pollock, D. "Filters, Waves and Spectra." Econometrics 6, no. 3 (2018): 35. http://dx.doi.org/10.3390/econometrics6030035.

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Econometric analysis requires filtering techniques that are adapted to cater to data sequences that are short and that have strong trends. Whereas the economists have tended to conduct their analyses in the time domain, the engineers have emphasised the frequency domain. This paper places its emphasis in the frequency domain; and it shows how the frequency-domain methods can be adapted to cater to short trended sequences. Working in the frequency domain allows an unrestricted choice to be made of the frequency response of a filter. It also requires that the data should be free of trends. Metho

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SOMIA, N., G. S. RASH, M. WACHOWIAK, and A. GUPTA. "The Initiation and Sequence of Digital Joint Motion." Journal of Hand Surgery 23, no. 6 (1998): 792–95. http://dx.doi.org/10.1016/s0266-7681(98)80099-5.

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We studied the initiation and sequence of digital joint motion during unrestricted flexion and extension using a 3-D motion analysis of all fingers moving simultaneously. Our results showed that motion started in a single joint in 83% of flexion and 80% of extension cycles. The DIP joint initiated flexion and extension in the index, middle, and ring fingers, but in the little finger, flexion started in the PIP joint, and extension in the MP joint. The two most frequent sequences of joint movement during flexion of the three radial fingers were DIP-PIP-MP and PIP-DIP-MP. The two most frequent s

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15

Sherman, L. A., and A. M. Lara. "Unrestricted recognition of a nonpeptide antigen by CD8+ cytolytic T lymphocytes." Journal of Immunology 143, no. 11 (1989): 3444–47. http://dx.doi.org/10.4049/jimmunol.143.11.3444.

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Abstract CD8+ murine CTL that are specific for an unusual nonpeptide Ag, the heme moiety of hemoglobin, have been derived by in vitro stimulation of spleen cells with hemin. Such CTL demonstrate a requirement for the expression of class I Ag on target cells, yet appear to be unrestricted to the extent that both syngeneic and allogeneic targets precoated with hemin are sensitive to lysis. A series of CTL clones with specificity for hemin was derived from C57BL/6 mice. They exhibited the same type of promiscuous recognition that was observed in CTL populations from a number of different strains.

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McKinley, Paul J., Yolanda G. Quevedo-Converse, and Lowell T. Crow. "Effects of Alcohol on Variability-Contingent Reinforcement in Human Subjects." Psychological Reports 64, no. 2 (1989): 391–96. http://dx.doi.org/10.2466/pr0.1989.64.2.391.

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Subjects responded under LAG-5 reinforcement conditions after consuming alcohol in table wine (0.4 g/kg ethanol). For reinforcement (points), a four-response sequence from two buttons was required which differed from the previous five sequences of four responses. In addition, some subjects responded under restricted conditions in which sequences were limited to those of moving a cursor within a 3 × 3 matrix, while other subjects had no such restrictions. Also some subjects worked alone while others were accompanied by an experimenter. Analysis showed that compared to controls, men in the unres

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Pérez-Leroux, Ana, Alexander Tough, Erin Pettibone, and Crystal Chen. "Restrictions on ordering of adjectives in Spanish." Borealis – An International Journal of Hispanic Linguistics 9, no. 1 (2020): 181–208. http://dx.doi.org/10.7557/1.9.1.5277.

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Abstract. Sequences of multiple modifying adjectives are subject to poorly understood lexical ordering restrictions. There are certain commonalities to these restrictions across languages, as well as substantive language variation. Ordering restrictions in Spanish are still under empirical debate, with some proposing strict ordering for direct modifier adjectives; others proposing broad ordering restrictions based on the contrast between intersective and non-intersective adjectives, and yet others raising the possibility that adjectival order is fully unrestricted. The goal of the present stud

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18

LI, Zhiyuan, Zhilong HUANG, Junhui WANG, et al. "Formation and Evolution Mechanism of High‐quality Reservoirs in the Lacustrine Hyperpycnal System: The 2nd Member of the Lower Jurassic Sangonghe Formation, Qiudong Subsag, Turpan–Hami Basin, NW China." Acta Geologica Sinica - English Edition 98, no. 6 (2024): 1533–56. https://doi.org/10.1111/1755-6724.15257.

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AbstractHyperpycnal deposits has gradually emerged as a current research hotspot, with a special focus on lacustrine hyperpycnal deposits. However, our understanding of the formation mechanism and distribution of high‐quality reservoirs in hyperpycnal deposits remains insufficient. In this study, the formation mechanism and distribution of high‐quality reservoirs in the second member of the Sangonghe Formation are studied through sedimentology, petrology, and geochemistry, and 10 types of lithofacies were identified in the depositional sequences of the hyperpycnal flow. These can be summarized

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19

Beldjord, K., C. Beldjord, E. Macintyre, P. Even, and F. Sigaux. "Peripheral selection of V delta 1+ cells with restricted T cell receptor delta gene junctional repertoire in the peripheral blood of healthy donors." Journal of Experimental Medicine 178, no. 1 (1993): 121–27. http://dx.doi.org/10.1084/jem.178.1.121.

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To characterize the T cell receptor (TCR) repertoire expressed by the V delta 1+ gamma/delta T cell population, we have studied the V delta 1-J delta 1 junctional sequences from peripheral blood samples of healthy donors. We show that, surprisingly, this repertoire is restricted in most healthy adults, with a donor-specific and relatively stable pattern, whereas this repertoire remains unrestricted in infants, and is similar to that of thymocytes. These data contrast with the general assumption that the junctional repertoire of V delta 1+ gamma/delta T cells is extensive, and strongly suggest

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Pattabiraman, Nimeshika, Mary Morgan-Richards, Ralph Powlesland, and Steven A. Trewick. "Unrestricted gene flow between two subspecies of translocated brushtail possums (Trichosurus vulpecula) in Aotearoa New Zealand." Biological Invasions 24, no. 1 (2021): 247–60. http://dx.doi.org/10.1007/s10530-021-02635-z.

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AbstractTwo lineages of brushtail possums (Trichosurus vulpecula) were historically introduced to Aotearoa New Zealand, and these two subspecies have different phenotypic forms. Despite over 100 years of potential interbreeding, they appear to retain morphological differences, which may indicate reproductive isolation. We examined this using population samples from a confined landscape and scored each specimen for phenotype using a number of fur colour traits. This resulted in a bimodal trait distribution expected for segregated grey and black lineages. We also sought evidence for genetic part

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Han, Jian, Chunlin Wang, Catherine Sanders, et al. "Comprehensive and semi-quantitative TCR repertoire analysis with a novel multiplex PCR method and 454 sequencing (85.3)." Journal of Immunology 184, no. 1_Supplement (2010): 85.3. http://dx.doi.org/10.4049/jimmunol.184.supp.85.3.

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Abstract CDR3 sequences, composed by V(D)J combination, form the center of the antigen binding site where they often play a critical role in defining the affinity and specificity of the receptor for individual peptide-MHC complexes of both the TCRα and TCRβ chains. The goal of our study was to produce comprehensive, unrestricted profiles of TCR diversity among key developmental and effector subsets of T cells isolated from the blood of a single, healthy donor at sequence-level resolution using a novel multiplex PCR method combined with Roche 454 Life Sciences high-throughput sequencing technol

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Riley, David A., Tim J. Pearce, Eliza Mathia, Ken Ratcliffe, and John Martin. "The application of elemental geochemistry to UK onshore unconventional plays." Geological Society, London, Petroleum Geology Conference series 8, no. 1 (2016): 585–94. http://dx.doi.org/10.1144/pgc8.8.

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AbstractThe Namurian and Westphalian sequences from the onshore well Scaftworth-B2, located in the Gainsborough Trough, central England, have been analysed for whole-rock inorganic geochemical data via inductively coupled plasma optical emission spectrometry (ICP-OES) and mass spectrometry (MS). The changes within key elements, and elemental ratios, results in a chemostratigraphic zonation scheme consisting of eight chemostratigraphic sequences and 13 chemostratigraphic packages, providing the type zonation for the Bowland Shale and overlying formations. Mineralogical data are provided by whol

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SANTAMARÍA, JESÚS, and LOURDES ARAUJO. "Pattern-based unsupervised parsing method." Natural Language Engineering 22, no. 3 (2014): 397–422. http://dx.doi.org/10.1017/s1351324914000072.

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AbstractWe have developed a heuristic method for unsupervised parsing of unrestricted text. Our method relies on detecting certain patterns of part-of-speech tag sequences of words in sentences. This detection is based on statistical data obtained from the corpus and allows us to classify part-of-speech tags into classes that play specific roles in the parse trees. These classes are then used to construct the parse tree of new sentences via a set of deterministic rules. Aiming to asses the viability of the method on different languages, we have tested it on English, Spanish, Italian, Hebrew, G

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LANDING, ED, STEPHEN R. WESTROP, and JOHN D. KEPPIE. "Terminal Cambrian and lowest Ordovician succession of Mexican West Gondwana: biotas and sequence stratigraphy of the Tiñu Formation." Geological Magazine 144, no. 6 (2007): 909–36. http://dx.doi.org/10.1017/s0016756807003585.

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AbstractThe Tiñu Formation of Oaxaca State is the only fossiliferous lower Palaeozoic unit between the Laurentian platform in northwest Mexico and Gondwanan successions in Andean South America. The Tiñu traditionally has been referred to the Lower Ordovician (Tremadoc) and regarded as having a provincially mixed fauna with Laurentian, Avalonian, and Gondwanan elements. Bio- and lithostratigraphic re-evaluation demonstrates that the Tiñu is a Gondwanan, passive margin succession. It includes a lower, thin (to 16 m), condensed, uppermost Cambrian Yudachica Member (new). The Yudachica nonconforma

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Morozov, Pavel, Tatyana Sitnikova, Gary Churchill, Francisco José Ayala, and Andrey Rzhetsky. "A New Method for Characterizing Replacement Rate Variation in Molecular Sequences: Application of the Fourier and Wavelet Models to Drosophila and Mammalian Proteins." Genetics 154, no. 1 (2000): 381–95. http://dx.doi.org/10.1093/genetics/154.1.381.

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Abstract We propose models for describing replacement rate variation in genes and proteins, in which the profile of relative replacement rates along the length of a given sequence is defined as a function of the site number. We consider here two types of functions, one derived from the cosine Fourier series, and the other from discrete wavelet transforms. The number of parameters used for characterizing the substitution rates along the sequences can be flexibly changed and in their most parameter-rich versions, both Fourier and wavelet models become equivalent to the unrestricted-rates model,

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Jung, A., G. Baretton, M. Dietel, et al. "The German quality assurance system for the molecular-pathological detection of KRAS-mutations in colorectal cancer." Journal of Clinical Oncology 27, no. 15_suppl (2009): 4018. http://dx.doi.org/10.1200/jco.2009.27.15_suppl.4018.

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4018 Background: In the beginning of 2008 the EMEA (European Medicines Agency) approved with panitumumab for the first time an EGFR (epidermal growth factor receptor) targeting therapy for patients with metastatic colorectal cancer overexpressing the EGFR and showing wildtypic sequences in the KRAS gene as a predictive biomarker. Thus, the need for assuring the quality of laboratories emerged. The German Society for Pathology in cooperation with the Federation of the German Pathologist supported by an unrestricted financial grant of Amgen Germany arranged a quality assurance system (QAS). In t

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27

Kutscher, Anna. "Die Partikeln schon und noch in der linearen Abfolge mit Temporaladverbien." Linguistik Online 100, no. 7 (2019): 201–33. http://dx.doi.org/10.13092/lo.100.6032.

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The particles schon and noch in German add an aspectual reading to events in different assertions. While schon tends to a perfective reading of an event, an imperfective reading appears with noch, hence both particles have a similar function on the event modification. Overtly, they are located unrestricted in the middle field of a German clause and can freely change their position towards temporal adverbs such as heute, jetzt, bald etc. It seems that syntax does not have an impact to order schon heute or heute schon. This variation is of main interest of the paper: Is there a linear restrictio

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28

de Vrij, Nicky, Pieter Meysman, Sofie Gielis, Wim Adriaensen, Kris Laukens, and Bart Cuypers. "HLA-DRB1 Alleles Associated with Lower Leishmaniasis Susceptibility Share Common Amino Acid Polymorphisms and Epitope Binding Repertoires." Vaccines 9, no. 3 (2021): 270. http://dx.doi.org/10.3390/vaccines9030270.

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Susceptibility for leishmaniasis is largely dependent on host genetic and immune factors. Despite the previously described association of human leukocyte antigen (HLA) gene cluster variants as genetic susceptibility factors for leishmaniasis, little is known regarding the mechanisms that underpin these associations. To better understand this underlying functionality, we first collected all known leishmaniasis-associated HLA variants in a thorough literature review. Next, we aligned and compared the protection- and risk-associated HLA-DRB1 allele sequences. This identified several amino acid po

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Fratini, Emiliano, Marianna Nicoletta Rossi, Lucrezia Spagoni, et al. "Molecular Characterization of Kunitz-Type Protease Inhibitors from Blister Beetles (Coleoptera, Meloidae)." Biomolecules 12, no. 7 (2022): 988. http://dx.doi.org/10.3390/biom12070988.

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Protease inhibitors are widely studied since the unrestricted activity of proteases can cause extensive organ lesions. In particular, elastase activity is involved in the pathophysiology of acute lung injury, for example during SARS-CoV-2 infection, while serine proteases and thrombin-like proteases are involved in the development and/or pathology of the nervous system. Natural protease inhibitors have the advantage to be reversible and with few side effects and thus are increasingly considered as new drugs. Kunitz-type protease inhibitors (KTPIs), reported in the venom of various organisms, s

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Dario, Maria Augusta, Ricardo Moratelli, Philipp Schwabl, Ana Maria Jansen, Martin S. Llewellyn, and Carlos A. Buscaglia. "Small subunit ribosomal metabarcoding reveals extraordinary trypanosomatid diversity in Brazilian bats." PLOS Neglected Tropical Diseases 11, no. 7 (2017): e0005790. https://doi.org/10.5281/zenodo.13484714.

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(Uploaded by Plazi for the Bat Literature Project) Background Bats are a highly successful, globally dispersed order of mammals that occupy a wide array of ecological niches. They are also intensely parasitized and implicated in multiple viral, bacterial and parasitic zoonoses. Trypanosomes are thought to be especially abundant and diverse in bats. In this study, we used 18S ribosomal RNA metabarcoding to probe bat trypanosome diversity in unprecedented detail. Editor: Carlos A. Buscaglia, Instituto de Investigaciones Biotecnolo´gicas, ARGENTINA Received: April 13, 2017 Accepted: July 10, 2017

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Dario, Maria Augusta, Ricardo Moratelli, Philipp Schwabl, Ana Maria Jansen, Martin S. Llewellyn, and Carlos A. Buscaglia. "Small subunit ribosomal metabarcoding reveals extraordinary trypanosomatid diversity in Brazilian bats." PLOS Neglected Tropical Diseases 11, no. 7 (2017): e0005790. https://doi.org/10.5281/zenodo.13484714.

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(Uploaded by Plazi for the Bat Literature Project) Background Bats are a highly successful, globally dispersed order of mammals that occupy a wide array of ecological niches. They are also intensely parasitized and implicated in multiple viral, bacterial and parasitic zoonoses. Trypanosomes are thought to be especially abundant and diverse in bats. In this study, we used 18S ribosomal RNA metabarcoding to probe bat trypanosome diversity in unprecedented detail. Editor: Carlos A. Buscaglia, Instituto de Investigaciones Biotecnolo´gicas, ARGENTINA Received: April 13, 2017 Accepted: July 10, 2017

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32

Dario, Maria Augusta, Ricardo Moratelli, Philipp Schwabl, Ana Maria Jansen, Martin S. Llewellyn, and Carlos A. Buscaglia. "Small subunit ribosomal metabarcoding reveals extraordinary trypanosomatid diversity in Brazilian bats." PLOS Neglected Tropical Diseases 11, no. 7 (2017): e0005790. https://doi.org/10.5281/zenodo.13484714.

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(Uploaded by Plazi for the Bat Literature Project) Background Bats are a highly successful, globally dispersed order of mammals that occupy a wide array of ecological niches. They are also intensely parasitized and implicated in multiple viral, bacterial and parasitic zoonoses. Trypanosomes are thought to be especially abundant and diverse in bats. In this study, we used 18S ribosomal RNA metabarcoding to probe bat trypanosome diversity in unprecedented detail. Editor: Carlos A. Buscaglia, Instituto de Investigaciones Biotecnolo´gicas, ARGENTINA Received: April 13, 2017 Accepted: July 10, 2017

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Dario, Maria Augusta, Ricardo Moratelli, Philipp Schwabl, Ana Maria Jansen, Martin S. Llewellyn, and Carlos A. Buscaglia. "Small subunit ribosomal metabarcoding reveals extraordinary trypanosomatid diversity in Brazilian bats." PLOS Neglected Tropical Diseases 11, no. 7 (2017): e0005790. https://doi.org/10.5281/zenodo.13484714.

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(Uploaded by Plazi for the Bat Literature Project) Background Bats are a highly successful, globally dispersed order of mammals that occupy a wide array of ecological niches. They are also intensely parasitized and implicated in multiple viral, bacterial and parasitic zoonoses. Trypanosomes are thought to be especially abundant and diverse in bats. In this study, we used 18S ribosomal RNA metabarcoding to probe bat trypanosome diversity in unprecedented detail. Editor: Carlos A. Buscaglia, Instituto de Investigaciones Biotecnolo´gicas, ARGENTINA Received: April 13, 2017 Accepted: July 10, 2017

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Sullivan, Delaney K., Eissa Albinali, Mayuko Boffelli, and Lior Pachter. "Abstract 6246: De novo mutation discovery in a mouse model and a human patient sample of non-Hodgkin's lymphoma." Cancer Research 84, no. 6_Supplement (2024): 6246. http://dx.doi.org/10.1158/1538-7445.am2024-6246.

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Abstract Cancer encompasses many different diseases, all typically involving an accumulation of genetic alterations. However, despite the genomic complexity of this group of diseases, cancer genomic studies typically rely on sequence alignment to a "reference genome" prior to analysis. Such approaches can provide gene expression quantification of known, annotated genes. However, they miss the detection of fusion genes, novel transcripts, virus insertions, and other genetic insults that may be present in cancer beyond an altered gene expression profile. Here, we develop a workflow for de novo i

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Yee, S. P., D. Mock, P. Greer, et al. "Lymphoid and mesenchymal tumors in transgenic mice expressing the v-fps protein-tyrosine kinase." Molecular and Cellular Biology 9, no. 12 (1989): 5491–99. http://dx.doi.org/10.1128/mcb.9.12.5491-5499.1989.

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src, abl, and fps/fes are prototypes for a family of genes encoding nonreceptor protein-tyrosine kinases. The oncogenic potential of the v-fps protein-tyrosine kinase was investigated by introduction of the gag-fps coding sequence of Fujinami sarcoma virus into the mouse germ line. Transgenic mice with v-fps under the transcriptional control of a 5' human beta-globin promoter (GF) or with both 5' and 3' beta-globin regulatory sequences (GEF) were viable. Unexpectedly, both GF and GEF transgenes were expressed in a wide variety of tissues and induced a spectrum of benign and malignant tumors. T

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Krey, K. L., W. R. Cooper, and J. M. Renkema. "Revealing the Diet of Generalist Insect Predators in Strawberry Fields: Not Only Pests, But Other Predators Beware." Environmental Entomology 49, no. 6 (2020): 1300–1306. http://dx.doi.org/10.1093/ee/nvaa125.

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Abstract Generalist invertebrate predators contribute to pest management in agriculture, providing an important ecosystem service, particularly in organically managed fields. DNA-based methods to study food webs and feeding interactions in unrestricted field conditions have transformed dietary analysis of generalist predators. In this study, we used MiSeq next-generation sequencing (NGS) technology and universal arthropod primers to investigate the diet of several generalist insect predators collected in commercial organic Florida strawberry fields from November 2017 to March 2018. Of 12 preda

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Anyanwu, Madubuike Umunna, Ishmael Festus Jaja, and Obichukwu Chisom Nwobi. "Occurrence and Characteristics of Mobile Colistin Resistance (mcr) Gene-Containing Isolates from the Environment: A Review." International Journal of Environmental Research and Public Health 17, no. 3 (2020): 1028. http://dx.doi.org/10.3390/ijerph17031028.

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The emergence and spread of mobile colistin (COL) resistance (mcr) genes jeopardize the efficacy of COL, a last resort antibiotic for treating deadly infections. COL has been used in livestock for decades globally. Bacteria have mobilized mcr genes (mcr-1 to mcr-9). Mcr-gene-containing bacteria (MGCB) have disseminated by horizontal/lateral transfer into diverse ecosystems, including aquatic, soil, botanical, wildlife, animal environment, and public places. The mcr-1, mcr-2, mcr-3, mcr-5, mcr-7, and mcr-8 have been detected in isolates from and/or directly in environmental samples. These genes

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Yee, S. P., D. Mock, P. Greer, et al. "Lymphoid and mesenchymal tumors in transgenic mice expressing the v-fps protein-tyrosine kinase." Molecular and Cellular Biology 9, no. 12 (1989): 5491–99. http://dx.doi.org/10.1128/mcb.9.12.5491.

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src, abl, and fps/fes are prototypes for a family of genes encoding nonreceptor protein-tyrosine kinases. The oncogenic potential of the v-fps protein-tyrosine kinase was investigated by introduction of the gag-fps coding sequence of Fujinami sarcoma virus into the mouse germ line. Transgenic mice with v-fps under the transcriptional control of a 5' human beta-globin promoter (GF) or with both 5' and 3' beta-globin regulatory sequences (GEF) were viable. Unexpectedly, both GF and GEF transgenes were expressed in a wide variety of tissues and induced a spectrum of benign and malignant tumors. T

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Tomlinson, Kiran, Johan Ugander, and Jon Kleinberg. "Ballot Length in Instant Runoff Voting." Proceedings of the AAAI Conference on Artificial Intelligence 37, no. 5 (2023): 5841–49. http://dx.doi.org/10.1609/aaai.v37i5.25724.

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Instant runoff voting (IRV) is an increasingly-popular alternative to traditional plurality voting in which voters submit rankings over the candidates rather than single votes. In practice, elections using IRV often restrict the ballot length, the number of candidates a voter is allowed to rank on their ballot. We theoretically and empirically analyze how ballot length can influence the outcome of an election, given fixed voter preferences. We show that there exist preference profiles over k candidates such that up to k-1 different candidates win at different ballot lengths. We derive exact lo

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Fujiwara, Hiroshi, Frank El Ouriaghli, Matthias Grube, et al. "Identification and in vitro expansion of CD4+ and CD8+ T cells specific for human neutrophil elastase." Blood 103, no. 8 (2004): 3076–83. http://dx.doi.org/10.1182/blood-2003-07-2424.

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Abstract Human neutrophil elastase (HNE) and proteinase 3 (PRO3) are myeloid tissue-restricted serine proteases, aberrantly expressed by myeloid leukemia cells. PRO3 and HNE share the PR1 peptide sequence that induces HLA-A*0201–restricted cytotoxic T cells (CTLs) with antileukemia reactivity. We studied the entire HNE protein for its ability to induce CTLs. In an 18-hour culture, HNE-loaded monocytes stimulated significant intracellular interferon γ (IFN-γ) production by CD4+ and CD8+ T cells in 12 of 20 and 8 of 20 healthy individuals, respectively. Lymphocytes from 2 HNE responders were pul

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Kanyesigye, Dalton, Vincent Pius Alibu, Wee Tek Tay, et al. "Population Genetic Structure of the Bean Leaf Beetle Ootheca mutabilis (Coleoptera: Chrysomelidae) in Uganda." Insects 13, no. 6 (2022): 543. http://dx.doi.org/10.3390/insects13060543.

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Bean leaf beetle (BLB) (Ootheca mutabilis) has emerged as an important bean pest in Uganda, leading to devastating crop losses. There is limited information on the population genetic structure of BLB despite its importance. In this study, novel microsatellite DNA markers and the partial mitochondrial cytochrome oxidase subunit I (mtCOI) gene sequences were used to analyze the spatial population genetic structure, genetic differentiation and haplotype diversity of 86 O. mutabilis samples from 16 (districts) populations. We identified 19,356 simple sequence repeats (SSRs) (mono, di-, tri-, tetra

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Nguyen, Amanda, Sophie Maisnier-Patin, Itsugo Yamayoshi, Eric Kofoid, and John R. Roth. "Selective Inbreeding: Genetic Crosses Drive Apparent Adaptive Mutation in the Cairns-Foster System of Escherichia coli." Genetics 214, no. 2 (2019): 333–54. http://dx.doi.org/10.1534/genetics.119.302754.

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The Escherichia coli system of Cairns and Foster employs a lac frameshift mutation that reverts rarely (10−9/cell/division) during unrestricted growth. However, when 108 cells are plated on lactose medium, the nongrowing lawn produces ∼50 Lac+ revertant colonies that accumulate linearly with time over 5 days. Revertants carry very few associated mutations. This behavior has been attributed to an evolved mechanism (“adaptive mutation” or “stress-induced mutagenesis”) that responds to starvation by preferentially creating mutations that improve growth. We describe an alternative model, “selectiv

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Giorda, R., E. P. Weisberg, T. K. Ip, and M. Trucco. "Genomic structure and strain-specific expression of the natural killer cell receptor NKR-P1." Journal of Immunology 149, no. 6 (1992): 1957–63. http://dx.doi.org/10.4049/jimmunol.149.6.1957.

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Abstract NK cells are able to lyse a variety of virally infected and neoplastic cells in an MHC-unrestricted manner. The cell-surface protein NKR-P1 is thought to play a key role in this process. NKR-P1, initially identified in rat IL-2 activated NK cells, is encoded in the mouse by at least three similar, but not identical, genes. We previously reported the isolation and characterization of three different NKR-P1 cDNA, termed cDNA 2, 34, and 40, from IL-2 activated mouse NK cells. This report describes the structure of the gene encoding NKR-P1 cDNA 2, the smallest of these three cDNA. Gene 2

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Kanagasabai, Lenin. "EXTREME LEARNING MACHINE AND CHAOTIC BASED SPHYRAENA CHRYSOTAENIA OPTIMIZATION ALGORITHMS FOR LOSS LESSENING AND POWER STABILITY MAGNIFICATION." Suranaree Journal of Science and Technology 30, no. 3 (2023): 010228(1–14). http://dx.doi.org/10.55766/sujst-2023-03-e0123.

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In this paper Extreme Learning Machine and Chaotic based Sphyraena Chrysotaenia Optimization Algorithms are applied for solving the Real Power loss lessening problem. Key objective of this work are Real power loss decreasing, power divergence restraining, and power constancy amplification. Extreme Learning machine and chaotic are integrated in the algorithm to obtain the better solutions. Candidate solutions in the projected Sphyraena Chrysotaenia optimization are Sphyraena Chrysotaenia and population in the inspection region is quixotically enthused. Spasmodically impressive solutions can be

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Crochemore, Maxime, Gad M. Landau, and Michal Ziv-Ukelson. "A Subquadratic Sequence Alignment Algorithm for Unrestricted Scoring Matrices." SIAM Journal on Computing 32, no. 6 (2003): 1654–73. http://dx.doi.org/10.1137/s0097539702402007.

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Mann, D. W., I. Stroynowski, L. Hood, and J. Forman. "Cytotoxic T lymphocytes from mice with soluble class I Q10 molecules in their serum are not tolerant to membrane-bound Q10." Journal of Immunology 138, no. 1 (1987): 240–45. http://dx.doi.org/10.4049/jimmunol.138.1.240.

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Abstract Q10 is a class I Qa-2 region-encoded molecule that is secreted by the liver and present in serum at high concentrations (about 10 to 60 micrograms/ml) in most strains of mice. The amino terminal portion of this molecule can also be expressed as an integral membrane protein by splicing the 5' end of the Q10 gene to the 3' end of H-2Ld and transfecting the hybrid gene into murine L cells. Because CTL primarily recognize polymorphic determinants controlled by the alpha 1 and alpha 2 domains of class I molecules and because the Q10d/Ld product expressed by transfected L cells includes the

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Kurniawan, Komang Wahyu, Sri Andreani Utomo, and Joni Wahyuhadi. "Diffusion Weighted Imaging (DWI) Classification and Apparent Diffusion Coefficient (ADC) Value Tendency Based on Cerebral Glioma Grading in Patients at Dr. Soetomo General Academic Hospital in 2016-2020." AKSONA 3, no. 1 (2023): 7–12. http://dx.doi.org/10.20473/aksona.v3i1.41949.

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Highlight: Many studies conclude that the prognosis of gliomas can be determined using the DWI sequence and ADC value on MRI The correlation between DWI and ADC values with glioma grading is related to tumor cellularity, nuclear-cytoplasmic ratio, and extracellular space, which affect the movement of water molecules. ABSTRACT Introduction: Glioma grading is crucial to know its prognosis. Magnetic resonance imaging (MRI) is used as a preoperative examination that contains diffusion-weighted imaging (DWI) sequences confirmed by an apparent diffusion coefficient (ADC) value that helps assess tiss

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Chentsov, Alexander G. "ATTRACTION SETS IN ATTAINABILITY PROBLEMS WITH ASYMPTOTIC-TYPE CONSTRAINTS." Ural Mathematical Journal 11, no. 1 (2025): 25–45. https://doi.org/10.15826/umj.2025.1.002.

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In control theory, the problem of constructing and investigating attainability domains is very important. However, under perturbations of constraints, this problem lacks stability. It is useful to single out the case when the constraints are relaxed. In this case, greater opportunities arise in terms of attainability, and often a useful effect can be observed even under slight relaxation of the constraints. This situation is analogous to the duality gap in convex programming. Very often, it is not possible to specify in advance how much relaxation of the constraints will occur. Therefore, atte

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Adhikari, Shiva P., Saswata Karmakar, and Patrick J. Hrdlicka. "Nicked Invader probes: multistranded and sequence-unrestricted recognition of double-stranded DNA." Organic & Biomolecular Chemistry 20, no. 5 (2022): 1019–30. http://dx.doi.org/10.1039/d1ob02019f.

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Nicked Invaders, featuring three labile double-stranded segments, allow for recognition of long dsDNA targets (∼25 bps) under non-denaturing conditions, including chromosomal targets found to be refractory to recognition by conventional Invader probes.

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Anyanwu, Madubuike Umunna, Ishmael Festus Jaja, Charles Odilichukwu R. Okpala, et al. "Potential sources and characteristic occurrence of mobile colistin resistance (mcr) gene-harbouring bacteria recovered from the poultry sector: a literature synthesis specific to high-income countries." PeerJ 9 (October 5, 2021): e11606. http://dx.doi.org/10.7717/peerj.11606.

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Understanding the sources, prevalence, phenotypic and genotypic characteristics of mcr gene-harbouring bacteria (MGHB) in the poultry sector is crucial to supplement existing information. Through this, the plasmid-mediated colistin resistance (PMCR) could be tackled to improve food safety and reduce public health risks. Therefore, we conducted a literature synthesis of potential sources and characteristic occurrence of MGHB recovered from the poultry sector specific to the high-income countries (HICs). Colistin (COL) is a last-resort antibiotic used for treating deadly infections. For more tha

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