Relevant bibliographies by topics / Watson-Crick

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Academic literature on the topic 'Watson-Crick'

Author: Grafiati
Published: 4 June 2021
Last updated: 20 February 2023

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Journal articles on the topic "Watson-Crick"

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Fong, Wan Heng, Aqilahfarhana Abdul Rahman, Nor Haniza Sarmin, and Sherzod Turaev. "Static Watson-Crick Context-Free Grammars." International Journal of Online and Biomedical Engineering (iJOE) 15, no. 10 (June 27, 2019): 65. http://dx.doi.org/10.3991/ijoe.v15i10.10878.

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Sticker systems and Watson-Crick automata are two modellings of DNA molecules in DNA computing. A sticker system is a computational model which is coded with single and double-stranded DNA molecules; while Watson-Crick automata is the automata counterpart of sticker system which represents the biological properties of DNA. Both of these models use the feature of Watson-Crick complementarity in DNA computing. Previously, the grammar counterpart of the Watson-Crick automata have been introduced, known as Watson-Crick grammars which are classified into three classes: Watson-Crick regular grammars
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Abdul Rahman, Aqilahfarhana, Wan Heng Fong, Nor Haniza Sarmin, Sherzod Turaev, and Nurul Liyana Mohamad Zulkufli. "Static Watson-Crick regular grammar." Malaysian Journal of Fundamental and Applied Sciences 14 (October 25, 2018): 457–62. http://dx.doi.org/10.11113/mjfas.v14n0.1282.

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DNA computing, or more generally, molecular computing, is a recent development at the interface of computer science and molecular biology. In DNA computing, many computational models have been proposed in the framework of formal language theory and automata such as Watson-Crick grammars and sticker systems. A Watson-Crick grammar is a grammar model that generates double stranded strings, whereas a sticker system is a DNA computing model of the ligation and annealing operations over DNA strands using the Watson-Crick complementarity to form a complete double stranded DNA sequence. Most of the p
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Fong, Wan Heng, Aqilahfarhana Abdul Rahman, Nor Haniza Sarmin, and Sherzod Turaev. "Computational Power of Static Watson-Crick Context-free Grammars." Science Proceedings Series 1, no. 2 (April 24, 2019): 82–85. http://dx.doi.org/10.31580/sps.v1i2.679.

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Sticker system is a computer model which is coded with single and double-stranded molecules of DNA; meanwhile, Watson-Crick automata is the automata counterpart of the sticker system representing the biological properties of DNA. Both are the modelings of DNA molecules in DNA computing which use the feature of Watson-Crick complementarity. Formerly, Watson-Crick grammars which are classified into three classes have been introduced [1]. In this research, a grammar counterpart of sticker systems that uses the rule as in context-free grammar is introduced, known as a static Watson-Crick context-f
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Rangadurai, Atul, Eric S. Szymanski, Isaac Kimsey, Honglue Shi та Hashim M. Al-Hashimi. "Probing conformational transitions towards mutagenic Watson–Crick-like G·T mismatches using off-resonance sugar carbon R1ρ relaxation dispersion". Journal of Biomolecular NMR 74, № 8-9 (12 серпня 2020): 457–71. http://dx.doi.org/10.1007/s10858-020-00337-7.

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Abstract NMR off-resonance R1ρ relaxation dispersion measurements on base carbon and nitrogen nuclei have revealed that wobble G·T/U mismatches in DNA and RNA duplexes exist in dynamic equilibrium with short-lived, low-abundance, and mutagenic Watson–Crick-like conformations. As Watson–Crick-like G·T mismatches have base pairing geometries similar to Watson–Crick base pairs, we hypothesized that they would mimic Watson–Crick base pairs with respect to the sugar-backbone conformation as well. Using off-resonance R1ρ measurements targeting the sugar C3′ and C4′ nuclei, a structure survey, and mo
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KARI, LILA, and KALPANA MAHALINGAM. "WATSON-CRICK BORDERED WORDS AND THEIR SYNTACTIC MONOID." International Journal of Foundations of Computer Science 19, no. 05 (October 2008): 1163–79. http://dx.doi.org/10.1142/s0129054108006200.

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DNA strands that, mathematically speaking, are finite strings over the alphabet {A, G, C, T} are used in DNA computing to encode information. Due to the fact that A is Watson-Crick complementary to T and G to C, DNA single strands that are Watson-Crick complementary can bind to each other or to themselves in either intended or unintended ways. One of the structures that is usually undesirable for biocomputation, since it makes the affected DNA string unavailable for future interactions, is the hairpin: If some subsequences of a DNA single string are complementary to each other, the string will
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Jemima, Samuel Mary, and Rajkumar Dare. "Watson-Crick Local Languages and Watson-Crick Two Dimensional Local Languages." International Journal of Mathematics and Soft Computing 5, no. 2 (July 10, 2015): 165. http://dx.doi.org/10.26708/ijmsc.2015.2.5.19.

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Mahalingam, Kalpana, Ujjwal Kumar Mishra, and Rama Raghavan. "Watson–Crick Jumping Finite Automata." International Journal of Foundations of Computer Science 31, no. 07 (November 2020): 891–913. http://dx.doi.org/10.1142/s0129054120500331.

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Watson–Crick jumping finite automata work on tapes which are double stranded sequences of symbols similar to that of Watson–Crick automata. The double stranded sequence is scanned in a discontinuous manner. That is, after reading a double stranded string, the automata can jump over some subsequence and continue scanning depending on the rule. Some variants of such automata are 1-limited, No state, All final and Simple Watson–Crick jumping finite automata. The comparison of the languages accepted by these variants with the language classes in Chomsky hierarchy has been carried out. We investiga
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Xu, Yu, Akanksha Manghrani, Bei Liu, Honglue Shi, Uyen Pham, Amy Liu, and Hashim M. Al-Hashimi. "Hoogsteen base pairs increase the susceptibility of double-stranded DNA to cytotoxic damage." Journal of Biological Chemistry 295, no. 47 (September 10, 2020): 15933–47. http://dx.doi.org/10.1074/jbc.ra120.014530.

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As the Watson–Crick faces of nucleobases are protected in dsDNA, it is commonly assumed that deleterious alkylation damage to the Watson–Crick faces of nucleobases predominantly occurs when DNA becomes single-stranded during replication and transcription. However, damage to the Watson–Crick faces of nucleobases has been reported in dsDNA in vitro through mechanisms that are not understood. In addition, the extent of protection from methylation damage conferred by dsDNA relative to ssDNA has not been quantified. Watson–Crick base pairs in dsDNA exist in dynamic equilibrium with Hoogsteen base p
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Chatterjee, Kingshuk, and Kumar Sankar Ray. "Reversible Watson–Crick automata." Acta Informatica 54, no. 5 (April 19, 2016): 487–99. http://dx.doi.org/10.1007/s00236-016-0267-0.

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Chatterjee, Kingshuk, and Kumar Sankar Ray. "Unary Watson-Crick automata." Theoretical Computer Science 782 (August 2019): 107–12. http://dx.doi.org/10.1016/j.tcs.2019.03.009.

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Dissertations / Theses on the topic "Watson-Crick"

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Pan, Baocheng. "X-ray crystallographic studies on oligonucleotide structures containing non-watson-crick base pairs /." The Ohio State University, 1998. http://rave.ohiolink.edu/etdc/view?acc_num=osu1487951907958194.

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Silvester, Nicole Cherie. "Terminal Modifications of PNA and Their Use in Diagnostic and Antisense Technologies." Thesis, Griffith University, 2008. http://hdl.handle.net/10072/366991.

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Peptide nucleic acids (PNA) are analogues of DNA that bind to DNA and RNA via Watson-Crick base-pairing rules. Due to the lack of a negatively-charged backbone, hybridisation of PNA to DNA or RNA occurs without electrostatic repulsion thus binding is typically stronger and more rapid than when traditional DNA probes are used. This is reflected in the increased melting temperature (Tm) of the conjugates. These properties, as well as the chemical and biological stability of PNA, make these molecules attractive for use in diagnostic and therapeutic applications. Amino acids are routinely conjugat
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Ke, Song-Hua. "Determination of non-watson-crick base pair stability and development of a new method for mutation detection." Diss., Georgia Institute of Technology, 1994. http://hdl.handle.net/1853/25198.

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Mahalingam, Kalpana. "Involution codes with application to DNA strand design." [Tampa, Fla.] : University of South Florida, 2004. http://purl.fcla.edu/fcla/etd/SFE0000409.

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Khisamutdinov, Emil. "Part I Nucleic Acid Site-Selective Binding Studies of Isomers of Dihydrodioxin-Masked Ortho-Quinones as Potential Antitumor Drugs Part II The Role of Non-Watson-Crick Base Pairs in Stabilizing Recurrent RNA Motif." Bowling Green State University / OhioLINK, 2012. http://rave.ohiolink.edu/etdc/view?acc_num=bgsu1339432575.

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Abu, Almakarem Amal S. "Base Triples in RNA 3D Structures: Identifying, Clustering and Classifying." Bowling Green State University / OhioLINK, 2011. http://rave.ohiolink.edu/etdc/view?acc_num=bgsu1308783522.

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Chin, Ko-Hsin, and 秦可欣. "Deformed Watson-Crick Base Pair." Thesis, 2002. http://ndltd.ncl.edu.tw/handle/29108891764741487083.

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博士<br>國立中興大學<br>生物化學研究所<br>90<br>In 1953, James Watson and Francis Crick deduced the double helical structure of DNA and immediately inferred its mechanism of replication. This brilliant accomplishment is ranked as one of the most significant stepping stone in the history of biology because it leads to the understanding of gene function at molecular level. Thus, it has been well known that Watson-Crick base pairing is very stable. However, we have found that it is not always the case; Watson-Crick pairing can sometimes form alternate conformations, i.e. the canonical Watson-Crick G/C or A/T hy
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Sears, David. "The Computational Power of Extended Watson-Crick L Systems." Thesis, 2010. http://hdl.handle.net/1974/6224.

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Lindenmayer (L) systems form a class of interesting computational formalisms due to their parallel nature, the various circumstances under which they operate, the restrictions imposed on language acceptance, and other attributes. These systems have been extensively studied in the Formal Languages literature. In the past decade a new type of Lindenmayer system had been proposed: Watson-Crick Lindenmayer Systems. These systems are essentially a marriage between Developmental systems and DNA Computing. At their heart they are Lindenmayer systems augmented with a complementary relation amongst
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Kimsey, Isaac Joseph. "Visualizing Rare Watson-Crick-Like Tautomeric and Anionic Mismatches in DNA and RNA." Diss., 2016. http://hdl.handle.net/10161/12885.

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<p>The central dogma of molecular biology relies on the correct Watson-Crick (WC) geometry of canonical deoxyribonucleic acid (DNA) dG•dC and dA•dT base pairs to replicate and transcribe genetic information with speed and an astonishing level of fidelity. In addition, the Watson-Crick geometry of canonical ribonucleic acid (RNA) rG•rC and rA•rU base pairs is highly conserved to ensure that proteins are translated with high fidelity. However, numerous other potential nucleobase tautomeric and ionic configurations are possible that can give rise to entirely new pairing modes between the nucleoti
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Liou, Shih-Jhang, and 劉仕章. "Biosensor development based on non-Watson-Crick base pairings combing with signal amplification strategy." Thesis, 2018. http://ndltd.ncl.edu.tw/handle/kdw7x3.

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Books on the topic "Watson-Crick"

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Crick, Watson & DNA. London: Arrow, 1997.

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Crick, Watson, and DNA. New York: Anchor Books, 1999.

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Anniss, Matt. James Watson and Francis Crick. New York, NY: Gareth Stevens Publishing, 2015.

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Sherrow, Victoria. James Watson & Francis Crick: Decoding the secrets of DNA. Woodbridge, Conn: Blackbirch Press Book, 1995.

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Sherrow, Victoria. James Watson & Francis Crick: Decoding the secrets of DNA. Woodbridge, Conn: Blackbirch Press Book, 1995.

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Gallardo-Cabello, Manuel. Atrapados en la doble hélice: James Watson y Francis Crick. México: Consejo Nacional para la Cultura y las Artes, 1991.

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Gallardo-Cabello, Manuel. Atrapados en la doble hélice: James Watson y Francis Crick. México: Consejo Nacional para la Cultura y las Artes, 1991.

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Gallardo-Cabello, Manuel. Atrapados en la doble he lice: James Watson, Francis Crick. Me xico, D.F: Editorial Pax Me xico, 2007.

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Francis Crick and James Watson and the building blocks of life. New York: Oxford University Press, 2000.

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Newton, David E. James Watson & Francis Crick: Discovery of the double Helix and behond. New York: Facts on File, 1992.

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Book chapters on the topic "Watson-Crick"

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Cleaves, Henderson James. "Watson–Crick Pairing." In Encyclopedia of Astrobiology, 1775–76. Berlin, Heidelberg: Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-11274-4_1683.

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Cleaves, Henderson James. "Watson-Crick Pairing." In Encyclopedia of Astrobiology, 2650. Berlin, Heidelberg: Springer Berlin Heidelberg, 2015. http://dx.doi.org/10.1007/978-3-662-44185-5_1683.

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Păun, Gheorghe, Grzegorz Rozenberg, and Arto Salomaa. "Watson—Crick Automata." In DNA Computing, 151–86. Berlin, Heidelberg: Springer Berlin Heidelberg, 1998. http://dx.doi.org/10.1007/978-3-662-03563-4_6.

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Cleaves, Henderson James. "Watson-Crick Pairing." In Encyclopedia of Astrobiology, 1. Berlin, Heidelberg: Springer Berlin Heidelberg, 2014. http://dx.doi.org/10.1007/978-3-642-27833-4_1683-4.

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Cleaves, Henderson James. "Watson-Crick Pairing." In Encyclopedia of Astrobiology, 1. Berlin, Heidelberg: Springer Berlin Heidelberg, 2022. http://dx.doi.org/10.1007/978-3-642-27833-4_1683-5.

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Kulkarni, Manasi S., Kalpana Mahalingam, and Ananda Chandra Nayak. "Watson-Crick Partial Words." In Theory and Practice of Natural Computing, 190–202. Cham: Springer International Publishing, 2017. http://dx.doi.org/10.1007/978-3-319-71069-3_15.

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Freund, R., Gh Păun, G. Rozenberg, and A. Salomaa. "Watson-Crick finite automata." In DNA Based Computers III, 297–327. Providence, Rhode Island: American Mathematical Society, 1999. http://dx.doi.org/10.1090/dimacs/048/22.

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Mohamad Zulkufli, N. L., S. Turaev, M. I. Mohd Tamrin, and A. Messikh. "Watson-Crick Linear Grammars." In Proceedings of the International Conference on Data Engineering 2015 (DaEng-2015), 403–12. Singapore: Springer Singapore, 2019. http://dx.doi.org/10.1007/978-981-13-1799-6_42.

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Kutrib, Martin, and Andreas Malcher. "Two-Party Watson-Crick Computations." In Implementation and Application of Automata, 191–200. Berlin, Heidelberg: Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-18098-9_21.

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Mahalingam, Kalpana, Rama Raghavan, and Ujjwal Kumar Mishra. "Watson-Crick Jumping Finite Automata." In Lecture Notes in Computer Science, 467–80. Cham: Springer International Publishing, 2019. http://dx.doi.org/10.1007/978-3-030-14812-6_29.

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Conference papers on the topic "Watson-Crick"

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Samuel, Mary Jemima, and V. R. Daret. "Watson-Crick online tessellation automaton and timed Watson-Crick ω-automaton." In 2010 IEEE Fifth International Conference on Bio-Inspired Computing: Theories and Applications (BIC-TA). IEEE, 2010. http://dx.doi.org/10.1109/bicta.2010.5645070.

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Tamrin, Mohd Izzuddin Mohd, Sherzod Turaev, and Tengku Mohd Tengku Sembok. "Weighted Watson-Crick automata." In PROCEEDINGS OF THE 21ST NATIONAL SYMPOSIUM ON MATHEMATICAL SCIENCES (SKSM21): Germination of Mathematical Sciences Education and Research towards Global Sustainability. AIP Publishing LLC, 2014. http://dx.doi.org/10.1063/1.4887606.

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Subramanian, K. G., S. Hemalatha, and Ibrahim Venkat. "On Watson-Crick automata." In the Second International Conference. New York, New York, USA: ACM Press, 2012. http://dx.doi.org/10.1145/2393216.2393242.

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Carell, T. "DNA bases beyond Watson and Crick." In XVIth Symposium on Chemistry of Nucleic Acid Components. Prague: Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 2014. http://dx.doi.org/10.1135/css201414175.

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Csuhaj-Varjú, Erzsébet, and Arto Salomaa. "Networks of Watson-Crick D0L systems." In Proceedings of the International Colloquium. WORLD SCIENTIFIC, 2003. http://dx.doi.org/10.1142/9789812704979_0009.

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Zulkufli, Nurul Liyana binti Mohamad, Sherzod Turaev, Mohd Izzuddin Mohd Tamrin, and Messikh Azeddine. "Closure properties of Watson-Crick grammars." In INNOVATION AND ANALYTICS CONFERENCE AND EXHIBITION (IACE 2015): Proceedings of the 2nd Innovation and Analytics Conference & Exhibition. AIP Publishing LLC, 2015. http://dx.doi.org/10.1063/1.4937082.

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Jan, Nurhidaya Mohamad, Fong Wan Heng, Nor Haniza Sarmin, and Sherzod Turaev. "Closure properties of Watson-Crick Petri net." In PROCEEDING OF THE 25TH NATIONAL SYMPOSIUM ON MATHEMATICAL SCIENCES (SKSM25): Mathematical Sciences as the Core of Intellectual Excellence. Author(s), 2018. http://dx.doi.org/10.1063/1.5041659.

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Binti Mohamad Zulkufli, Nurul Liyana, Sherzod Turaev, Mohd Izzuddin Mohd Tamrin, Azeddine Messikh, and Imad Fakhri Taha Alshaikhli. "Computational Properties of Watson-Crick Context-Free Grammars." In 2015 4th International Conference on Advanced Computer Science Applications and Technologies (ACSAT). IEEE, 2015. http://dx.doi.org/10.1109/acsat.2015.19.

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Cojocaru, Liliana. "Watson-Crick automata and PCFAS with two components." In the first conference on computing frontiers. New York, New York, USA: ACM Press, 2004. http://dx.doi.org/10.1145/977091.977113.

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Rothemund, Paul W. K. "Beyond Watson and Crick: Programming DNA self-assembly for nanofabrication." In 2012 7th IEEE International Conference on Nano/Micro Engineered and Molecular Systems (NEMS). IEEE, 2012. http://dx.doi.org/10.1109/nems.2012.6196703.

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