Academic literature on the topic 'Western barred bandicoot'

Population structure, reproduction, condition, movements and habitat preference were assessed for western barred bandicoots (Perameles bougainville) on Dorre and Bernier Islands over seven trapping sessions between 1988 and 1995. Data comes from 372 captures of bandicoots in 2535 trap-nights (an average of 14·7 captures per 100 trap-nights). Trap success was 5.7–25.8% on Dorre and 5.7–7.6% on Bernier. Recaptures within a trip made up 29% of bandicoot captures. The overall sex ratio (excluding recaptures) was skewed heavily towards males at 1.7: 1 for trapped animals, but varied between male and female dominance at any time according to reproductive status of females. Sex ratio of pouch young was 1.2: 1. Production of young was concentrated in the wetter winter months. The smallest western barred bandicoot with pouch young weighed 175 g. Bandicoots showed a pattern of increasing litter size with size of mother. Females with young had an average litter size of 1.8, with young reaching independence at about 100 g body weight. Large testes size relative to body size in males suggested a promiscuous mating system. Body condition could be predicted by sex (females were typically in better condition than males) and by rainfall over the previous 2 months. Some sexual dimorphism was evident, with females having longer heads and typically being heavier than males. There was no detected dimorphism between island populations. Movements of bandicoots appeared limited, with the median distance moved by animals captured more than once within a 9–11-day trapping session being 154 m. There was no significant difference in movements between the sexes, with males moving a median distance of 160 m and females 138 m within trapping sessions. The greatest movement by a male was 1020 m while the greatest distance moved by a female was 490 m. Only 13% of recorded movements were greater than 400 m. Home ranges overlapped, with 51% of traps catching more than one individual and as many as five males being caught at the same trap site. Bandicoots were widely dispersed through all habitats surveyed. Bandicoots appeared to suffer a substantial reduction in numbers on Dorre Island in a prolonged drought extending from October 1986 to April 1989, reducing overall trap success to less than 6% in the 1988 survey.

The western barred bandicoot (Perameles bougainville) is an endangered Australian marsupial species in which a papillomatosis and carcinomatosis syndrome occurs. Bandicoot papillomatosis carcinomatosis virus type 1 (BPCV1) is associated with the lesions of this progressively debilitating syndrome. Five digoxigenin-labelled DNA probes were generated for in situ hybridization (ISH) and the technique was optimized and performed on formalin-fixed paraffin-embedded (FFPE) biopsies. Staining of keratinocyte and sebocyte nuclei within lesions was achieved with all five probes. The sensitivity of ISH (76.9 %) surpassed that of PCR (30.8 %) for FFPE samples. The sensitivity of ISH varied from 81 % (papillomas) and 70 % (carcinoma in situ) to 29 % (squamous cell carcinomas). The specificity of the test was confirmed using an irrelevant probe and papillomas from other species. These results strengthen the association between BPCV1 and the western barred bandicoot papillomatosis and carcinomatosis syndrome and give insight into the biology of the virus–host interaction.

The metabolic, thermoregulatory and ventilatory physiology of western barred bandicoots (Perameles bougainville bougainville), measured in the laboratory during summer and winter at ambient temperatures of 10 and 30°C, is relatively unusual for a peramelid marsupial. It has a low thermoneutral body temperature (33.7 ± 0.2°C), a very high basal metabolic rate (0.68 ± 0.03 mL O2 g–1 h–1 at ambient temperature = 30°C), low respiratory exchange ratios (often less than 0.7) and a high thermal conductance, reflecting its high oxygen consumption rate and low body temperature. Ventilatory frequency and tidal volume were variable between seasons, although minute volume and oxygen extraction efficiency were not. Minute volume of the western barred bandicoot was higher than expected, reflecting its high metabolic rate. Time of year (i.e. season) had an effect on some aspects of metabolic, thermoregulatory and ventilatory physiology (carbon dioxide production, respiratory exchange ratio, total evaporative water loss), but this effect was not as substantial nor as general as the effect of ambient temperature.

ABSTRACT Conservation efforts to prevent the extinction of the endangered western barred bandicoot (Perameles bougainville) are currently hindered by a progressively debilitating cutaneous and mucocutaneous papillomatosis and carcinomatosis syndrome observed in captive and wild populations. In this study, we detected a novel virus, designated the bandicoot papillomatosis carcinomatosis virus type 1 (BPCV1), in lesional tissue from affected western barred bandicoots using multiply primed rolling-circle amplification and PCR with the cutaneotropic papillomavirus primer pairs FAP59/FAP64 and AR-L1F8/AR-L1R9. Sequencing of the BPCV1 genome revealed a novel prototype virus exhibiting genomic properties of both the Papillomaviridae and the Polyomaviridae. Papillomaviral properties included a large genome size (∼7.3 kb) and the presence of open reading frames (ORFs) encoding canonical L1 and L2 structural proteins. The genomic organization in which structural and nonstructural proteins were encoded on different strands of the double-stranded genome and the presence of ORFs encoding the nonstructural proteins large T and small t antigens were, on the other hand, typical polyomaviral features. BPCV1 may represent the first member of a novel virus family, descended from a common ancestor of the papillomaviruses and polyomaviruses recognized today. Alternatively, it may represent the product of ancient recombination between members of these two virus families. The discovery of this virus could have implications for the current taxonomic classification of Papillomaviridae and Polyomaviridae and can provide further insight into the evolution of these ancient virus families.

Context Reintroduction of endangered species potentially places them back in contact with putative factors of historical decline, inadvertently providing the opportunity to evaluate their impact. Aims To monitor the long-term progress of a population of western barred bandicoot reintroduced to mainland Australia and to assess factors involved in its eventual local extinction. Methods Bandicoots were reintroduced from offshore Dorre Island to the nearby mainland peninsula of Heirisson Prong in 1995. The narrow neck of the peninsula was fenced to exclude foxes and feral cats from a 1200 ha area, but the area was subject to periodic incursions. There was parallel management of a confined but unsupported population in an in situ 17-ha predator refuge. Bandicoots were assessed for abundance, body condition and reproduction two to four times annually between 1995 and 2010. In addition, perceived threatening processes (drought, disease and the abundance of cats, foxes and rabbits) were monitored. Key results Bandicoots became well established at the site, spreading to all available habitat. Numbers fluctuated strongly, peaking at ~250 in 1999 and then declining to apparent local extinction (with subsequent re-establishment from the refuge), and at ~470 animals in 2006, followed again by extinction. Conclusions Predation by feral cats was implicated as the primary cause of both free-range extinctions and the eventual elimination of all bandicoots from the predator refuge. Other contributing factors in one or more of the declines were a reduction in reproduction and recruitment in bandicoots during a one-in-100-year drought, the impact of overabundant European rabbits on vegetation used by bandicoots for nesting shelter and brief fox incursions at key times. Implications Existing methods of control of feral cats are rendered ineffective in the presence of abundant and diverse native fauna and abundant exotic species (particularly European rabbits). In addition, episodic drought in arid Australia intensifies the impact of predation by restricting reproduction of prey species. These factors hamper the attempts of conservation managers to re-establish vulnerable species at sites other than those with the infrastructure and/or management intensity to largely exclude exotic predators (and preferably European rabbits) over the long-term.

On mainland Australia, eastern barred bandicoots (Perameles gunnii) are now restricted to a single wild population at Hamilton in western Victoria, and recovery efforts are focussed on establishing new populations at reintroduction sites. The success in founding these populations has been variable, and post-release survival has not been accurately quantified. It is believed that predation by the red fox (Vulpes vulpes) is largely responsible for post-release loss of P. gunnii, despite the implementation of predator control programs at release sites. An intensive fox control program was established to protect 10 released P. gunnii at Woodlands Historic Park, near Melbourne. Monitoring of fox activity was undertaken prior to and after the release in an attempt to better understand the effectiveness of control operations. Seven bandicoots were known to be alive at the conclusion of the study five weeks after their release (and an additional animal was trapped four months later), with weight loss appearing to be an important factor in determining post-release survival. Despite constant levels of bait-take by V. vulpes, fox activity measured from sand-pads remained high. We hypothesise that the presence of suitable refugia is allowing the persistence of a low-density bandicoot population at Woodlands despite constant, high levels of fox activity.

Once widespread throughout Victoria, the Eastern Barred Bandicoot Perameles gunnii has declined to near extinction on the Australian mainland due to habitat loss and predation by exotic predators. The last remaining wild population occurs in Hamilton, western Victoria. Founders for a captive breeding program were taken from this population in 1988, which has persisted without predator control or supplementation from captive-bred animals. The species was reintroduced to eight sites from 1989: Woodlands Historic Park, Hamilton Community Parklands, Mooramong, Floating Islands Nature Reserve, Lake Goldsmith, Lanark, Cobra Killuc, and Mount Rothwell. Although all reintroduced populations initially increased, declines were observed during the mid- to late 1990s, from which they have never recovered. A combination of drought and predation by Red Foxes Vulpes vulpes and Cats Felis catus is thought to be responsible. Currently, management techniques focus on intensive control of Red Foxes by poison baiting and shooting, and by construction and maintenance of predator barrier-fences at some sites. Understanding which characteristics lead to the success or failure of a reintroduction site is paramount to the success of the recovery programme for this species. This paper reviews the status of all reintroduction sites, and examines characteristics that could account for the performance of their populations.

For more than a decade, community groups, scientific organizations and government agencies have collaborated to repopulate the endangered western barred bandicoot (Perameles bougainville). While initially successful, the unexpected discovery of a papillomatosis and carcinomatosis syndrome in captive and wild populations of P. bougainville exposed a dearth of knowledge regarding their diseases. This dissertation addresses this issue through study of the clinical pathology, immunology, parasitology, and virology of P. bougainville. To facilitate the detection and understanding of diseases in P. bougainville, guidelines for interpreting haematology and clinical chemistry results were developed, including calculated species-specific reference intervals for plasma aspartate transaminase activity (20–283 U/L), haemoglobin (122-165 g/L), haematocrit (0.36-0.49 L/L), total leukocytes (2.9-14.9 x10^9/L), monocytes (0-0.6 x10^9/L), eosinophils (0-0.9 x10^9/L) and total protein (47-63 g/L) estimated by refractometry. P. bougainville immunoglobulin was also fractionated from plasma and inoculated into sheep to derive antiserum for serological screening assays. Arthropods, helminths and protozoa parasitic on P. bougainville were catalogued and Eimeria kanyana n. sp. was formally described. The pathogenic and zoonotic potential of bacteria detected in ticks parasitic on P. bougainville was also considered. The association between bandicoot papillomatosis carcinomatosis virus type 1 (BPCV1) and the western barred bandicoot papillomatosis and carcinomatosis syndrome was investigated using PCR, in situ hybridization and virus isolation. Optimized in situ hybridization techniques demonstrated BPCV1 DNA within keratinocyte and sebocyte nuclei, and BPCV1 mRNA within the cytoplasm. BPCV1 virions were isolated by ultracentrifugation and visualized with negative stain transmission electron microscopy revealing icosahedral, non-enveloped viral capsids ~47 nm in diameter, comparable to viruses classified within Papillomaviridae and Polyomaviridae. A novel virus, tentatively named bandicoot papillomatosis carcinomatosis virus type 2 (BPCV2) was discovered in papillomatous lesions from a southern brown bandicoot (Isoodon obesulus). It had a circular double-stranded DNA genome of 7277 bp, and encoded two papillomavirus-like structural proteins, L1 and L2, and two polyomavirus-like putative transforming proteins, large T antigen and small t antigen. DNA and RNA in situ hybridization confirmed the presence of BPCV2 nucleic acids within lesion biopsies. The discovery of the bandicoot papillomatosis carcinomatosis viruses has provoked reassessment of the established virus taxonomy paradigm, theories of virus-host co-speciation and bandicoot population management strategies.

Conservation efforts to prevent the extinction of the endangered western barred bandicoot Perameles bougainville (WBB) are currently hindered by a debilitating progressive papillomatosis and carcinomatosis syndrome. Now extinct on mainland Australia, wild populations of the WBB are known only to exist on Bernier and Dorre Islands in Shark Bay, Western Australia. This thesis describes and analyses the pathological (gross, histological, ultrastructural) and immunohistochemical features of a papillomatosis and carcinomatosis syndrome in the WBB. The detection and characterisation of a novel virus, the bandicoot papillomatosis carcinomatosis virus type 1 (BPCV1), found in association with cutaneous and muco-cutaneous papillomas and carcinomas, is described. BPCV1 was found to exhibit genomic and morphological features of both the Papillomaviridae and the Polyomaviridae, and may represent the first member of a new family of viruses. The findings of this study provide evidence that BPCV1 is the causative agent of the papillomatosis and carcinomatosis syndrome. Clinical, pathological and molecular evidence of the syndrome and BPCV1 were found in the Bernier Island WBB population at Red Cliff and in captive populations comprising all or a proportion of founder WBBs from this site, but not at all in the WBB population on Dorre Island or Heirisson Prong. The papillomatosis and carcinomatosis syndrome in the western barred bandicoot is a pertinent example of a disease process hampering efforts to prevent the extinction of an endangered species.

Conservation efforts to prevent the extinction of the endangered western barred bandicoot Perameles bougainville (WBB) are currently hindered by a debilitating progressive papillomatosis and carcinomatosis syndrome. Now extinct on mainland Australia, wild populations of the WBB are known only to exist on Bernier and Dorre Islands in Shark Bay, Western Australia. This thesis describes and analyses the pathological (gross, histological, ultrastructural) and immunohistochemical features of a papillomatosis and carcinomatosis syndrome in the WBB. The detection and characterisation of a novel virus, the bandicoot papillomatosis carcinomatosis virus type 1 (BPCV1), found in association with cutaneous and muco-cutaneous papillomas and carcinomas, is described. BPCV1 was found to exhibit genomic and morphological features of both the Papillomaviridae and the Polyomaviridae, and may represent the first member of a new family of viruses. The findings of this study provide evidence that BPCV1 is the causative agent of the papillomatosis and carcinomatosis syndrome. Clinical, pathological and molecular evidence of the syndrome and BPCV1 were found in the Bernier Island WBB population at Red Cliff and in captive populations comprising all or a proportion of founder WBBs from this site, but not at all in the WBB population on Dorre Island or Heirisson Prong. The papillomatosis and carcinomatosis syndrome in the western barred bandicoot is a pertinent example of a disease process hampering efforts to prevent the extinction of an endangered species.

Conservation efforts to prevent the extinction of the endangered western barred bandicoot Perameles bougainville (WBB) are currently hindered by a debilitating progressive papillomatosis and carcinomatosis syndrome. Now extinct on mainland Australia, wild populations of the WBB are known only to exist on Bernier and Dorre Islands in Shark Bay, Western Australia. This thesis describes and analyses the pathological (gross, histological, ultrastructural) and immunohistochemical features of a papillomatosis and carcinomatosis syndrome in the WBB. The detection and characterisation of a novel virus, the bandicoot papillomatosis carcinomatosis virus type 1 (BPCV1), found in association with cutaneous and muco-cutaneous papillomas and carcinomas, is described. BPCV1 was found to exhibit genomic and morphological features of both the Papillomaviridae and the Polyomaviridae, and may represent the first member of a new family of viruses. The findings of this study provide evidence that BPCV1 is the causative agent of the papillomatosis and carcinomatosis syndrome. Clinical, pathological and molecular evidence of the syndrome and BPCV1 were found in the Bernier Island WBB population at Red Cliff and in captive populations comprising all or a proportion of founder WBBs from this site, but not at all in the WBB population on Dorre Island or Heirisson Prong. The papillomatosis and carcinomatosis syndrome in the western barred bandicoot is a pertinent example of a disease process hampering efforts to prevent the extinction of an endangered species.

Thesis (Ph. D.)--University of Sydney, 2005.
Title from title screen (viewed 19 May 2008). Submitted in fulfilment of the requirements for the degree of Doctor of Philosophy to the Faculty of Science. Degree awarded 2005; thesis submitted 2004. Includes bibliographical references. Also available in print form.

Almost half of the world's mammal extinctions in the last two hundred years have occurred in Australia (Short and Smith 1994). The western barred bandicoot Perameles bougainville is one of a suite of species that is currently threatened with extinction, surviving only on two islands in Shark Bay, Western Australia. Reintroduction has been used as a tool in conservation biology to assist in the recovery of threatened species, such as the western barred bandicoot. The aims of this project were to 1) successfully reintroduce and establish a free-ranging mainland population of the western barred bandicoot at Heirisson Prong, Shark Bay, 2) contribute information on the biology of the species, its interactions with introduced species, and its likelihood of persistence as a reintroduced population in the longer-term, and 3) to provide recommendations to assist future reintroductions of the species. The first reintroduction of the western barred bandicoot from surviving remnant island populations to the mainland, some 60 years after its apparent mainland extinction, was from Dorre Island to Heirisson Prong in 1995. Animals were translocated initially to a predator-free refuge on Heirisson Prong, and then subsequently released to the 12 km2 peninsula where introduced predators (foxes Vulpes vulpes and feral cats Felis catus) had been controlled, but European rabbits Oryctolagus cuniculus had not. Despite a small founder number and high mortality of free-range bandicoots in the presence of a low-density feral cat population, the bandicoot population successfully established. The reintroduced population of western barred bandicoots provided an opportunity to study the biology of the species, and to compare it with the remnant island populations and other species of Australian bandicoot. Many population parameters were similar between the island and mainland western barred bandicoot populations, as well as between the western barred bandicoot and other bandicoot species, suggesting that the habitat at the reintroduction site is suitable for long-term persistence of the population. However, there were some notable differences. The western barred bandicoot is the smallest extant species of bandicoot, with fewer young per litter than recorded for other bandicoot species, adult sex ratios were closer to parity, animals reached sexual maturity later, and it is the only species of bandicoot where females are larger than males. Home range size is larger also than recorded for other species. Some of these differences may be explained in part by trade-offs between island dwarfism, lactational pressures, and nest defence. The nesting biology of the western barred bandicoot was studied at Heirisson Prong, including during periods of high and low densities of rabbits. Individuals of the species constructed and utilised nests in a similar fashion to other species of Australian bandicoot, nesting amongst litter underneath shrubs. The western barred bandicoot appeared to favour particular shrub species, especially when vegetation condition was poor due to rabbit damage, but displayed flexibility in being able to construct nests under a variety of shrub species where at least some surface litter was present. Grasses were used in nest construction only when rabbit density was low. Nests appear important for protection against temperature extremes and diurnal predators. Vegetation exclosures around three of the shrub species most commonly used by the western barred bandicoot for nest sites (Acacia ligulata, A. tetragonophylla and Melaleuca cardiophylla) were used to examine the impact of rabbits on vegetation on Heirisson Prong. A high-density rabbit population over the summer of 1997/98 caused in a decrease in canopy cover and the death of mature A. ligulata. Subsequent rainfall and low-density rabbit populations allowed A. tetragonophylla shrubs to recover their former structure, and M. cardiophylla to recover, but not to the same degree. The flexibility of western barred bandicoots in use of nest materials and their omnivorous diet may enable the species to survive in the face of habitat modification by rabbits. Population viability analysis was used to examine future options for the recovery of the endangered western barred bandicoot. Biological data from the Dorre Island and Heirisson Prong populations were input to the computer simulation program VORTEX. The western barred bandicoot populations were modelled under a variety of scenarios to examine the possible effects of changes in carrying capacity, founder population size, inbreeding depression, and the occurrence of drought and cat predation as catastrophes, on the probability of population extinction. This analysis highlighted the need for eradication of feral cats, above all other management actions. Cat predation was particularly potent when it acted through high loss of juveniles, as well as adult bandicoots. Predator control is considered critical for the long-term persistence of reintroduced populations of the western barred bandicoot. This study documents the first reintroduction of the endangered western barred bandicoot to mainland Australia. The population had been extant for four years at the completion of data collection for this thesis, in late 1999 and for over eight years at the finalisation of this thesis in July 2004. The knowledge gained from the reintroduction was used to discuss management recommendations and future options for the recovery of the species. The primary concern for reintroductions of this, and other species of bandicoots, remains the control of introduced predators. For long-term persistence of small, isolated populations, such as those of the western barred bandicoot at Heirisson Prong and the Arid Recovery Project at Roxby Downs in South Australia, and the eastern barred bandicoot Perameles gunnii at a range of sites in Victoria, the complete eradication of introduced predators is essential.

Almost half of the world�s mammal extinctions in the last two hundred years have occurred in Australia (Short and Smith 1994). The western barred bandicoot Perameles bougainville is one of a suite of species that is currently threatened with extinction, surviving only on two islands in Shark Bay, Western Australia. Reintroduction has been used as a tool in conservation biology to assist in the recovery of threatened species, such as the western barred bandicoot. The aims of this project were to 1) successfully reintroduce and establish a free-ranging mainland population of the western barred bandicoot at Heirisson Prong, Shark Bay, 2) contribute information on the biology of the species, its interactions with introduced species, and its likelihood of persistence as a reintroduced population in the longer-term, and 3) to provide recommendations to assist future reintroductions of the species. The first reintroduction of the western barred bandicoot from surviving remnant island populations to the mainland, some 60 years after its apparent mainland extinction, was from Dorre Island to Heirisson Prong in 1995. Animals were translocated initially to a predator-free refuge on Heirisson Prong, and then subsequently released to the 12 km2 peninsula where introduced predators (foxes Vulpes vulpes and feral cats Felis catus) had been controlled, but European rabbits Oryctolagus cuniculus had not. Despite a small founder number and high mortality of free-range bandicoots in the presence of a low-density feral cat population, the bandicoot population successfully established. The reintroduced population of western barred bandicoots provided an opportunity to study the biology of the species, and to compare it with the remnant island populations and other species of Australian bandicoot. Many population parameters were similar between the island and mainland western barred bandicoot populations, as well as between the western barred bandicoot and other bandicoot species, suggesting that the habitat at the reintroduction site is suitable for long-term persistence of the population. However, there were some notable differences. The western barred bandicoot is the smallest extant species of bandicoot, with fewer young per litter than recorded for other bandicoot species, adult sex ratios were closer to parity, animals reached sexual maturity later, and it is the only species of bandicoot where females are larger than males. Home range size is larger also than recorded for other species. Some of these differences may be explained in part by trade-offs between island dwarfism, lactational pressures, and nest defence. The nesting biology of the western barred bandicoot was studied at Heirisson Prong, including during periods of high and low densities of rabbits. Individuals of the species constructed and utilised nests in a similar fashion to other species of Australian bandicoot, nesting amongst litter underneath shrubs. The western barred bandicoot appeared to favour particular shrub species, especially when vegetation condition was poor due to rabbit damage, but displayed flexibility in being able to construct nests under a variety of shrub species where at least some surface litter was present. Grasses were used in nest construction only when rabbit density was low. Nests appear important for protection against temperature extremes and diurnal predators. Vegetation exclosures around three of the shrub species most commonly used by the western barred bandicoot for nest sites (Acacia ligulata, A. tetragonophylla and Melaleuca cardiophylla) were used to examine the impact of rabbits on vegetation on Heirisson Prong. A high-density rabbit population over the summer of 1997/98 caused in a decrease in canopy cover and the death of mature A. ligulata. Subsequent rainfall and low-density rabbit populations allowed A. tetragonophylla shrubs to recover their former structure, and M. cardiophylla to recover, but not to the same degree. The flexibility of western barred bandicoots in use of nest materials and their omnivorous diet may enable the species to survive in the face of habitat modification by rabbits. Population viability analysis was used to examine future options for the recovery of the endangered western barred bandicoot. Biological data from the Dorre Island and Heirisson Prong populations were input to the computer simulation program VORTEX. The western barred bandicoot populations were modelled under a variety of scenarios to examine the possible effects of changes in carrying capacity, founder population size, inbreeding depression, and the occurrence of drought and cat predation as catastrophes, on the probability of population extinction. This analysis highlighted the need for eradication of feral cats, above all other management actions. Cat predation was particularly potent when it acted through high loss of juveniles, as well as adult bandicoots. Predator control is considered critical for the long-term persistence of reintroduced populations of the western barred bandicoot. This study documents the first reintroduction of the endangered western barred bandicoot to mainland Australia. The population had been extant for four years at the completion of data collection for this thesis, in late 1999 and for over eight years at the finalisation of this thesis in July 2004. The knowledge gained from the reintroduction was used to discuss management recommendations and future options for the recovery of the species. The primary concern for reintroductions of this, and other species of bandicoots, remains the control of introduced predators. For long-term persistence of small, isolated populations, such as those of the western barred bandicoot at Heirisson Prong and the Arid Recovery Project at Roxby Downs in South Australia, and the eastern barred bandicoot Perameles gunnii at a range of sites in Victoria, the complete eradication of introduced predators is essential.

An increasing number of endangered species have reached the threshold prompting management decisions to commence captive breeding and reintroduction. Such intervention is costly and requires a substantial investment of resources that might otherwise be spent on alternate conservation options. It is important, therefore, that such measures make use of all available information to ensure the success of the reintroduction effort, not just in the short-term but also well into the future. The diverse range of elements to be considered include habitat factors, number and sex ratio of founders, number of populations to establish, source populations to use, timing of releases and the need to supplement the populations. All of these factors can benefit through input from molecular genetic data to improve the quality of information used in decision making. Levels of genetic variation are strongly correlated with population fitness and their potential for long-term persistence. For this thesis I examined levels of genetic diversity at neutral and functional regions of the genome for two endangered species of Australian marsupials: the western barred bandicoot, Perameles bougainville; and Queensland populations of the greater bilby, Macrotis lagotis. These two species are under threat from similar processes: habitat destruction and modification for agriculture; predation by foxes and feral cats; changes to traditional fire regimes and competition with introduced pest species. Since European settlement, P. bougainville has become extinct on the mainland and now exists on just two islands in Shark Bay, Western Australia. Macrotis lagotis has suffered a range contraction of over 80% and the Queensland population has become disjointed from other populations to the west. Reintroduction efforts are under way for both species but, until now, the projects have not made use of molecular genetic data to inform their management decisions. I have used marker systems from nuclear microsatellite DNA, mitochondrial control region DNA and the functionally important major histocompatability complex (MHC) to assess levels of genetic diversity in natural, captive and reintroduced populations of both species. DNA was sourced from ear-tissue for P. bougainville and from ear-tissue and faecal pellets for M. lagotis. The levels of microsatellite diversity for the two natural populations of P. bougainville (Bernier Island: HE = 0.27± 0.1, A = 1.8± 0.3; Dorre Island: HE = 0.31± 0.1, A = 2.2± 0.4) were low compared to other marsupials and significantly lower than that recorded for the natural Queensland population of M. lagotis (Astrebla Downs: HE = 0.76 ± 0.03, A = 4.31 ± 0.3). In all cases, the diversity of captive and reintroduced populations was reduced relative to their source populations except for the Dryandra captive population of P. bougainville (HE = 0.54± 0.1, A = 2.69± 0.2) which was founded following a mixed breeding strategy using individuals sourced from both natural island populations. Distribution of mtDNA haplotypes among geographical regions indicated that, for each species, populations could be combined in captive breeding programs without compromising distinct evolutionary lineages. Design of MHC assays proved difficult for M. lagotis, but for P. bougainville two separate MHC class II alleles were identified. These two alleles were fixed across all individuals in all populations suggesting that they may represent two paralogous loci in P. bougainville and that MHC diversity is unusually low for this species. I have recommended that the recovery programs for both species be expanded to incorporate regular monitoring of molecular data to ensure that genetic diversity is retained and maximised in all populations. Where possible, the natural populations should be maintained as “pure lines” to increase overall species genetic diversity but the captive and reintroduced populations should make use of supplementary individuals from a mixture of sources to maximise variation and thus the adaptive potential of these populations in the novel environments to which they are being introduced.
Thesis (PhD Doctorate)
Doctor of Philosophy (PhD)
Griffith School of Environment
Faculty of Science, Environment, Engineering and Technology
Full Text

For more than a decade, community groups, scientific organizations and government agencies have collaborated to repopulate the endangered western barred bandicoot (Perameles bougainville). While initially successful, the unexpected discovery of a papillomatosis and carcinomatosis syndrome in captive and wild populations of P. bougainville exposed a dearth of knowledge regarding their diseases. This dissertation addresses this issue through study of the clinical pathology, immunology, parasitology, and virology of P. bougainville. To facilitate the detection and understanding of diseases in P. bougainville, guidelines for interpreting haematology and clinical chemistry results were developed, including calculated species-specific reference intervals for plasma aspartate transaminase activity (20-283 U/L), haemoglobin (122-165 g/L), haematocrit (0.36-0.49 L/L), total leukocytes (2.9-14.9 x10^9/L), monocytes (0-0.6 x10^9/L), eosinophils (0-0.9 x10^9/L) and total protein (47-63 g/L) estimated by refractometry. P. bougainville immunoglobulin was also fractionated from plasma and inoculated into sheep to derive antiserum for serological screening assays. Arthropods, helminths and protozoa parasitic on P. bougainville were catalogued and Eimeria kanyana n. sp. was formally described. The pathogenic and zoonotic potential of bacteria detected in ticks parasitic on P. bougainville was also considered. The association between bandicoot papillomatosis carcinomatosis virus type 1 (BPCV1) and the western barred bandicoot papillomatosis and carcinomatosis syndrome was investigated using PCR, in situ hybridization and virus isolation. Optimized in situ hybridization techniques demonstrated BPCV1 DNA within keratinocyte and sebocyte nuclei, and BPCV1 mRNA within the cytoplasm. BPCV1 virions were isolated by ultracentrifugation and visualized with negative stain transmission electron microscopy revealing icosahedral, non-enveloped viral capsids ~47 nm in diameter, comparable to viruses classified within Papillomaviridae and Polyomaviridae. A novel virus, tentatively named bandicoot papillomatosis carcinomatosis virus type 2 (BPCV2) was discovered in papillomatous lesions from a southern brown bandicoot (Isoodon obesulus). It had a circular double-stranded DNA genome of 7277 bp, and encoded two papillomavirus-like structural proteins, L1 and L2, and two polyomavirus-like putative transforming proteins, large T antigen and small t antigen. DNA and RNA in situ hybridization confirmed the presence of BPCV2 nucleic acids within lesion biopsies. The discovery of the bandicoot papillomatosis carcinomatosis viruses has provoked reassessment of the established virus taxonomy paradigm, theories of virus-host co-speciation and bandicoot population management strategies.