Relevant bibliographies by topics / Whole genome amplification

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Academic literature on the topic 'Whole genome amplification'

Author: Grafiati
Published: 4 June 2021
Last updated: 9 March 2023

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Journal articles on the topic "Whole genome amplification"

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Arneson, N., S. Hughes, R. Houlston, and S. Done. "GenomePlex Whole-Genome Amplification." Cold Spring Harbor Protocols 2008, no. 2 (January 1, 2008): pdb.prot4920. http://dx.doi.org/10.1101/pdb.prot4920.

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Li, Ying, Hyun-Jin Kim, Chunyang Zheng, Wing Huen A. Chow, Jeonghwa Lim, Brendan Keenan, Xiaojing Pan, Bertrand Lemieux, and Huimin Kong. "Primase-based whole genome amplification." Nucleic Acids Research 36, no. 13 (June 17, 2008): e79-e79. http://dx.doi.org/10.1093/nar/gkn377.

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Seong, Ji-Yeong, Young-Jun Ko, Hyeon-Koon Myeong, and Se-Wook Oh. "Development of a Rapid Foodborne-pathogen-detection Method Involving Whole-genome Amplification." Korean Journal of Food Science and Technology 48, no. 2 (April 30, 2016): 128–32. http://dx.doi.org/10.9721/kjfst.2016.48.2.128.

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Sun, Fengzhu, and Michael S. Waterman. "Whole Genome Amplification and Branching Processes." Advances in Applied Probability 29, no. 3 (September 1997): 629–68. http://dx.doi.org/10.2307/1428080.

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Whole genome amplification is important for multipoint mapping by sperm or oocyte typing and genetic disease diagnosis. Polymerase chain reaction is not suitable for amplifying long DNA sequences. This paper studies a new technique, designated PEP-primer-extension-preamplification, for amplifying long DNA sequences using the theory of branching processes. A mathematical model for PEP is constructed and a closed formula for the expected target yield is obtained. A central limit theorem and a strong law of large numbers for the number of kth generation target sequences are proved.
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Höckner, M., M. Erdel, A. Spreiz, G. Utermann, and D. Kotzot. "Whole Genome Amplification from Microdissected Chromosomes." Cytogenetic and Genome Research 125, no. 2 (2009): 98–102. http://dx.doi.org/10.1159/000227832.

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Hawkins, Trevor L., John C. Detter, and Paul M. Richardson. "Whole genome amplification — applications and advances." Current Opinion in Biotechnology 13, no. 1 (February 2002): 65–67. http://dx.doi.org/10.1016/s0958-1669(02)00286-0.

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Sun, Fengzhu, and Michael S. Waterman. "Whole Genome Amplification and Branching Processes." Advances in Applied Probability 29, no. 03 (September 1997): 629–68. http://dx.doi.org/10.1017/s0001867800028287.

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Whole genome amplification is important for multipoint mapping by sperm or oocyte typing and genetic disease diagnosis. Polymerase chain reaction is not suitable for amplifying long DNA sequences. This paper studies a new technique, designated PEP-primer-extension-preamplification, for amplifying long DNA sequences using the theory of branching processes. A mathematical model for PEP is constructed and a closed formula for the expected target yield is obtained. A central limit theorem and a strong law of large numbers for the number of kth generation target sequences are proved.
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Bassaganyas, Laia, George Freedman, Dedeepya Vaka, Eunice Wan, Richard Lao, Flavia Chen, Mark Kvale, Robert J. Currier, Jennifer M. Puck, and Pui-Yan Kwok. "Whole exome and whole genome sequencing with dried blood spot DNA without whole genome amplification." Human Mutation 39, no. 1 (November 6, 2017): 167–71. http://dx.doi.org/10.1002/humu.23356.

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Zheng, Ying-ming, Ning Wang, Lei Li, and Fan Jin. "Whole genome amplification in preimplantation genetic diagnosis." Journal of Zhejiang University SCIENCE B 12, no. 1 (January 2011): 1–11. http://dx.doi.org/10.1631/jzus.b1000196.

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Burtt, N. P. "Whole-Genome Amplification Using 29 DNA Polymerase." Cold Spring Harbor Protocols 2011, no. 1 (January 1, 2011): pdb.prot5552. http://dx.doi.org/10.1101/pdb.prot5552.

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Dissertations / Theses on the topic "Whole genome amplification"

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Glentis, S. "Whole genome amplification for PGD and PND : molecular and a-CGH diagnosis." Thesis, University College London (University of London), 2009. http://discovery.ucl.ac.uk/18554/.

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Whole genome amplification amplifies the entire genome in a few hours from samples of minimal DNA quantities, even from single cells. This may have many applications, especially in prenatal diagnosis, PGD and PGS. The hypothesis for chapter 3 was: Can multiple displacement amplification (MDA) be used as a universal step prior to molecular analysis for PGD? WGA using MDA (Qiagen) was used on single cells in order to overcome the problem of limited DNA in PGD. MDA allows the diagnosis through haplotyping or a combination of direct and indirect mutation analysis. Different cell types, including b
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Jiang, Sheng. "Application of nested PCR, whole genome amplification and comparative genomic hybridisation for single cell genetic analysis." Thesis, University of Glasgow, 2001. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.366140.

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Anscombe, C. J. "Multiple displacement amplification and whole genome sequencing for the diagnosis of infectious diseases." Thesis, Queen Mary, University of London, 2016. http://qmro.qmul.ac.uk/xmlui/handle/123456789/18409.

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Next-generation sequencing technologies are revolutionising our ability to characterise and investigate infectious diseases. Utilising the power of high throughput sequencing, this study reports, the development of a sensitive, non-PCR based, unbiased amplification method, which allows the rapid and accurate sequencing of multiple microbial pathogens directly from clinical samples. The method employs Φ29 DNA polymerase, a highly efficient enzyme able to produce strand displacement during the polymerisation process with high fidelity. Problems with DNA secondary structure were overcome and the
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Borgström, Erik. "Technologies for Single Cell Genome Analysis." Doctoral thesis, KTH, Genteknologi, 2016. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-181059.

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During the last decade high throughput DNA sequencing of single cells has evolved from an idea to one of the most high profile fields of research. Much of this development has been possible due to the dramatic reduction in costs for massively parallel sequencing. The four papers included in this thesis describe or evaluate technological advancements for high throughput DNA sequencing of single cells and single molecules. As the sequencing technologies improve, more samples are analyzed in parallel. In paper 1, an automated procedure for preparation of samples prior to massively parallel sequen
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Dillon, Candace. "Assessment of pre-PCR whole genome amplification of single pollen grains using flowering dogwood (Cornus florida)." VCU Scholars Compass, 2009. http://scholarscompass.vcu.edu/etd/1865.

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Studies of gene flow in natural plant populations often focus on either historical or abiotic dispersal methods (e.g. wind, water, gravity), but there is little information available on contemporary, animal-mediated pollen dispersal patterns. Emerging molecular laboratory techniques allow unprecedented insights into spatial patterns of pollen-mediated gene flow. However, to date, technical challenges have limited their widespread application. The genome of a pollen grain can be amplified via whole genome amplification (WGA) prior to traditional amplification via polymerase chain reaction (P
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Freedman, Benjamin Gordon. "Degenerate oligonucleotide primed amplification of genomic DNA for combinatorial screening libraries and strain enrichment." Diss., Virginia Tech, 2014. http://hdl.handle.net/10919/71346.

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Combinatorial approaches in metabolic engineering can make use of randomized mutations and/or overexpression of randomized DNA fragments. When DNA fragments are obtained from a common genome or metagenome and packaged into the same expression vector, this is referred to as a DNA library. Generating quality DNA libraries that incorporate broad genetic diversity is challenging, despite the availability of published protocols. In response, a novel, efficient, and reproducible technique for creating DNA libraries was created in this research based on whole genome amplification using degenerate oli
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Lu, Sijia. "Label-Free Optical Imaging of Chromophores and Genome Analysis at the Single Cell Level." Thesis, Harvard University, 2012. http://dissertations.umi.com/gsas.harvard:10563.

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Since the emergence of biology as a quantitative science in the past century, a lot of biological discoveries have been driven by milestone technical advances such as X-ray crystallography, fluorescence microscopy and high-throughput sequencing. Fluorescence microscopy is widely used to explore the nanoscale cellular world because of its superb sensitivity and spatial resolution. However, many species (e.g. lipids, small proteins) are non-fluorescent and are difficult to label without disturbing their native functions. In the first part of the dissertation, we explore using three different con
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Du, Breil de Pontbriand Alexandra. "Cartographie des génomes par HAPPY mapping. Développement d'une amplification "whole genome" et validation sur cartes comparatives homme/chimpanzé/gorille." Rennes 1, 2003. http://www.theses.fr/2003REN10104.

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La comparaison des génomes de grands singes et de l'homme devrait apporter de nouvelles informations concernant l'évolution de l'homme, ces différents genomes restant très proches. Le caryotype humain possède une paire de chromosomes en moins, le chromosome 2 humain étant issu de la fusion télomérique de deux chromosomes ancestraux de singes. Afin de pouvoir mettre en evidence les réarrangements qui ont amené à l'apparition de l'espèce humaine, nous avons décidé d'entreprendre une étude comparative entre l'homme, le chimpanzé et le gorille. Pour y parvenir, nous avons utilisé le HAPPY mapping
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Sandberg, Julia. "Massively parallel analysis of cells and nucleic acids." Doctoral thesis, KTH, Genteknologi, 2011. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-45671.

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Recent proceedings in biotechnology have enabled completely new avenues in life science research to be explored. By allowing increased parallelization an ever-increasing complexity of cell samples or experiments can be investigated in shorter time and at a lower cost. This facilitates for example large-scale efforts to study cell heterogeneity at the single cell level, by analyzing cells in parallel that also can include global genomic analyses. The work presented in this thesis focuses on massively parallel analysis of cells or nucleic acid samples, demonstrating technology developments in th
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Gabrieli, A. "STUDIO DI TECNOLOGIE DI AMPLIFICAZIONE E GENOTIPIZZAZIONE DEL GENOMA SU CAMPIONI DI DNA PROVENIENTI DA SANGUE E DA CELLULE DELLA BOCCA PER APPLICAZIONI IN AMBITO EPIDEMIOLOGICO." Doctoral thesis, Università degli Studi di Milano, 2010. http://hdl.handle.net/2434/150115.

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In epidemiological studies the amount of biological material available is a limiting factor. Many studies use DNA as biological sample obtained by venipuncture, but this collection method is invasive especially if donors are children and the elderly. The use of mouth cells can be an alternative source, although you get DNA of poor quality and quantity. To increase the amount of DNA extracted from buccal cells, you can use the "Whole Genome Amplification”. The aim of my PhD project was to develop a method to extract DNA from buccal cells and to study amplification technologies and subsequent ge
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Books on the topic "Whole genome amplification"

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Kroneis, Thomas, ed. Whole Genome Amplification. New York, NY: Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2990-0.

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Simon, Hughes, and Lasken R, eds. Whole genome amplification. Bloxham: Scion, 2005.

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Kroneis, Thomas. Whole Genome Amplification: Methods and Protocols. Springer New York, 2016.

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Kroneis, Thomas. Whole Genome Amplification: Methods and Protocols. Springer New York, 2015.

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(Editor), S. Hughes, and R. Lasken (Editor), eds. Whole Genome Amplification: Methods Express Series (Methods Express). Scion Publishing Ltd., 2005.

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(Editor), S. Hughes, and R. Lasken (Editor), eds. Whole Genome Amplification: Methods Express Series (Methods Express). Scion Publishing Ltd., 2005.

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Book chapters on the topic "Whole genome amplification"

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Gasch, Christin, Klaus Pantel, and Sabine Riethdorf. "Whole Genome Amplification in Genomic Analysis of Single Circulating Tumor Cells." In Whole Genome Amplification, 221–32. New York, NY: Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2990-0_15.

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Czyz, Zbigniew Tadeusz, Stefan Kirsch, and Bernhard Polzer. "Principles of Whole-Genome Amplification." In Whole Genome Amplification, 1–14. New York, NY: Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2990-0_1.

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Kroneis, Thomas, and Amin El-Heliebi. "Quality Control of Isothermal Amplified DNA Based on Short Tandem Repeat Analysis." In Whole Genome Amplification, 129–40. New York, NY: Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2990-0_10.

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Czyz, Zbigniew Tadeusz, Nikolas H. Stoecklein, and Bernhard Polzer. "Laser Microdissection of FFPE Tissue Areas and Subsequent Whole Genome Amplification by Ampli1™." In Whole Genome Amplification, 141–62. New York, NY: Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2990-0_11.

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Sørensen, Karina Meden. "Whole Genome Amplification from Blood Spot Samples." In Whole Genome Amplification, 163–78. New York, NY: Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2990-0_12.

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Fortes, Gloria Gonzales, and Johanna L. A. Paijmans. "Analysis of Whole Mitogenomes from Ancient Samples." In Whole Genome Amplification, 179–95. New York, NY: Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2990-0_13.

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Dimitriadou, Eftychia, Masoud Zamani Esteki, and Joris Robert Vermeesch. "Copy Number Variation Analysis by Array Analysis of Single Cells Following Whole Genome Amplification." In Whole Genome Amplification, 197–219. New York, NY: Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2990-0_14.

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Kroneis, Thomas, and Amin El-Heliebi. "Whole Genome Amplification of Labeled Viable Single Cells Suited for Array-Comparative Genomic Hybridization." In Whole Genome Amplification, 233–43. New York, NY: Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2990-0_16.

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Kroneis, Thomas, Shukun Chen, and Amin El-Heliebi. "Low-Volume On-Chip Single-Cell Whole Genome Amplification for Multiple Subsequent Analyses." In Whole Genome Amplification, 245–61. New York, NY: Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2990-0_17.

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Coumans, Frank, and Leon Terstappen. "Detection and Characterization of Circulating Tumor Cells by the CellSearch Approach." In Whole Genome Amplification, 263–78. New York, NY: Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2990-0_18.

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Conference papers on the topic "Whole genome amplification"

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Hara, Christine, Christine Nguyen, Elizabeth Wheeler, Karen Sorensen, Erin Arroyo, Greg Vrankovich, and Allen Christian. "Small sample whole-genome amplification." In Optics East 2005, edited by Brian M. Cullum and J. Chance Carter. SPIE, 2005. http://dx.doi.org/10.1117/12.630925.

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Xue, Crystal, Laura Gardner, Guanglong Jiang, Fei Shen, and Bryan Schneider. "Abstract 5401: Assessment of whole genome amplification for whole exome sequencing in detecting genetic mutation." In Proceedings: AACR Annual Meeting 2017; April 1-5, 2017; Washington, DC. American Association for Cancer Research, 2017. http://dx.doi.org/10.1158/1538-7445.am2017-5401.

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Edelman, Daniel C., Holly Stevenson, Miiia Suuriniemi, Parvati Singh, Jamie Rodriguez-Canales, Jeffery C. Hanson, Robert Walker, Michael R. Emmert-Buck, and Paul Meltzer. "Abstract 4862: Whole genome amplification allows for testing of valuable specimens by array comparative genomic hybridization." In Proceedings: AACR 102nd Annual Meeting 2011‐‐ Apr 2‐6, 2011; Orlando, FL. American Association for Cancer Research, 2011. http://dx.doi.org/10.1158/1538-7445.am2011-4862.

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Huang, Yanyi, and Fangli Zhang. "Spinning micro-pipette liquid emulsion generator for single cell whole genome amplification." In The 7th International Multidisciplinary Conference on Optofluidics 2017. Basel, Switzerland: MDPI, 2017. http://dx.doi.org/10.3390/optofluidics2017-04309.

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Needham, Rachel H. V., Arturo B. Ramirez, Iman Kishawi, Jackie L. Stilwell, and Eric P. Kaldjian. "Abstract 3615: Comparison of whole genome amplification methods on single and pooled cells for comparative genomic hybridization array analysis." In Proceedings: AACR 107th Annual Meeting 2016; April 16-20, 2016; New Orleans, LA. American Association for Cancer Research, 2016. http://dx.doi.org/10.1158/1538-7445.am2016-3615.

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Myllykangas, Samuel, Jason Buenrostro, John Bell, and Hanlee P. Ji. "Abstract 1160: Whole genome amplification and high-throughput sequencing of formalin-fixed paraffin-embedded colorectal cancer." In Proceedings: AACR 101st Annual Meeting 2010‐‐ Apr 17‐21, 2010; Washington, DC. American Association for Cancer Research, 2010. http://dx.doi.org/10.1158/1538-7445.am10-1160.

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Amiss, Terry J., Frances Tong, Eileen Snowden, Richard Kelly, Rainer Blaesius, Nick Herrmann, Friedrich Hahn, et al. "Abstract A38: Optimization of whole-genome amplification for analysis of single cells using next-generation sequencing." In Abstracts: AACR Precision Medicine Series: Drug Sensitivity and Resistance: Improving Cancer Therapy; June 18-21, 2014; Orlando, FL. American Association for Cancer Research, 2015. http://dx.doi.org/10.1158/1557-3265.pms14-a38.

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Liu, Haiyan E., Melanie Triboulet, Amin Zia, Meghah Vuppalapaty, Evelyn Kidess-Sigal, John Coller, Vanita S. Natu, et al. "Abstract 1724: Genomic profiling of Vortex-enriched CTCs using whole genome amplification and multiplex PCR-based targeted next generation sequencing." In Proceedings: AACR Annual Meeting 2017; April 1-5, 2017; Washington, DC. American Association for Cancer Research, 2017. http://dx.doi.org/10.1158/1538-7445.am2017-1724.

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Liu, Yuguang, Patricio Jeraldo, Samantha McDonough, Jin Jen, Robin Patel, Marina Walther-Antonio, Christopher Lambert, and Bruce Gale. "Experimental validation of an optofluidic platform for microbial single cell isolation and whole genome amplification for human microbiome applications." In 2017 IEEE International Symposium on Medical Measurements and Applications (MeMeA). IEEE, 2017. http://dx.doi.org/10.1109/memea.2017.7985850.

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Ericson, Nolan G., Arturo B. Ramirez, Alisa C. Clein, Celestia S. Higano, Daniel E. Sabath, and Eric P. Kaldjian. "Abstract 439: Targeted single cell DNA sequencing without prior whole genome amplification for mutational analysis of circulating tumor cells." In Proceedings: AACR Annual Meeting 2019; March 29-April 3, 2019; Atlanta, GA. American Association for Cancer Research, 2019. http://dx.doi.org/10.1158/1538-7445.sabcs18-439.

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