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Relevant bibliographies by topics / Xylose utilization

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Academic literature on the topic 'Xylose utilization'

Author: Grafiati

Published: 3 June 2025

Last updated: 31 July 2025

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Journal articles on the topic "Xylose utilization"

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Hector, Ronald E., Jeffrey A. Mertens, and Nancy N. Nichols. "Identification of Mutations Responsible for Improved Xylose Utilization in an Adapted Xylose Isomerase Expressing Saccharomyces cerevisiae Strain." Fermentation 8, no. 12 (2022): 669. http://dx.doi.org/10.3390/fermentation8120669.

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Economic conversion of biomass to biofuels and chemicals requires efficient and complete utilization of xylose. Saccharomyces cerevisiae strains engineered for xylose utilization are still considerably limited in their overall ability to metabolize xylose. In this study, we identified causative mutations resulting in improved xylose fermentation of an adapted S. cerevisiae strain expressing codon-optimized xylose isomerase and xylulokinase genes from the rumen bacterium Prevotella ruminicola. Genome sequencing identified single-nucleotide polymorphisms in seven open reading frames. Tetrad anal

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Kim, Jae-Han, Sharon P. Shoemaker, and David A. Mills. "Relaxed control of sugar utilization in Lactobacillus brevis." Microbiology 155, no. 4 (2009): 1351–59. http://dx.doi.org/10.1099/mic.0.024653-0.

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Prioritization of sugar consumption is a common theme in bacterial growth and a problem for complete utilization of five and six carbon sugars derived from lignocellulose. Growth studies show that Lactobacillus brevis simultaneously consumes numerous carbon sources and appears to lack normal hierarchical control of carbohydrate utilization. Analysis of several independent L. brevis isolates indicated that co-utilization of xylose and glucose is a common trait for this species. Moreover, carbohydrates that can be used as a single carbon source are simultaneously utilized with glucose. Analysis

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Panchal, Chandra J., Lynda Bast, Inge Russell, and Graham G. Stewart. "Repression of xylose utilization by glucose in xylose-fermenting yeasts." Canadian Journal of Microbiology 34, no. 12 (1988): 1316–20. http://dx.doi.org/10.1139/m88-230.

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The xylose-fermenting yeasts Pichia stipitis, Candida steatolytica, and Candida shehatae were subjected to fermentations in synthetic media containing mixtures of glucose and xylose. In all cases, repression of xylose uptake by glucose was observed, although the extent of repression was different with each yeast. While Candida shehatae was found to utilize xylose effectively in the presence of approximately 5% (w/v) glucose, Candida steatolytica could only utilize xylose when the glucose concentration was below 3% (w/v), and Pichia stipitis required the glucose concentration in the medium to b

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Zheng, Liyuan, Shan Wei, Meiling Wu, et al. "Improving Xylose Fermentation in Saccharomyces cerevisiae by Expressing Nuclear-Localized Hexokinase 2." Microorganisms 8, no. 6 (2020): 856. http://dx.doi.org/10.3390/microorganisms8060856.

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Understanding the relationship between xylose and the metabolic regulatory systems is a prerequisite to enhance xylose utilization in recombinant S. cerevisiae strains. Hexokinase 2 (Hxk2p) is an intracellular glucose sensor that localizes to the cytoplasm or the nucleus depending on the carbon source. Hxk2p interacts with Mig1p to regulate gene transcription in the nucleus. Here, we investigated the effect of nucleus-localized Hxk2p and Mig1p on xylose fermentation. The results show that the expression of HXK2S14A, which encodes a constitutively nucleus-localized Hxk2p, increased the xylose c

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Sonderegger, Marco, and Uwe Sauer. "Evolutionary Engineering of Saccharomyces cerevisiae for Anaerobic Growth on Xylose." Applied and Environmental Microbiology 69, no. 4 (2003): 1990–98. http://dx.doi.org/10.1128/aem.69.4.1990-1998.2003.

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ABSTRACT Xylose utilization is of commercial interest for efficient conversion of abundant plant material to ethanol. Perhaps the most important ethanol-producing organism, Saccharomyces cerevisiae, however, is incapable of xylose utilization. While S. cerevisiae strains have been metabolically engineered to utilize xylose, none of the recombinant strains or any other naturally occurring yeast has been able to grow anaerobically on xylose. Starting with the recombinant S. cerevisiae strain TMB3001 that overexpresses the xylose utilization pathway from Pichia stipitis, in this study we develope

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Klimacek, Mario, Stefan Krahulec, Uwe Sauer, and Bernd Nidetzky. "Limitations in Xylose-Fermenting Saccharomyces cerevisiae, Made Evident through Comprehensive Metabolite Profiling and Thermodynamic Analysis." Applied and Environmental Microbiology 76, no. 22 (2010): 7566–74. http://dx.doi.org/10.1128/aem.01787-10.

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ABSTRACT Little is known about how the general lack of efficiency with which recombinant Saccharomyces cerevisiae strains utilize xylose affects the yeast metabolome. Quantitative metabolomics was therefore performed for two xylose-fermenting S. cerevisiae strains, BP000 and BP10001, both engineered to produce xylose reductase (XR), NAD+-dependent xylitol dehydrogenase and xylulose kinase, and the corresponding wild-type strain CEN.PK 113-7D, which is not able to metabolize xylose. Contrary to BP000 expressing an NADPH-preferring XR, BP10001 expresses an NADH-preferring XR. An updated protocol

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Ikawa, Yumi, Sayaka Ohnishi, Akiko Shoji, Ayako Furutani, and Seiji Tsuge. "Concomitant Regulation by a LacI-Type Transcriptional Repressor XylR on Genes Involved in Xylan and Xylose Metabolism and the Type III Secretion System in Rice Pathogen Xanthomonas oryzae pv. oryzae." Molecular Plant-Microbe Interactions® 31, no. 6 (2018): 605–13. http://dx.doi.org/10.1094/mpmi-11-17-0277-r.

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The hypersensitive response and pathogenicity (hrp) genes of Xanthomonas oryzae pv. oryzae, the causal agent of bacterial leaf blight of rice, encode components of the type III secretion system and are essential for virulence. Expression of hrp genes is regulated by two key hrp regulators, HrpG and HrpX; HrpG regulates hrpX and hrpA, and HrpX regulates the other hrp genes on hrpB-hrpF operons. We previously reported the sugar-dependent quantitative regulation of HrpX; the regulator highly accumulates in the presence of xylose, followed by high hrp gene expression. Here, we found that, in a mut

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Liu, Yunhao, Paul B. Rainey, and Xue-Xian Zhang. "Molecular mechanisms of xylose utilization byPseudomonas fluorescens: overlapping genetic responses to xylose, xylulose, ribose and mannitol." Molecular Microbiology 98, no. 3 (2015): 553–70. http://dx.doi.org/10.1111/mmi.13142.

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Meijnen, Jean-Paul, Johannes H. de Winde, and Harald J. Ruijssenaars. "Engineering Pseudomonas putida S12 for Efficient Utilization of d-Xylose and l-Arabinose." Applied and Environmental Microbiology 74, no. 16 (2008): 5031–37. http://dx.doi.org/10.1128/aem.00924-08.

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ABSTRACT The solvent-tolerant bacterium Pseudomonas putida S12 was engineered to utilize xylose as a substrate by expressing xylose isomerase (XylA) and xylulokinase (XylB) from Escherichia coli. The initial yield on xylose was low (9% [g CDW g substrate−1], where CDW is cell dry weight), and the growth rate was poor (0.01 h−1). The main cause of the low yield was the oxidation of xylose into the dead-end product xylonate by endogenous glucose dehydrogenase (Gcd). Subjecting the XylAB-expressing P. putida S12 to laboratory evolution yielded a strain that efficiently utilized xylose (yield, 52%

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Erbeznik, Milutin, Karl A. Dawson, and Herbert J. Strobel. "Cloning and Characterization of Transcription of the xylAB Operon in Thermoanaerobacter ethanolicus." Journal of Bacteriology 180, no. 5 (1998): 1103–9. http://dx.doi.org/10.1128/jb.180.5.1103-1109.1998.

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ABSTRACT The genes encoding xylose isomerase (xylA) and xylulose kinase (xylB) from the thermophilic anaerobeThermoanaerobacter ethanolicus were found to constitute an operon with the transcription initiation site 169 nucleotides upstream from the previously assigned (K. Dekker, H. Yamagata, K. Sakaguchi, and S. Udaka, Agric. Biol. Chem. 55:221–227, 1991) promoter region. The bicistronic xylAB mRNA was processed by cleavage within the 5′-terminal portion of the XylB-coding sequence. Transcription ofxylAB was induced in the presence of xylose, and, unlike in all other xylose-utilizing bacteria

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Dissertations / Theses on the topic "Xylose utilization"

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Radek, Andreas [Verfasser], Alexander [Akademischer Betreuer] Grünberger, and Wolfgang [Akademischer Betreuer] Wiechert. "Establishing the Weimberg pathway in Corynebacterium glutamicum as an alternative route for D-xylose utilization / Andreas Radek ; Alexander Grünberger, Wolfgang Wiechert." Bielefeld : Universitätsbibliothek Bielefeld, 2018. http://d-nb.info/1160033293/34.

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Wubbolts, Marcel Gerhardus. "Xylene and alkane mono-oxygenases from Pseudomonas putida genetics, regulated expression and utilization in the synthesis of optically active synthons /." [S.l. : [Groningen : s.n.] ; University Library Groningen] [Host], 1994. http://irs.ub.rug.nl/ppn/29797291X.

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Chiang, Hsin-Wei, and 江信謂. "Using homologous recombination to knockout gene of glucokinase to reduce glucose uptake by Pichia stipitis and upgrade xylose utilization." Thesis, 2012. http://ndltd.ncl.edu.tw/handle/34031494555674245288.

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碩士<br>國立中正大學<br>化學工程研究所<br>100<br>Pichia stipitis is a yeast capable of metabolizing glucose and xylose naturally with exceptionally high conversion for ethanol from xylose. However, the conversion efficiency for ethanol from glucose was ordinary. The presence of hexose (glucose) during the fermentation process would inhibit the uptake of xylose by yeast. In this study, a plasmid containing the genes of antibiotic resistance and sequences for gene deficiency glucokinase was constructed and transformed to the yeast by lithium acetate transformation method for homologous recombination. The gluco

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Book chapters on the topic "Xylose utilization"

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Ashby, Richard D. "Xylose Utilization for Polyhydroxyalkanoate Biosynthesis." In ACS Symposium Series. American Chemical Society, 2020. http://dx.doi.org/10.1021/bk-2020-1373.ch007.

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Goldman, Gustavo H. "Genetic Improvement of Xylose Utilization by Saccharomyces cerevisiae." In Routes to Cellulosic Ethanol. Springer New York, 2010. http://dx.doi.org/10.1007/978-0-387-92740-4_10.

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Hahn-Hägerdal, Bärbel, C. Fredrik Wahlbom, Márk Gárdonyi, Willem H. van Zyl, Ricardo R. Cordero Otero, and Leif J. Jönsson. "Metabolic Engineering of Saccharomyces cerevisiae for Xylose Utilization." In Advances in Biochemical Engineering/Biotechnology. Springer Berlin Heidelberg, 2001. http://dx.doi.org/10.1007/3-540-45300-8_4.

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Xu, Jie, Anu Das, Jarrod Erbe, L. M. Hall, and Kenneth B. Taylor. "Genetic Engineering for Productivity in the Fermentation of Xylose to Ethanol." In Conversion And Utilization Of Waste Materials. Routledge, 2023. http://dx.doi.org/10.1201/9781315140360-14.

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Malan, Ana Karen, Alejandra Fagundez, Paul R. Gill, and Silvia B. Batista. "Engineering Hemicellulose-Derived Xylose Utilization in Saccharomyces cerevisiae for Biotechnological Applications." In Microbial Models: From Environmental to Industrial Sustainability. Springer Singapore, 2016. http://dx.doi.org/10.1007/978-981-10-2555-6_3.

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Han, Jing, Guoli Gong, Xia Wu, and Jian Zha. "Systematic Metabolic Engineering of Saccharomyces cerevisiae for Efficient Utilization of Xylose." In Emerging Technologies for Biorefineries, Biofuels, and Value-Added Commodities. Springer International Publishing, 2021. http://dx.doi.org/10.1007/978-3-030-65584-6_7.

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Yohana, Thesalonica, M. Zuvan Maulana Fahrezi, Adetya Lianawati, et al. "Preliminary Study on the Utilization of Sugarcane Trash and Corncob for Xylo-Oligosaccharides and Xylose Production Through Dilute Acid Hydrolysis." In Springer Proceedings in Physics. Springer Nature Singapore, 2022. http://dx.doi.org/10.1007/978-981-19-0308-3_25.

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Nalawade, Ketaki, Paharika Saikia, Sukhendra Singh, Shuvashish Behera, Kakasaheb Konde, and Sanjay Patil. "Utilization of Plant-derived Wastes For Value Added Product Formation." In Waste Valorization for Value-added Products. BENTHAM SCIENCE PUBLISHERS, 2023. http://dx.doi.org/10.2174/9789815123074123010004.

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Depletion of fossil fuels and environmental concern has impelled to search for alternative biofuels and biobased chemicals. Biofuels have been considered an alternative clean energy carrier due to their environmentally friendly nature. Recently, research has been focused on finding a readily available, low-cost and renewable lignocellulosic biomass to produce value-added products. In this context, the plant-derived organic wastes can be transformed to produce biofuels (bioethanol, biobutanol, biogas and biohydrogen) and biochemicals (lactic acid, succinic acid, xylose and xylitol). It will be

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Ho, Hooi Ling. "Biotechnology of Microbial Xylanase." In Biotechnology. IGI Global, 2019. http://dx.doi.org/10.4018/978-1-5225-8903-7.ch059.

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Xylanases are inducible enzymes responsible for the complete hydrolysis of xylan into xylose. Both solid state fermentation (SsF) and submerged fermentation (SmF) are used in the production of xylanase. SsF has become a popular approach due to its economic value. In fact, higher biomass and lower protein breakdown are among the factors involved in determining the production of xylanases in SsF. Agricultural extracts which are abundantly available in the environment such as rice bran and wheat bran are commonly used as the potential carbon source in xylanases production. Xylanase is indeed one

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Ho, Hooi Ling. "Biotechnology of Microbial Xylanase." In Research Advancements in Pharmaceutical, Nutritional, and Industrial Enzymology. IGI Global, 2018. http://dx.doi.org/10.4018/978-1-5225-5237-6.ch013.

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Xylanases are inducible enzymes responsible for the complete hydrolysis of xylan into xylose. Both solid state fermentation (SsF) and submerged fermentation (SmF) are used in the production of xylanase. SsF has become a popular approach due to its economic value. In fact, higher biomass and lower protein breakdown are among the factors involved in determining the production of xylanases in SsF. Agricultural extracts which are abundantly available in the environment such as rice bran and wheat bran are commonly used as the potential carbon source in xylanases production. Xylanase is indeed one

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Conference papers on the topic "Xylose utilization"

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Zhang, Ying, Shuang Zhu, Jing Yang, Chunyan He, and Lin Zhou. "Characterization of a Cellulose and Xylose Utilization Bacillus cereus Yc-A1." In International Conference on Advances in Energy, Environment and Chemical Engineering. Atlantis Press, 2015. http://dx.doi.org/10.2991/aeece-15.2015.157.

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Mishra, Amit, Saurabh Vats, Carlos A. Palacios T., Himanshu Joshi, and Ishan Khurana. "Complete Integrity Assessment of a Non-Piggable Multi-Diameter Cross Country Pipeline in a Network Shared by Multiple Electrically Continuous Parallel Pipelines." In ASME 2021 India Oil and Gas Pipeline Conference. American Society of Mechanical Engineers, 2021. http://dx.doi.org/10.1115/iogpc2021-64086.

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Abstract A complete Pipeline Integrity Management System is the need of the hour. Apart from keeping in mind the enormous environment concerns in this rapidly dwindling era of hydrocarbons, a successful pipeline owner always strives to profitably operate their precious assets. To operate a pipeline efficiently, a plan is required to maintain its health and increase the remaining life. Various types of pipelines pose various problems which the owner needs to resolve systematically and with a well-ordered approach. A similar challenge was faced by a refinery in India. The refinery has a design c

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Quainoo, Kwamena Ato, Imqam Abdulmohsin, and Cornelius Borecho Bavoh. "Kinetic Experimental and Modeling Evaluations of Asphaltene Morphology and Growth Rate under Varying Temperature and Brine Conditions." In SPE International Conference on Oilfield Chemistry. SPE, 2023. http://dx.doi.org/10.2118/213811-ms.

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ABSTRACT The utilization of predictive mechanisms to resolve asphaltene precipitation during oil production is a cleaner and less expensive means than the mechanical/chemical remediation techniques currently employed. Existing models lack predictive success due to opposing views on temperature-asphaltene precipitation interactions. In this study, the effect of varying temperatures (40, 50, 60, 70 80 and 90 °C) and brine concentrations (0 – 5 wt.%) on the long-time kinetics of asphaltene precipitations was evaluated. A series of experiments were conducted using the filtration technique and the

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Maharaj, Tushara, Marc Rudder, Vyshaia Singh, Wayne Rajkumar, and Vidjaya Ramkhalawan. "A New Produced Water Management Policy for the Energy Sector of Trinidad and Tobago." In SPE Trinidad and Tobago Section Energy Resources Conference. SPE, 2021. http://dx.doi.org/10.2118/200926-ms.

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Abstract A Produced Water (PW) Management framework is presented, forming part of an Upstream Effluent Management (UEM) Policy. It addresses the minimization and ultimate elimination of treated and untreated PW discharge by utilization of an integrated management approach to ensure Zero Harmful Discharge (ZHD) to the environment. This approach targeted legislative reform, sustainable PW management practices, monitoring and evaluation, research and development and sustainable production patterns. A Cabinet-appointed Upstream Effluent Management Committee was established for evaluating the statu

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