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Journal articles on the topic 'Biosynthesis. Enzymology'

Author: Grafiati

Published: 4 June 2021

Last updated: 13 February 2022

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1

Nakayama, Toru. "Enzymology of aurone biosynthesis." Journal of Bioscience and Bioengineering 94, no. 6 (2002): 487–91. http://dx.doi.org/10.1016/s1389-1723(02)80184-0.

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2

Schneider, Gunter, and Ylva Lindqvist. "Structural enzymology of biotin biosynthesis." FEBS Letters 495, no. 1-2 (2001): 7–11. http://dx.doi.org/10.1016/s0014-5793(01)02325-0.

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3

Reeves, Christopher D. "The Enzymology of Combinatorial Biosynthesis." Critical Reviews in Biotechnology 23, no. 2 (2003): 95–147. http://dx.doi.org/10.1080/713609311.

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4

Niemetz, Ruth, and Georg G. Gross. "Enzymology of gallotannin and ellagitannin biosynthesis." Phytochemistry 66, no. 17 (2005): 2001–11. http://dx.doi.org/10.1016/j.phytochem.2005.01.009.

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5

Leadlay, Peter F. "The Enzymology of Polyketide Antibiotic Biosynthesis." Biochemical Society Transactions 27, no. 1 (1999): A3. http://dx.doi.org/10.1042/bst027a003a.

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6

Crosa, Jorge H., and Christopher T. Walsh. "Genetics and Assembly Line Enzymology of Siderophore Biosynthesis in Bacteria." Microbiology and Molecular Biology Reviews 66, no. 2 (2002): 223–49. http://dx.doi.org/10.1128/mmbr.66.2.223-249.2002.

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SUMMARY The regulatory logic of siderophore biosynthetic genes in bacteria involves the universal repressor Fur, which acts together with iron as a negative regulator. However in other bacteria, in addition to the Fur-mediated mechanism of regulation, there is a concurrent positive regulation of iron transport and siderophore biosynthetic genes that occurs under conditions of iron deprivation. Despite these regulatory differences the mechanisms of siderophore biosynthesis follow the same fundamental enzymatic logic, which involves a series of elongating acyl-S-enzyme intermediates on multimodu

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7

Kershaw, Nadia J., Matthew E. C. Caines, Mark C. Sleeman, and Christopher J. Schofield. "The enzymology of clavam and carbapenem biosynthesis." Chemical Communications, no. 34 (2005): 4251. http://dx.doi.org/10.1039/b505964j.

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8

Minto, Robert E., and Craig A. Townsend. "Enzymology and Molecular Biology of Aflatoxin Biosynthesis." Chemical Reviews 97, no. 7 (1997): 2537–56. http://dx.doi.org/10.1021/cr960032y.

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9

Kutchan, T. M., H. Dittrich, D. Bracher, and M. H. Zenk. "Enzymology and molecular biology of alkaloid biosynthesis." Tetrahedron 47, no. 31 (1991): 5945–54. http://dx.doi.org/10.1016/s0040-4020(01)86487-5.

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10

Wilton, David. "Phospholipid biosynthesis (methods in enzymology, vol. 209)." FEBS Letters 316, no. 2 (1993): 198–99. http://dx.doi.org/10.1016/0014-5793(93)81217-n.

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11

Kedishvili, Natalia Y. "Enzymology of retinoic acid biosynthesis and degradation." Journal of Lipid Research 54, no. 7 (2013): 1744–60. http://dx.doi.org/10.1194/jlr.r037028.

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12

Hunter, C. N. "The biochemistry and enzymology of chlorophyll biosynthesis." Biochemical Society Transactions 30, no. 3 (2002): A48. http://dx.doi.org/10.1042/bst030a048a.

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13

Joshi, Sumedh, Dmytro Fedoseyenko, Nilkamal Mahanta, et al. "Novel enzymology in futalosine-dependent menaquinone biosynthesis." Current Opinion in Chemical Biology 47 (December 2018): 134–41. http://dx.doi.org/10.1016/j.cbpa.2018.09.015.

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14

Martens, S., and G. Forkmann. "FLAVONOID BIOSYNTHESIS IN GERBERA-HYBRIDS: ENZYMOLOGY AND GENETICS." Acta Horticulturae, no. 508 (January 2000): 39–44. http://dx.doi.org/10.17660/actahortic.2000.508.3.

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15

Scott, Thomas A., and Jörn Piel. "The hidden enzymology of bacterial natural product biosynthesis." Nature Reviews Chemistry 3, no. 7 (2019): 404–25. http://dx.doi.org/10.1038/s41570-019-0107-1.

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16

Drevland, Randy M., Abdul Waheed, and David E. Graham. "Enzymology and Evolution of the Pyruvate Pathway to 2-Oxobutyrate in Methanocaldococcus jannaschii." Journal of Bacteriology 189, no. 12 (2007): 4391–400. http://dx.doi.org/10.1128/jb.00166-07.

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ABSTRACT The archaeon Methanocaldococcus jannaschii uses three different 2-oxoacid elongation pathways, which extend the chain length of precursors in leucine, isoleucine, and coenzyme B biosyntheses. In each of these pathways an aconitase-type hydrolyase catalyzes an hydroxyacid isomerization reaction. The genome sequence of M. jannaschii encodes two homologs of each large and small subunit that forms the hydrolyase, but the genes are not cotranscribed. The genes are more similar to each other than to previously characterized isopropylmalate isomerase or homoaconitase enzyme genes. To identif

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17

Chen, Ming, Jingyu Liu, Panpan Duan, Mulin Li, and Wen Liu. "Biosynthesis and molecular engineering of templated natural products." National Science Review 4, no. 4 (2016): 553–75. http://dx.doi.org/10.1093/nsr/nww045.

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Abstract Bioactive small molecules that are produced by living organisms, often referred to as natural products (NPs), historically play a critical role in the context of both medicinal chemistry and chemical biology. How nature creates these chemical entities with stunning structural complexity and diversity using a limited range of simple substrates has not been fully understood. Focusing on two types of NPs that share a highly evolvable ‘template’-biosynthetic logic, we here provide specific examples to highlight the conceptual and technological leaps in NP biosynthesis and witness the area

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18

Go, Maybelle Kho, Jantana Wongsantichon, Vivian Wing Ngar Cheung, Jeng Yeong Chow, Robert C. Robinson, and Wen Shan Yew. "Synthetic Polyketide Enzymology: Platform for Biosynthesis of Antimicrobial Polyketides." ACS Catalysis 5, no. 7 (2015): 4033–42. http://dx.doi.org/10.1021/acscatal.5b00477.

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19

Jordan, Peter M., and Jonathan B. Spencer. "The biosynthesis of tetraketides: enzymology, mechanism and molecular programming." Biochemical Society Transactions 21, no. 1 (1993): 222–28. http://dx.doi.org/10.1042/bst0210222.

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20

Luhavaya, Hanna, Marcio V. B. Dias, Simon R. Williams, Hui Hong, Luciana G. de Oliveira, and Peter F. Leadlay. "Enzymology of Pyran Ring A Formation in Salinomycin Biosynthesis." Angewandte Chemie 127, no. 46 (2015): 13826–29. http://dx.doi.org/10.1002/ange.201507090.

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21

Luhavaya, Hanna, Marcio V. B. Dias, Simon R. Williams, Hui Hong, Luciana G. de Oliveira, and Peter F. Leadlay. "Enzymology of Pyran Ring A Formation in Salinomycin Biosynthesis." Angewandte Chemie International Edition 54, no. 46 (2015): 13622–25. http://dx.doi.org/10.1002/anie.201507090.

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22

MINTO, R. E., and C. A. TOWNSEND. "ChemInform Abstract: Enzymology and Molecular Biology of Aflatoxin Biosynthesis." ChemInform 29, no. 6 (2010): no. http://dx.doi.org/10.1002/chin.199806312.

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23

KUTCHAN, T. M., H. DITTRICH, D. BRACHER, and M. H. ZENK. "ChemInform Abstract: Enzymology and Molecular Biology of Alkaloid Biosynthesis." ChemInform 22, no. 47 (2010): no. http://dx.doi.org/10.1002/chin.199147327.

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24

Kohli, Rahul M., and Christopher T. Walsh. "Enzymology of acyl chain macrocyclization in natural product biosynthesis." Chemical Communications, no. 3 (November 22, 2002): 297–307. http://dx.doi.org/10.1039/b208333g.

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25

Hemmerling, Franziska, and Frank Hahn. "Biosynthesis of oxygen and nitrogen-containing heterocycles in polyketides." Beilstein Journal of Organic Chemistry 12 (July 20, 2016): 1512–50. http://dx.doi.org/10.3762/bjoc.12.148.

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This review highlights the biosynthesis of heterocycles in polyketide natural products with a focus on oxygen and nitrogen-containing heterocycles with ring sizes between 3 and 6 atoms. Heterocycles are abundant structural elements of natural products from all classes and they often contribute significantly to their biological activity. Progress in recent years has led to a much better understanding of their biosynthesis. In this context, plenty of novel enzymology has been discovered, suggesting that these pathways are an attractive target for future studies.

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26

Vance, Dennis E. "Phosphatidylcholine metabolism: masochistic enzymology, metabolic regulation, and lipoprotein assembly." Biochemistry and Cell Biology 68, no. 10 (1990): 1151–65. http://dx.doi.org/10.1139/o90-172.

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Phosphatidylcholine is apparently essential for mammalian life, since there are no known inherited diseases in the biosynthesis of this lipid. One of its critical roles appears to be in the structure of the eucaryotic membranes. Why phosphatidylcholine is required and why other phospholipids will not substitute are unknown. The major pathway for the biosynthesis of phosphatidylcholine occurs via the CDP-choline pathway. Choline kinase, the initial enzyme in the sequence, has been purified to homogeneity from kidney and liver and also catalyzes the phosphorylation of ethanolamine. Most evidence

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27

Martens, S., and G. Forkmann. "FLAVONOID BIOSYNTHESIS IN GERBERA HYBRIDS: GENETICS AND ENZYMOLOGY OF FLAVONES." Acta Horticulturae, no. 521 (January 2000): 67–72. http://dx.doi.org/10.17660/actahortic.2000.521.5.

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28

Ishikawa, Fumihiro, and Hideaki Kakeya. "Recent Advances in Adenylation Domain Enzymology in Nonribosomal Peptide Biosynthesis." Current Organic Chemistry 19, no. 13 (2015): 1204–21. http://dx.doi.org/10.2174/1385272819666150410003958.

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29

Begley, Tadhg P., Jun Xi, Cynthia Kinsland, Sean Taylor, and Fred McLafferty. "The enzymology of sulfur activation during thiamin and biotin biosynthesis." Current Opinion in Chemical Biology 3, no. 5 (1999): 623–29. http://dx.doi.org/10.1016/s1367-5931(99)00018-6.

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30

Nielsen, Jennifer B., Ming Jo Hsu, Kevin M. Byrne, and Louis Kaplan. "Biosynthesis of the immunosuppressant immunomycin: the enzymology of pipecolate incorporation." Biochemistry 30, no. 23 (1991): 5789–96. http://dx.doi.org/10.1021/bi00237a023.

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31

Khosla, Chaitan. "Natural Product Biosynthesis: A New Interface between Enzymology and Medicine." Journal of Organic Chemistry 65, no. 24 (2000): 8127–33. http://dx.doi.org/10.1021/jo000849y.

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32

Fichman, Yosef, Svetlana Y. Gerdes, Hajnalka Kovács, László Szabados, Aviah Zilberstein, and Laszlo N. Csonka. "Evolution of proline biosynthesis: enzymology, bioinformatics, genetics, and transcriptional regulation." Biological Reviews 90, no. 4 (2014): 1065–99. http://dx.doi.org/10.1111/brv.12146.

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33

Lu, Hong, Xiaofeng Meng, Chuan Li, et al. "Glucuronides of Tea Catechins: Enzymology of Biosynthesis and Biological Activities." Drug Metabolism and Disposition 31, no. 4 (2003): 452–61. http://dx.doi.org/10.1124/dmd.31.4.452.

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34

Tao, Hui, and Ikuro Abe. "Enzymology and biosynthesis of the orsellinic acid derived medicinal meroterpenoids." Current Opinion in Biotechnology 69 (June 2021): 52–59. http://dx.doi.org/10.1016/j.copbio.2020.11.016.

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35

Peck, Spencer C., and Wilfred A. van der Donk. "Phosphonate biosynthesis and catabolism: a treasure trove of unusual enzymology." Current Opinion in Chemical Biology 17, no. 4 (2013): 580–88. http://dx.doi.org/10.1016/j.cbpa.2013.06.018.

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36

Robinson, J. A., та D. Gani. "Enzymology in biosynthesis: mechanistic and stereochemical studies of β-lactam biosynthesis and the shikimate pathway". Nat. Prod. Rep. 2, № 4 (1985): 293–319. http://dx.doi.org/10.1039/np9850200293.

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37

Rohdich, F., A. Bacher, and W. Eisenreich. "Isoprenoid biosynthetic pathways as anti-infective drug targets." Biochemical Society Transactions 33, no. 4 (2005): 785–91. http://dx.doi.org/10.1042/bst0330785.

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IPP (isopentenyl diphosphate) and DMAPP (dimethylallyl diphosphate) serve as the universal precursors for the biosynthesis of isoprenoids. Besides the well-known mevalonate pathway, the existence of a second biosynthetic pathway conducive to IPP and DMAPP formation through 1-deoxy-D-xylulose 5-phosphate and 2C-methyl-D-erythritol 4-phosphate was discovered approx. 10 years ago in plants and certain eubacteria. It is now known that this pathway is widely distributed in the bacterial kingdom including major human pathogens, such as Mycobacterium tuberculosis and Helicobacter pylori. The pathway

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38

Hermann, Lucas, Christopher-Nils Mais, Laura Czech, Sander H. J. Smits, Gert Bange, and Erhard Bremer. "The ups and downs of ectoine: structural enzymology of a major microbial stress protectant and versatile nutrient." Biological Chemistry 401, no. 12 (2020): 1443–68. http://dx.doi.org/10.1515/hsz-2020-0223.

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AbstractEctoine and its derivative 5-hydroxyectoine are compatible solutes and chemical chaperones widely synthesized by Bacteria and some Archaea as cytoprotectants during osmotic stress and high- or low-growth temperature extremes. The function-preserving attributes of ectoines led to numerous biotechnological and biomedical applications and fostered the development of an industrial scale production process. Synthesis of ectoines requires the expenditure of considerable energetic and biosynthetic resources. Hence, microorganisms have developed ways to exploit ectoines as nutrients when they

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39

Hunter, Gregory A., and Gloria C. Ferreira. "Molecular enzymology of 5-Aminolevulinate synthase, the gatekeeper of heme biosynthesis." Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1814, no. 11 (2011): 1467–73. http://dx.doi.org/10.1016/j.bbapap.2010.12.015.

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40

Ishida, T., L. Yu, H. Akutsu, et al. "A primitive pathway of porphyrin biosynthesis and enzymology in Desulfovibrio vulgaris." Proceedings of the National Academy of Sciences 95, no. 9 (1998): 4853–58. http://dx.doi.org/10.1073/pnas.95.9.4853.

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41

Hill, Alison M. "The biosynthesis, molecular genetics and enzymology of the polyketide-derived metabolites." Nat. Prod. Rep. 23, no. 2 (2006): 256–320. http://dx.doi.org/10.1039/b301028g.

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42

Smanski, Michael J., Ryan M. Peterson, Sheng-Xiong Huang, and Ben Shen. "Bacterial diterpene synthases: new opportunities for mechanistic enzymology and engineered biosynthesis." Current Opinion in Chemical Biology 16, no. 1-2 (2012): 132–41. http://dx.doi.org/10.1016/j.cbpa.2012.03.002.

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43

Cossins, Edwin A. "Canadian Society of Plant Physiologists Gold Medal Review / Synthèse médaillée d'or de la Société canadienne physiologie végétaleThe fascinating world of folate and one-carbon metabolism." Canadian Journal of Botany 78, no. 6 (2000): 691–708. http://dx.doi.org/10.1139/b00-061.

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Folate was first isolated from spinach leaves in 1941 and characterized as pteroylglutamic acid. Although plants, fungi, and bacteria synthesize folate de novo, animal cells lack key enzymes of the folate biosynthetic pathway and a dietary source of folate is required for normal growth and development. Folates have importance in human nutrition, health, and disease, and antifolate drugs are commonly used in cancer chemotherapy. In the majority of living cells folates occur as one-carbon substituted tetrahydropteroylpolyglutamate derivatives. These folates donate one-carbon groups during the sy

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44

Ciulli, A., and C. Abell. "Biophysical tools to monitor enzyme–ligand interactions of enzymes involved in vitamin biosynthesis." Biochemical Society Transactions 33, no. 4 (2005): 767–71. http://dx.doi.org/10.1042/bst0330767.

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Knowledge of biomolecular interactions is of importance to our understanding of biological processes such as enzyme catalysis and inhibition. Biophysical techniques enable sensitive detection and accurate characterization of binding and are therefore powerful tools in enzymology and rational drug design. The applications of NMR spectroscopy and isothermal titration calorimetry to study enzyme–ligand interactions will be discussed. Recent work on ketopantoate reductase, which catalyses an important step on the biosynthetic pathway to vitamin B5, is used to illustrate the potential of this appro

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45

RAHIER, ALAIN, and MARYSE TATON. "Plant sterol biosynthesis inhibitors: the 14-demethylation steps, their enzymology and inhibition." Biochemical Society Transactions 18, no. 1 (1990): 52–56. http://dx.doi.org/10.1042/bst0180052.

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46

Hou, Xian-Feng, Yu-Jiao Song, Mei Zhang та ін. "Enzymology of Anthraquinone-γ-Pyrone Ring Formation in Complex Aromatic Polyketide Biosynthesis". Angewandte Chemie 130, № 41 (2018): 13663–67. http://dx.doi.org/10.1002/ange.201806729.

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47

Khosla, Chaitan. "ChemInform Abstract: Natural Product Biosynthesis: A New Interface Between Enzymology and Medicine." ChemInform 32, no. 10 (2001): no. http://dx.doi.org/10.1002/chin.200110295.

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48

Hou, Xian-Feng, Yu-Jiao Song, Mei Zhang та ін. "Enzymology of Anthraquinone-γ-Pyrone Ring Formation in Complex Aromatic Polyketide Biosynthesis". Angewandte Chemie International Edition 57, № 41 (2018): 13475–79. http://dx.doi.org/10.1002/anie.201806729.

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49

Liu, Kun, and Shengying Li. "Biosynthesis of fatty acid-derived hydrocarbons: perspectives on enzymology and enzyme engineering." Current Opinion in Biotechnology 62 (April 2020): 7–14. http://dx.doi.org/10.1016/j.copbio.2019.07.005.

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50

Hotter, Grant S. "Elicitor-induced Oxidative Burst and Phenylpropanoid Metabolism in Pinus radiata Cell Suspension Cultures." Functional Plant Biology 24, no. 6 (1997): 797. http://dx.doi.org/10.1071/pp96094.

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A cell wall elicitor preparation from the needle pathogen Dothistroma pini was used to induce defence responses in Pinus radiata cell suspension cultures. Addition of elicitor to cell suspensions induced a rapid, transient burst in the accumulation of H2O2, with maximal response between 20 and 40 min post-elicitation. The protein kinase inhibitors staurosporine and K252a inhibited H2O2 accumulation showing that protein phosphorylation is required in the signal transduction pathway leading to the oxidative burst. Over a more extended time period elicitation of suspension cells lead to the activ

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