Relevant bibliographies by topics / Crosslinking mass spectrometry

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  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers
  6. Reports

Academic literature on the topic 'Crosslinking mass spectrometry'

Author: Grafiati
Published: 15 June 2024
Last updated: 31 July 2025

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Journal articles on the topic "Crosslinking mass spectrometry"

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Sinz, Andrea. "Crosslinking Mass Spectrometry Goes In-Tissue." Cell Systems 6, no. 1 (2018): 10–12. http://dx.doi.org/10.1016/j.cels.2018.01.005.

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Schneider, Michael, Adam Belsom, and Juri Rappsilber. "Protein Tertiary Structure by Crosslinking/Mass Spectrometry." Trends in Biochemical Sciences 43, no. 3 (2018): 157–69. http://dx.doi.org/10.1016/j.tibs.2017.12.006.

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Chen, Zhuo Angel, and Juri Rappsilber. "Protein structure dynamics by crosslinking mass spectrometry." Current Opinion in Structural Biology 80 (June 2023): 102599. http://dx.doi.org/10.1016/j.sbi.2023.102599.

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Xia, Yingzi. "Exploring misfolded proteins with crosslinking mass spectrometry." Biophysical Journal 123, no. 3 (2024): 206a. http://dx.doi.org/10.1016/j.bpj.2023.11.1301.

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Petrotchenko, Evgeniy V., and Christoph H. Borchers. "Crosslinking combined with mass spectrometry for structural proteomics." Mass Spectrometry Reviews 29, no. 6 (2010): 862–76. http://dx.doi.org/10.1002/mas.20293.

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Dancy, Beverley M., Fan Liu, Philip Lössl, Albert J. R. Heck, and Robert S. Balaban. "The mitochondrial interactome visualized by crosslinking mass spectrometry." Biochimica et Biophysica Acta (BBA) - Bioenergetics 1857 (August 2016): e22. http://dx.doi.org/10.1016/j.bbabio.2016.04.045.

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Singh, Arunima. "Crosslinking mass spectrometry data bolster protein structure prediction." Nature Methods 20, no. 5 (2023): 633. http://dx.doi.org/10.1038/s41592-023-01890-3.

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Graziadei, Andrea, and Juri Rappsilber. "Leveraging crosslinking mass spectrometry in structural and cell biology." Structure 30, no. 1 (2022): 37–54. http://dx.doi.org/10.1016/j.str.2021.11.007.

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Chen, Zhuo A., and Juri Rappsilber. "Protein Dynamics in Solution by Quantitative Crosslinking/Mass Spectrometry." Trends in Biochemical Sciences 43, no. 11 (2018): 908–20. http://dx.doi.org/10.1016/j.tibs.2018.09.003.

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Bullock, Joshua Matthew Allen, Neeladri Sen, Konstantinos Thalassinos, and Maya Topf. "Modeling Protein Complexes Using Restraints from Crosslinking Mass Spectrometry." Structure 26, no. 7 (2018): 1015–24. http://dx.doi.org/10.1016/j.str.2018.04.016.

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Dissertations / Theses on the topic "Crosslinking mass spectrometry"

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Taverner, Thomas. "Protein complex architecture from mass spectrometry, crosslinking and informatics." Thesis, University of Cambridge, 2007. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.612836.

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Mak, Esther W. M. "Using Chemical Crosslinking and Mass Spectrometry for Protein Model Validation and Fold Recognition." Thesis, University of Waterloo, 2006. http://hdl.handle.net/10012/1228.

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The 3D structures of proteins may provide important clues to their functions and roles in complex biological pathways. Traditional methods such as X-ray crystallography and NMR are not feasible for all proteins, while theoretical models are typically not validated by experimental data. This project investigates the use of chemical crosslinkers as an experimental means of validating these models. Five target proteins were successfully purified from yeast whole cell extract: Transketolase (TKL1), inorganic pyrophosphatase (IPP1), amidotransferase/cyclase HIS7, phosphoglycerate kinase (PGK
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Braun, Craig Ronald. "Structural Characterization of BCL-2 Family Protein Interactions Using Photoreactive Stapled Peptides and Mass Spectrometry." Thesis, Harvard University, 2012. http://dissertations.umi.com/gsas.harvard:10139.

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Recent improvements in mass spectrometry instrumentation have stimulated the fusion of this technology with protein crosslinking to advance the structural proteomics field. However, analysis of complex datasets from crosslinking experiments remains a bottleneck. The majority of crosslinking studies for structural characterization of protein- protein interactions have been conducted with reagents specific for discrete amino acids. While this approach simplifies data analysis, the requirement for specific functionalities to be present at the interaction interface limits resolution. Herein, we re
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DAI, ZHENYU. "PROTEIN CROSSLINKING BY THE MAILLARD REACTION WITH ASCORBIC ACID AND GLUCOSE." Case Western Reserve University School of Graduate Studies / OhioLINK, 2007. http://rave.ohiolink.edu/etdc/view?acc_num=case1184176746.

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Müller, Fränze [Verfasser], Juri [Akademischer Betreuer] Rappsilber, Juri [Gutachter] Rappsilber, and Markus [Gutachter] Ralser. "Quantitative crosslinking mass spectrometry : development and application to protein conformation changes / Fränze Müller ; Gutachter: Juri Rappsilber, Markus Ralser ; Betreuer: Juri Rappsilber." Berlin : Technische Universität Berlin, 2020. http://d-nb.info/1213348498/34.

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Giese, Sven Hans-Joachim [Verfasser], Juri [Akademischer Betreuer] Rappsilber, Matthias [Gutachter] Selbach, and Juri [Gutachter] Rappsilber. "Computational methods and machine learning for crosslinking mass spectrometry data analysis / Sven Hans-Joachim Giese ; Gutachter: Matthias Selbach, Juri Rappsilber ; Betreuer: Juri Rappsilber." Berlin : Technische Universität Berlin, 2021. http://d-nb.info/1238140718/34.

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Ferrari, Állan Jhonathan Ramos 1991. "Caracterização estrutural da Stanniocalcina-1 por Proteômica Estrutural." [s.n.], 2015. http://repositorio.unicamp.br/jspui/handle/REPOSIP/250217.

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Orientador: Fábio Cesar Gozzo<br>Dissertação (mestrado) - Universidade Estadual de Campinas, Instituto de Química<br>Made available in DSpace on 2018-08-27T10:34:23Z (GMT). No. of bitstreams: 1 Ferrari_AllanJhonathanRamos_M.pdf: 2074796 bytes, checksum: a9fd65df7da4d527a33e2ef562c91f73 (MD5) Previous issue date: 2015<br>Resumo: A Stanniocalcina-1 (STC1) é um hormônio glicoproteico que apresenta padrão de expressão diferencial destacado em diversas patologias, notadamente em neoplasias, mas seus aspectos funcionais e estruturais são pouco explorados até o momento. Nesse sentido, a STC1 foi es
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Garcia, del Rio Diego Fernando. "Studying protein complexes for assessing the function of ghost proteins (Ghost in the Cell)." Electronic Thesis or Diss., Université de Lille (2022-....), 2023. https://pepite-depot.univ-lille.fr/ToutIDP/EDBSL/2023/2023ULILS115.pdf.

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Le cancer de l'ovaire (OvCa) est le cancer le plus mortel parmi les cancers féminins. Il est souvent diagnostiqué tardivement ou mal diagnostiqué, ce qui le rend difficile à traiter. Les options de traitement incluent la chirurgie ou la chimiothérapie, toutefois la résistance à la chimiothérapie est un problème majeur. Il est donc urgent de trouver de nouvelles cibles et de développer de nouvelles stratégies pour surmonter cette résistance.Dans ce contexte le protéome fantôme est une source potentiellement riche de biomarqueurs. Le protéome fantôme, ou protéome alternatif, est composé de proté
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Gafken, Philip R. "Characterization of UV-crosslinked protein-nucleic acid interfaces by Maldi MS and ESI MS/MS." Thesis, 2000. http://hdl.handle.net/1957/32805.

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Jensen, Ole Norregaard. "Characterization of photochemically cross-linked protein-nucleic acid complexes by mass spectrometry." Thesis, 1994. http://hdl.handle.net/1957/35130.

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A novel protocol for the study of protein-nucleic acid interactions is presented and demonstrated to be feasible. The protocol combines photochemical crosslinking techniques and mass spectrometric methods into a new strategy for identifying protein domains or amino acid residues that are in close contact with nucleic acid in protein-nucleic acid complexes. Identifying nucleic acid binding domains in proteins provides a starting point for understanding structure-function relationships in protein-nucleic acid complexes. The protocol can be divided into three parts: 1) Cross linking of the protei
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Books on the topic "Crosslinking mass spectrometry"

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Jensen, Ole Nørregaard. Characterization of photochemically cross-linked protein-nucleic acid complexes by mass spectrometry. 1994.

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Book chapters on the topic "Crosslinking mass spectrometry"

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Urlaub, Henning, Eva Kühn-Hölsken, and Reinhard Lührmann. "Analyzing RNA-Protein Crosslinking Sites in Unlabeled Ribonucleoprotein Complexes by Mass Spectrometry." In Methods in Molecular Biology. Humana Press, 2008. http://dx.doi.org/10.1007/978-1-60327-475-3_16.

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Rafiei, Atefeh, and David C. Schriemer. "A Crosslinking Mass Spectrometry Protocol for the Structural Analysis of Microtubule-Associated Proteins." In Methods in Molecular Biology. Springer US, 2022. http://dx.doi.org/10.1007/978-1-0716-2124-0_14.

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Deterding, Leesa J., and Kenneth B. Tomer. "Chemical Surface Modification and Chemical Crosslinking Combined with Mass Spectrometry for Protein Tertiary Structural Information." In NATO Science for Peace and Security Series A: Chemistry and Biology. Springer Netherlands, 2008. http://dx.doi.org/10.1007/978-1-4020-8811-7_10.

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Calabrese, Antonio N. "Characterization of β-Barrel Outer Membrane Proteins and Their Interactions with Chaperones by Chemical-Crosslinking Mass Spectrometry." In Methods in Molecular Biology. Springer US, 2024. http://dx.doi.org/10.1007/978-1-0716-3734-0_16.

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Happonen, Lotta J. "Affinity-Purification Combined with Crosslinking Mass Spectrometry for Identification and Structural Modeling of Host–Pathogen Protein–Protein Complexes." In Methods in Molecular Biology. Springer US, 2023. http://dx.doi.org/10.1007/978-1-0716-3243-7_12.

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Otun, Sarah, Tshele Mokhantso, and Ikechukwu Achilonu. "Advances in Structural Proteomics using Mass Spectrometry." In Applications of Modern Mass Spectrometry volume 2. BENTHAM SCIENCE PUBLISHERS, 2024. http://dx.doi.org/10.2174/9789815050059124020007.

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Structural proteomic techniques have recently evolved because of advances in mass spectrometry (MS). Several MS techniques, such as, Hydrogen-deuterium exchange, oxidative footprinting or radical probe mass spectrometry, chemical crosslinking, affinity purification, and ion mobility separation, can now be used to analyse protein interaction networks, conformational changes, protein structures, and other downstream applications. This article examines proteomic MS techniques' progression from convectional to advanced techniques, tandem MS techniques, MS of multiprotein complexes, and emerging MS
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Hiratsuka, Takuya, and Tatsuaki Tsuruyama. "Mass Spectrometry Analysis Using Formalin-Fixed Paraffin-Embedded Pathological Samples." In Mass Spectrometry - Recent Advances and Key Aspects [Working Title]. IntechOpen, 2023. http://dx.doi.org/10.5772/intechopen.1002728.

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Biomarker discovery using mass spectrometry (MS) plays a significant role in clinical medical research. However, proteomic analysis of formalin-fixed paraffin-embedded (FFPE) specimens using MS has been challenging because of the reduced solubility caused by fixation, leading to crosslinking reactions among amino acid side chains in proteins. This review presents the techniques employed for omics analysis of FFPE specimens to identify disease-specific biomarkers.
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Conference papers on the topic "Crosslinking mass spectrometry"

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Bykov, Alexey, Galina Demidenko, Linda Nikoshvili, and Elena Bakhvalova. "INFLUENCE OF THE NATURE OF AROMATIC POLYMER AS A PT PARTICLE STABILIZER ON ITS ACTIVITY AND SELECTIVITY IN THE LIQUID-PHASE HYDROGENATION OF AROMATIC AND POLYAROMATIC SUBSTRATES." In 24th SGEM International Multidisciplinary Scientific GeoConference 24. STEF92 Technology, 2024. https://doi.org/10.5593/sgem2024/4.1/s17.16.

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A series of platinum catalytic systems stabilized in aromatic polymers were obtained in this work. Commercially available styrene-divinylbenzene (MN100) and polymers synthesized by one-stage crosslinking by the Friedel-Crafts reaction from benzene, naphthalene, and an equimolar benzene-naphthalene mixture were used as polymers. The obtained systems were tested in liquid-phase hydrogenation reactions of benzene, toluene, and benzene-toluene mixture, as well as anthracene in a dodecane medium. The reaction products were studied using GC-MS. Polymers and catalytic systems were studied using diffu
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Reports on the topic "Crosslinking mass spectrometry"

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Haskins, William E., Michael D. Leavell, Pamela Lane, et al. Chemical crosslinking and mass spectrometry studies of the structure and dynamics of membrane proteins and receptors. Office of Scientific and Technical Information (OSTI), 2005. http://dx.doi.org/10.2172/922763.

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