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1

Buckle, Malcolm, Johannes Geiselmann, Annie Kolb, and Henri Buc. "Protein-DNA cross-linking at thelacpromoter." Nucleic Acids Research 19, no. 4 (1991): 833–40. http://dx.doi.org/10.1093/nar/19.4.833.

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2

Romano, Keith P., Adam G. Newman, Rami W. Zahran, and Julie T. Millard. "DNA Interstrand Cross-Linking by Epichlorohydrin." Chemical Research in Toxicology 20, no. 5 (2007): 832–38. http://dx.doi.org/10.1021/tx700066h.

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3

CHU, B. C. F., and LESLIE E. ORGEL. "A Simple Procedure for Cross-Linking Complementary Oligonucleotides." DNA and Cell Biology 9, no. 1 (1990): 71–76. http://dx.doi.org/10.1089/dna.1990.9.71.

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4

Sun, Guangxing, Christopher J. Fecko, Robert B. Nicewonger, Watt W. Webb, and Tadhg P. Begley. "DNA−Protein Cross-Linking: Model Systems for Pyrimidine−Aromatic Amino Acid Cross-Linking." Organic Letters 8, no. 4 (2006): 681–83. http://dx.doi.org/10.1021/ol052876m.

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5

Ji, Shaofei, Hongzhao Shao, Qiyuan Han, Christopher L. Seiler, and Natalia Y. Tretyakova. "Reversible DNA-Protein Cross-Linking at Epigenetic DNA Marks." Angewandte Chemie International Edition 56, no. 45 (2017): 14130–34. http://dx.doi.org/10.1002/anie.201708286.

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6

Ji, Shaofei, Hongzhao Shao, Qiyuan Han, Christopher L. Seiler, and Natalia Y. Tretyakova. "Reversible DNA-Protein Cross-Linking at Epigenetic DNA Marks." Angewandte Chemie 129, no. 45 (2017): 14318–22. http://dx.doi.org/10.1002/ange.201708286.

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7

Rajendran, Arivazhagan, Chinnian J. Magesh, and Paramasivan T. Perumal. "DNA–DNA cross-linking mediated by bifunctional [SalenAlIII]+ complex." Biochimica et Biophysica Acta (BBA) - General Subjects 1780, no. 2 (2008): 282–88. http://dx.doi.org/10.1016/j.bbagen.2007.11.012.

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8

Teng, Sally P., Sarah A. Woodson, and Donald M. Crothers. "DNA sequence specificity of mitomycin cross-linking." Biochemistry 28, no. 9 (1989): 3901–7. http://dx.doi.org/10.1021/bi00435a041.

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9

Rajski, Scott R., and Robert M. Williams. "DNA Cross-Linking Agents as Antitumor Drugs." Chemical Reviews 98, no. 8 (1998): 2723–96. http://dx.doi.org/10.1021/cr9800199.

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10

Copeland, Kimberly D., Alexis M. K. Lueras, Eric D. A. Stemp, and Jacqueline K. Barton. "DNA Cross-Linking with Metallointercalator−Peptide Conjugates†." Biochemistry 41, no. 42 (2002): 12785–97. http://dx.doi.org/10.1021/bi020407b.

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11

Pruss, Dmitry, and Sergey G. Bavykin. "Chromatin Studies by DNA–Protein Cross-Linking." Methods 12, no. 1 (1997): 36–47. http://dx.doi.org/10.1006/meth.1997.0445.

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12

Michaelson-Richie, Erin D., Rachel L. Loeber, Simona G. Codreanu, et al. "DNA−Protein Cross-Linking by 1,2,3,4-Diepoxybutane." Journal of Proteome Research 9, no. 9 (2010): 4356–67. http://dx.doi.org/10.1021/pr1000835.

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13

Pusey, L. J. E. "DNA-protein cross-linking by cytotoxic drugs." European Journal of Cancer and Clinical Oncology 23, no. 11 (1987): 1792. http://dx.doi.org/10.1016/0277-5379(87)90694-8.

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14

Vogel, Benjamin, Anna Löschberger, Markus Sauer, and Robert Hock. "Cross-linking of DNA through HMGA1 suggests a DNA scaffold." Nucleic Acids Research 39, no. 16 (2011): 7124–33. http://dx.doi.org/10.1093/nar/gkr396.

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15

MULLEN, MARY A., HONGBING WANG, KENT WILCOX, and TIM HERMAN. "Characterization of a Max:DNA Complex by Cross-Linking to Photoactive Oligonucleotides." DNA and Cell Biology 13, no. 5 (1994): 521–30. http://dx.doi.org/10.1089/dna.1994.13.521.

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16

Kim, H. Y., F. R. Stermitz, J. K. K. Li, and R. A. Coulombe. "Comparative DNA Cross-linking by Activated Pyrrolizidine Alkaloids." Food and Chemical Toxicology 37, no. 6 (1999): 619–25. http://dx.doi.org/10.1016/s0278-6915(99)00025-3.

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17

Macfie, Andrea, Elizabeth Hagan, and Anatoly Zhitkovich. "Mechanism of DNA−Protein Cross-Linking by Chromium." Chemical Research in Toxicology 23, no. 2 (2010): 341–47. http://dx.doi.org/10.1021/tx9003402.

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18

Hartley, J. A., C. C. O’Hare, and J. Baumgart. "DNA alkylation and interstrand cross-linking by treosulfan." British Journal of Cancer 79, no. 2 (1998): 264–66. http://dx.doi.org/10.1038/sj.bjc.6690043.

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19

Tagawa, Miho, Koh-ichiroh Shohda, Kenzo Fujimoto, and Akira Suyama. "Stabilization of DNA nanostructures by photo-cross-linking." Soft Matter 7, no. 22 (2011): 10931. http://dx.doi.org/10.1039/c1sm06303k.

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20

Wang, Huan, Manvinder S Wahi, and Steven E Rokita. "Immortalizing a Transient Electrophile for DNA Cross-Linking." Angewandte Chemie 120, no. 7 (2008): 1311–13. http://dx.doi.org/10.1002/ange.200704137.

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21

Wang, Huan, Manvinder S Wahi, and Steven E Rokita. "Immortalizing a Transient Electrophile for DNA Cross-Linking." Angewandte Chemie International Edition 47, no. 7 (2008): 1291–93. http://dx.doi.org/10.1002/anie.200704137.

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22

Zeng, Qingping, and Steven E. Rokita. "Tandem Quinone Methide Generation for Cross-Linking DNA." Journal of Organic Chemistry 61, no. 26 (1996): 9080–81. http://dx.doi.org/10.1021/jo961864z.

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23

Tepe, Jetze J., and Robert M. Williams. "DNA Cross-Linking by a Phototriggered Dehydromonocrotaline Progenitor." Journal of the American Chemical Society 121, no. 13 (1999): 2951–55. http://dx.doi.org/10.1021/ja983894k.

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24

Millard, J. T., J. L. Katz, J. Goda, et al. "DNA interstrand cross-linking by a mycotoxic diepoxide." Biochimie 86, no. 6 (2004): 419–23. http://dx.doi.org/10.1016/j.biochi.2004.03.010.

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25

Brulikova, L., J. Hlavac, and P. Hradil. "DNA Interstrand Cross-Linking Agents and their Chemotherapeutic Potential." Current Medicinal Chemistry 19, no. 3 (2012): 364–85. http://dx.doi.org/10.2174/092986712803414295.

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26

Wedrychowski, A., W. S. Ward, W. N. Schmidt, and L. S. Hnilica. "Chromium-induced cross-linking of nuclear proteins and DNA." Journal of Biological Chemistry 260, no. 11 (1985): 7150–55. http://dx.doi.org/10.1016/s0021-9258(18)88901-3.

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27

Leng, Fenfei, David Graves, and Jonathan B. Chaires. "Chemical cross-linking of ethidium to DNA by glyoxal." Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression 1442, no. 1 (1998): 71–81. http://dx.doi.org/10.1016/s0167-4781(98)00122-5.

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28

Carrette, Lieselot L. G., Takashi Morii, and Annemieke Madder. "Toxicity Inspired Cross-Linking for Probing DNA–Peptide Interactions." Bioconjugate Chemistry 24, no. 12 (2013): 2008–14. http://dx.doi.org/10.1021/bc400327q.

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29

Fujimoto, Kenzo, Shinobu Sasago, Junichi Mihara, and Shigetaka Nakamura. "DNA Photo-cross-linking Using Pyranocarbazole and Visible Light." Organic Letters 20, no. 10 (2018): 2802–5. http://dx.doi.org/10.1021/acs.orglett.8b00593.

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30

Rajski, Scott R., and Robert M. Williams. "ChemInform Abstract: DNA Cross-Linking Agents as Antitumor Drugs." ChemInform 30, no. 12 (2010): no. http://dx.doi.org/10.1002/chin.199912339.

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31

Verga, Daniela, Florian Hamon, Florent Poyer, Sophie Bombard, and Marie-Paule Teulade-Fichou. "Photo-Cross-Linking Probes for Trapping G-Quadruplex DNA." Angewandte Chemie International Edition 53, no. 4 (2013): 994–98. http://dx.doi.org/10.1002/anie.201307413.

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32

Verga, Daniela, Florian Hamon, Florent Poyer, Sophie Bombard, and Marie-Paule Teulade-Fichou. "Photo-Cross-Linking Probes for Trapping G-Quadruplex DNA." Angewandte Chemie 126, no. 4 (2013): 1012–16. http://dx.doi.org/10.1002/ange.201307413.

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33

Op de Beeck, Marieke, and Annemieke Madder. "Sequence Specific DNA Cross-Linking Triggered by Visible Light." Journal of the American Chemical Society 134, no. 26 (2012): 10737–40. http://dx.doi.org/10.1021/ja301901p.

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34

Imoto, Shuhei, Tomoko Chikuni, Hisao Kansui, Takehisa Kunieda, and Fumi Nagatsugi. "Fast DNA Interstrand Cross-Linking Reaction by 6-Vinylpurine." Nucleosides, Nucleotides and Nucleic Acids 31, no. 10 (2012): 752–62. http://dx.doi.org/10.1080/15257770.2012.726756.

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35

Rusling, David A., Iris S. Nandhakumar, Tom Brown, and Keith R. Fox. "Triplex-directed covalent cross-linking of a DNA nanostructure." Chemical Communications 48, no. 77 (2012): 9592. http://dx.doi.org/10.1039/c2cc35407a.

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36

Schüler, Thomas, Alla Nykytenko, Andrea Csaki, Robert Möller, Wolfgang Fritzsche, and Jürgen Popp. "UV cross-linking of unmodified DNA on glass surfaces." Analytical and Bioanalytical Chemistry 395, no. 4 (2009): 1097–105. http://dx.doi.org/10.1007/s00216-009-3045-9.

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37

Huang, Huifang, Jinsuk Woo, Stephen C. Alley, and Paul B. Hopkins. "DNA-DNA interstrand cross-linking by cis-diamminedichloroplatinum(II): N7(dG)-N7(dG) cross-linking at 5′-d(GC) in synthetic oligonucleotides." Bioorganic & Medicinal Chemistry 3, no. 6 (1995): 659–69. http://dx.doi.org/10.1016/0968-0896(95)00059-p.

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38

Paz, Manuel M., and Paul B. Hopkins. "DNA−DNA Interstrand Cross-Linking by FR66979: Intermediates in the Activation Cascade." Journal of the American Chemical Society 119, no. 26 (1997): 5999–6005. http://dx.doi.org/10.1021/ja970350u.

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39

Gottlieb, Geoffrey S., and Michael A. Fennewald. "UV photoaffinity labeling of Tn3 transposase–DNA complexes: identification of DNA binding domains." Canadian Journal of Microbiology 42, no. 1 (1996): 46–59. http://dx.doi.org/10.1139/m96-007.

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Abstract:
The prokaryotic transposon Tn3 requires the transposase protein, as well as the cis-acting terminal inverted repeats (IRs), for transposition. The first step in the transposition process requires transposase binding to the IRs, as well as target site selection for element insertion. The primary aim of this study is to define the relationship between the structure of Tru3 transposase and its DNA binding functions. We have defined, by UV cross-linking, two broad regions of transposase that interact with DNA: a 70-kDa N-terminal domain and a 30-kDa C-terminal domain. The 70-kDa N-terminal domain
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40

Mitrasinovic, Petar M. "Cross-Linking between Thymine and Indolyl Radical: Possible Mechanisms for Cross-Linking of DNA and Tryptophan-Containing Peptides." Bioconjugate Chemistry 16, no. 3 (2005): 588–97. http://dx.doi.org/10.1021/bc0500490.

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41

Wagner, J. G., T. W. Petry, and R. A. Roth. "Characterization of monocrotaline pyrrole-induced DNA cross-linking in pulmonary artery endothelium." American Journal of Physiology-Lung Cellular and Molecular Physiology 264, no. 5 (1993): L517—L522. http://dx.doi.org/10.1152/ajplung.1993.264.5.l517.

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Abstract:
Monocrotaline pyrrole (MCTP) is a putative, toxic metabolite of the pyrrolizidine alkaloid, monocrotaline (MCT). When given intravenously to rats, it produces a delayed and progressive injury to the vasculature of the lungs that results in pulmonary hypertension and right heart hypertrophy. Dysfunctional endothelium and vascular leak are early signs of overt injury to the lung. When administered to endothelial cell cultures, MCTP causes cell enlargement, delayed and progressive cytotoxicity, and inhibition of proliferation in surviving cells. MCTP is a bifunctional alkylating agent which binds
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42

Sigurdsson, Snorri Th, and Paul B. Hopkins. "Synthesis and reactions with DNA of a family of DNA-DNA afinity cross-linking agents." Tetrahedron 50, no. 42 (1994): 12065–84. http://dx.doi.org/10.1016/s0040-4020(01)89560-0.

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43

Wang, Ping, Yang Song, Lixia Zhang, Hanping He, and Xiang Zhou. "Quinone Methide Derivatives: Important Intermediates to DNA Alkylating and DNA Cross-linking Actions." Current Medicinal Chemistry 12, no. 24 (2005): 2893–913. http://dx.doi.org/10.2174/092986705774454724.

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44

Park, Soobong, Christopher Anderson, Rachel Loeber, Mahadevan Seetharaman, Roger Jones, and Natalia Tretyakova. "Interstrand and Intrastrand DNA−DNA Cross-Linking by 1,2,3,4-Diepoxybutane: Role of Stereochemistry." Journal of the American Chemical Society 127, no. 41 (2005): 14355–65. http://dx.doi.org/10.1021/ja051979x.

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45

Lando, Dmitri Y., Alexander S. Fridman, Alexander G. Kabak, and Afanasii A. Akhrem. "Melting of Cross-Linked DNA: II. Influence of Interstrand Linking on DNA Stability." Journal of Biomolecular Structure and Dynamics 15, no. 1 (1997): 141–50. http://dx.doi.org/10.1080/07391102.1997.10508953.

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46

Ando, Hideko, and Masayoshi Mishina. "Efficient mutagenesis of zebrafish by a DNA cross-linking agent." Neuroscience Research 31 (January 1998): S149. http://dx.doi.org/10.1016/s0168-0102(98)82067-1.

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47

Woo, Jinsuk, Snorri T. Sigurdsson, and Paul B. Hopkins. "DNA interstrand cross-linking by reductively activated FR900482 and FR66979." Journal of the American Chemical Society 115, no. 3 (1993): 1199–200. http://dx.doi.org/10.1021/ja00056a084.

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48

Millard, Julie T., Rebecca J. Spencer, and Paul B. Hopkins. "Effect of Nucleosome Structure on DNA Interstrand Cross-Linking Reactions†." Biochemistry 37, no. 15 (1998): 5211–19. http://dx.doi.org/10.1021/bi972862r.

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49

Véliz Montes, Cinthya, Henry Memczak, Ellen Gyssels, Tomás Torres, Annemieke Madder, and Rudolf J. Schneider. "Photoinduced Cross-Linking of Short Furan-Modified DNA on Surfaces." Langmuir 33, no. 5 (2017): 1197–201. http://dx.doi.org/10.1021/acs.langmuir.6b03855.

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50

Ando, Hideki, and Masayoshi Mishina. "Efficient mutagenesis of zebrafish by a DNA cross-linking agent." Neuroscience Letters 244, no. 2 (1998): 81–84. http://dx.doi.org/10.1016/s0304-3940(98)00132-3.

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