Academic literature on the topic 'Hoogsteen base pairing'

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Journal articles on the topic "Hoogsteen base pairing"

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LEONTIS, NEOCLES B., and ERIC WESTHOF. "Conserved geometrical base-pairing patterns in RNA." Quarterly Reviews of Biophysics 31, no. 4 (1998): 399–455. http://dx.doi.org/10.1017/s0033583599003479.

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1. INTRODUCTION 3992. DEFINITIONS 4013. CIS BASEPAIRS 4103.1 Cis Watson–Crick/Watson–Crick 4103.2 Wobble pairings 4113.3 Cis Watson–Crick/Hoogsteen pairings 4163.4 Bifurcated pairings 4173.5 Cis open and water-inserted 4214. TRANS BASEPAIRS 4234.1 Trans Watson–Crick/Watson–Crick 4234.2 Trans wobble pairs 4244.3 Trans Watson–Crick/Hoogsteen pairs 4244.4 Trans Hoogsteen/Hoogsteen pairs 4304.5 Trans bifurcated pairings 4325. SHALLOW-GROOVE PAIRINGS 4325.1 Hoogsteen/Shallow-groove pairs 4335.2 Watson–Crick/Shallow-groove pairings 4385.3 Shallow-groove/Shallow-groove pairings 4406. SIDE-BY-SIDE BAS
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Cheng, Yuen Kit, and B. Montgomery Pettitt. "Hoogsteen versus reversed-Hoogsteen base pairing: DNA triple helixes." Journal of the American Chemical Society 114, no. 12 (1992): 4465–74. http://dx.doi.org/10.1021/ja00038a004.

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Wang, Jimin. "Hoogsteen base-pairing in DNA replication?" Nature 437, no. 7057 (2005): E6—E7. http://dx.doi.org/10.1038/nature04199.

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Aggarwal, Aneel, Deepak Nair, Robert Johnson, Louise Prakash, and Satya Prakash. "Hoogsteen base-pairing in DNA replication? (reply)." Nature 437, no. 7057 (2005): E7. http://dx.doi.org/10.1038/nature04200.

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Weil, Jonathan, Tongpil Min, Cheng Yang, et al. "Stabilization of the i-motif by intramolecular adenine–adenine–thymine base triple in the structure of d(ACCCT)." Acta Crystallographica Section D Biological Crystallography 55, no. 2 (1999): 422–29. http://dx.doi.org/10.1107/s0907444998012529.

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The crystal structure of d(ACCCT), solved by molecular replacement, shows a four-stranded i-motif conformation, where two parallel duplexes intercalate with one another in opposite orientations. Each duplex is stabilized by hemi-protonated C–C+ base pairing between parallel strands, and a string of water molecules bridge the cytosine N4 atoms to phosphate O atoms. This structure of d(ACCCT) shows examples of reversed Hoogsteen and Watson–Crick base pairing in both intermolecular and intramolecular manners to stabilize the tetraplex. Noticeably, the four-stranded complex is further stabilized a
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Nair, Deepak T., Robert E. Johnson, Satya Prakash, Louise Prakash та Aneel K. Aggarwal. "Replication by human DNA polymerase-ι occurs by Hoogsteen base-pairing". Nature 430, № 6997 (2004): 377–80. http://dx.doi.org/10.1038/nature02692.

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Raghunathan, G., H. Todd Miles, and V. Sasisekharan. "Parallel nucleic acid helices with hoogsteen base pairing: Symmetry and structure." Biopolymers 34, no. 12 (1994): 1573–81. http://dx.doi.org/10.1002/bip.360341202.

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Abrescia, N. G. A., A. Thompson, T. Huynh-Dinh, and J. A. Subirana. "Crystal structure of an antiparallel DNA fragment with Hoogsteen base pairing." Proceedings of the National Academy of Sciences 99, no. 5 (2002): 2806–11. http://dx.doi.org/10.1073/pnas.052675499.

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XIE, Jun. "PNA(T).DNA(AT) triplexes with Hoogsteen base pairing are more favorable." Chinese Science Bulletin 48, no. 21 (2003): 2340. http://dx.doi.org/10.1360/03wc0200.

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Lustig, Arthur J. "Hoogsteen G-G base pairing is dispensable for telomere healing in yeast." Nucleic Acids Research 20, no. 12 (1992): 3021–28. http://dx.doi.org/10.1093/nar/20.12.3021.

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Dissertations / Theses on the topic "Hoogsteen base pairing"

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Conroy, Daniel William. "Structural Studies of Biomolecules by Dynamic Nuclear Polarization Solid-State NMR Spectroscopy." The Ohio State University, 2019. http://rave.ohiolink.edu/etdc/view?acc_num=osu1555428362333615.

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Lawrence, Candace Michelle. "Utilization of nucleobase pairing to develop supramolecular polymers, electron transfer systems, and interaction with biological molecules." Thesis, 2010. http://hdl.handle.net/2152/ETD-UT-2010-05-1148.

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Hydrogen bonding is seen extensively in Nature. It is manifest in DNA/RNA nucleic acid (nucleobase) pairing, the defining feature of the double helix, as well as in secondary structures in protein folding such as hairpin loops. This importance, thus coupled with the aesthetic appeal of nucleobase hydrogen-bonding interactions, has inspired us to design and synthesize new hydrogen-bonded assemblies that make use of Watson-Crick and Hoogsteen interactions. Currently, novel supramolecular architectures are being developed for the formation of supramolecular polymers via Watson-Crick hydrogen b
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Book chapters on the topic "Hoogsteen base pairing"

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Sharma, Purshotam, Harjinder Singh, and Abhijit Mitra. "Noncanonical Base Pairing in RNA: Topological and NBO Analysis of Hoogsteen Edge - Sugar Edge Interactions." In Computational Science – ICCS 2008. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/978-3-540-69387-1_42.

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