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Journal articles on the topic 'Hoogsteen base pairing'

Author: Grafiati

Published: 4 June 2021

Last updated: 11 February 2022

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1

LEONTIS, NEOCLES B., and ERIC WESTHOF. "Conserved geometrical base-pairing patterns in RNA." Quarterly Reviews of Biophysics 31, no. 4 (1998): 399–455. http://dx.doi.org/10.1017/s0033583599003479.

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1. INTRODUCTION 3992. DEFINITIONS 4013. CIS BASEPAIRS 4103.1 Cis Watson–Crick/Watson–Crick 4103.2 Wobble pairings 4113.3 Cis Watson–Crick/Hoogsteen pairings 4163.4 Bifurcated pairings 4173.5 Cis open and water-inserted 4214. TRANS BASEPAIRS 4234.1 Trans Watson–Crick/Watson–Crick 4234.2 Trans wobble pairs 4244.3 Trans Watson–Crick/Hoogsteen pairs 4244.4 Trans Hoogsteen/Hoogsteen pairs 4304.5 Trans bifurcated pairings 4325. SHALLOW-GROOVE PAIRINGS 4325.1 Hoogsteen/Shallow-groove pairs 4335.2 Watson–Crick/Shallow-groove pairings 4385.3 Shallow-groove/Shallow-groove pairings 4406. SIDE-BY-SIDE BAS

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2

Cheng, Yuen Kit, and B. Montgomery Pettitt. "Hoogsteen versus reversed-Hoogsteen base pairing: DNA triple helixes." Journal of the American Chemical Society 114, no. 12 (1992): 4465–74. http://dx.doi.org/10.1021/ja00038a004.

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3

Wang, Jimin. "Hoogsteen base-pairing in DNA replication?" Nature 437, no. 7057 (2005): E6—E7. http://dx.doi.org/10.1038/nature04199.

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4

Aggarwal, Aneel, Deepak Nair, Robert Johnson, Louise Prakash, and Satya Prakash. "Hoogsteen base-pairing in DNA replication? (reply)." Nature 437, no. 7057 (2005): E7. http://dx.doi.org/10.1038/nature04200.

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5

Weil, Jonathan, Tongpil Min, Cheng Yang, et al. "Stabilization of the i-motif by intramolecular adenine–adenine–thymine base triple in the structure of d(ACCCT)." Acta Crystallographica Section D Biological Crystallography 55, no. 2 (1999): 422–29. http://dx.doi.org/10.1107/s0907444998012529.

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The crystal structure of d(ACCCT), solved by molecular replacement, shows a four-stranded i-motif conformation, where two parallel duplexes intercalate with one another in opposite orientations. Each duplex is stabilized by hemi-protonated C–C+ base pairing between parallel strands, and a string of water molecules bridge the cytosine N4 atoms to phosphate O atoms. This structure of d(ACCCT) shows examples of reversed Hoogsteen and Watson–Crick base pairing in both intermolecular and intramolecular manners to stabilize the tetraplex. Noticeably, the four-stranded complex is further stabilized a

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6

Nair, Deepak T., Robert E. Johnson, Satya Prakash, Louise Prakash та Aneel K. Aggarwal. "Replication by human DNA polymerase-ι occurs by Hoogsteen base-pairing". Nature 430, № 6997 (2004): 377–80. http://dx.doi.org/10.1038/nature02692.

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7

Raghunathan, G., H. Todd Miles, and V. Sasisekharan. "Parallel nucleic acid helices with hoogsteen base pairing: Symmetry and structure." Biopolymers 34, no. 12 (1994): 1573–81. http://dx.doi.org/10.1002/bip.360341202.

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8

Abrescia, N. G. A., A. Thompson, T. Huynh-Dinh, and J. A. Subirana. "Crystal structure of an antiparallel DNA fragment with Hoogsteen base pairing." Proceedings of the National Academy of Sciences 99, no. 5 (2002): 2806–11. http://dx.doi.org/10.1073/pnas.052675499.

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9

XIE, Jun. "PNA(T).DNA(AT) triplexes with Hoogsteen base pairing are more favorable." Chinese Science Bulletin 48, no. 21 (2003): 2340. http://dx.doi.org/10.1360/03wc0200.

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10

Lustig, Arthur J. "Hoogsteen G-G base pairing is dispensable for telomere healing in yeast." Nucleic Acids Research 20, no. 12 (1992): 3021–28. http://dx.doi.org/10.1093/nar/20.12.3021.

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11

Fairlamb, Max S., Amy M. Whitaker, and Bret D. Freudenthal. "Apurinic/apyrimidinic (AP) endonuclease 1 processing of AP sites with 5′ mismatches." Acta Crystallographica Section D Structural Biology 74, no. 8 (2018): 760–68. http://dx.doi.org/10.1107/s2059798318003340.

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Despite the DNA duplex being central to biological functions, many intricacies of this molecule, including the dynamic nature of mismatched base pairing, are still unknown. The unique conformations adopted by DNA mismatches can provide insight into the forces at play between nucleotides. Moreover, DNA-binding proteins apply their own individualized steric and electrochemical influences on the nucleotides that they interact with, further altering base-pairing conformations. Here, seven X-ray crystallographic structures of the human nuclease apurinic/apyrimidinic (AP) endonuclease 1 (APE1) in co

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12

Liu, Keliang, H. Todd Miles, Joe Frazier, and V. Sasisekharan. "A novel DNA duplex. A parallel-stranded DNA helix with Hoogsteen base pairing." Biochemistry 32, no. 44 (1993): 11802–9. http://dx.doi.org/10.1021/bi00095a008.

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13

Hintze, Bradley, Huiqing Zhou, Hashim Al-Hashimi, David Richardson, and Jane Richardson. "Hidden Hoogsteens in the Data." Acta Crystallographica Section A Foundations and Advances 70, a1 (2014): C1508. http://dx.doi.org/10.1107/s2053273314084915.

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Although extremely rare in the crystallographic database, Hoogsteen (HG) base pairs have been modeled, especially at duplex termini, protein-DNA interfaces, damaged DNA and DNA mismatches. Formation of HG base pairs in duplex DNA requires a 180 degree rotation along the glycosidic bond of the purine relative to the canonical Watson-Crick (WC) base-pair. In a recent survey of the PDB we identified 75 HS base pairs in 2,910 x-ray derived models. Recent evidence suggests that the prevalence of HG base pairs in nature to be greater than previously thought. Due to electron density density ambiguity

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14

Koag, Myong-Chul, Hunmin Jung, and Seongmin Lee. "Mutagenesis mechanism of the major oxidative adenine lesion 7,8-dihydro-8-oxoadenine." Nucleic Acids Research 48, no. 9 (2020): 5119–34. http://dx.doi.org/10.1093/nar/gkaa193.

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Abstract Reactive oxygen species generate the genotoxic 8-oxoguanine (oxoG) and 8-oxoadenine (oxoA) as major oxidative lesions. The mutagenicity of oxoG is attributed to the lesion's ability to evade the geometric discrimination of DNA polymerases by adopting Hoogsteen base pairing with adenine in a Watson–Crick-like geometry. Compared with oxoG, the mutagenesis mechanism of oxoA, which preferentially induces A-to-C mutations, is poorly understood. In the absence of protein contacts, oxoA:G forms a wobble conformation, the formation of which is suppressed in the catalytic site of most DNA poly

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15

Wolfle, William T., Robert E. Johnson, Irina G. Minko, R. Stephen Lloyd, Satya Prakash та Louise Prakash. "Replication past a trans-4-Hydroxynonenal Minor-Groove Adduct by the Sequential Action of Human DNA Polymerases ι and κ". Molecular and Cellular Biology 26, № 1 (2006): 381–86. http://dx.doi.org/10.1128/mcb.26.1.381-386.2006.

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ABSTRACT The X-ray crystal structure of human DNA polymerase ι (Polι) has shown that it differs from all known Pols in its dependence upon Hoogsteen base pairing for synthesizing DNA. Hoogsteen base pairing provides an elegant mechanism for synthesizing DNA opposite minor-groove adducts that present a severe block to synthesis by replicative DNA polymerases. Germane to this problem, a variety of DNA adducts form at the N2 minor-groove position of guanine. Previously, we have shown that proficient and error-free replication through the γ-HOPdG (γ-hydroxy-1,N 2-propano-2′-deoxyguanosine) adduct,

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16

Liao, Xianjiu, Jianbin Pan, Xiaolu Zhang, and Qianli Tang. "Sensitive Detection of Argonaute2 by Triple-Helix Molecular Switch Reaction and Pyrene Excimer Switching." Australian Journal of Chemistry 73, no. 11 (2020): 1074. http://dx.doi.org/10.1071/ch19485.

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RNA interference (RNAi) is a powerful tool for silencing target genes in a variety of cells and has great therapeutic potential. It is triggered by small interfering RNAs (siRNAs) and by an RNA-binding protein (argonaute, Ago). In this manuscript, we designed a simple fluorescence sensor strategy for sensitive detection of argonaute2 (Ago2) based on the base pairing principle of Watson–Crick and Hoogsteen and the pyrene excimer switch. The sensing platform has extremely high sensitivity and a detection limit of 0.1nM. It can be used to detect endogenous Ago2 in cancer cells and has great poten

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17

Seela, Frank, Thomas Wenzel, and Harald Debelak. "Hoogsteen-Duplex DNA: Synthesis and Base Pairing of Oligodeoxynucleotides Containing 1-Deaza-2'-deoxyadenosine." Nucleosides, Nucleotides and Nucleic Acids 14, no. 3 (1995): 957–60. http://dx.doi.org/10.1080/15257779508012510.

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18

Vreede, Jocelyne, Peter G. Bolhuis, and David W. H. Swenson. "Predicting the Mechanism and Kinetics of the Watson-Crick to Hoogsteen Base Pairing Transition." Biophysical Journal 110, no. 3 (2016): 563a—564a. http://dx.doi.org/10.1016/j.bpj.2015.11.3014.

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19

Ghosal, Gargi, and K. Muniyappa. "Hoogsteen base-pairing revisited: Resolving a role in normal biological processes and human diseases." Biochemical and Biophysical Research Communications 343, no. 1 (2006): 1–7. http://dx.doi.org/10.1016/j.bbrc.2006.02.148.

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20

Ray, Dhiman, and Ioan Andricioaei. "Free Energy Landscape and Conformational Kinetics of Hoogsteen Base Pairing in DNA vs. RNA." Biophysical Journal 119, no. 8 (2020): 1568–79. http://dx.doi.org/10.1016/j.bpj.2020.08.031.

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21

Seela, Frank, and Thomas Wenzel. "Hoogsteen-Duplex DNA: Synthesis and base pairing of oligonucleotides containing 1-deaza-2?-deoxyadenosine." Helvetica Chimica Acta 77, no. 6 (1994): 1485–99. http://dx.doi.org/10.1002/hlca.19940770604.

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22

SIRISH, MALLENA, and BHASKAR G. MAIYA. "A Porphyrin-Anthracene Supramolecular System Assembled via Complementary Nucleic Acid Base Pairing." Journal of Porphyrins and Phthalocyanines 02, no. 04 (1998): 327–35. http://dx.doi.org/10.1002/(sici)1099-1409(199807/10)2:4/5<327::aid-jpp78>3.0.co;2-1.

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Covalently linked porphyrin–adenine (meso-5(4-(9-(2-oxyethyl)adenine)phenyl)-10,15,20-tritolylporphyrin, 1) and anthracene–thymine (1-(9-methylanthracene)thymine, 2) conjugates have been synthesized and fully characterized by elemental analysis, FAB mass, UV-vis, 1 H NMR, fluorescence and cyclic voltammetric methods. Detailed 1 H NMR studies reveal that 1 and 2 self-assemble in CDCl 3 solutions at 293 ± 3 K to form a two-point hydrogen-bonded, bichromophoric, supramolecular system 3 with a binding constant of 47 ± 5 M−1 and that both Hoogsteen- and Watson–Crick-type A–T assemblies exist in sol

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23

Kondhare, Dasharath, Simone Budow-Busse, Constantin Daniliuc, and Frank Seela. "7-Iodo-5-aza-7-deazaguanine ribonucleoside: crystal structure, physical properties, base-pair stability and functionalization." Acta Crystallographica Section C Structural Chemistry 76, no. 5 (2020): 513–23. http://dx.doi.org/10.1107/s2053229620004684.

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The positional change of nitrogen-7 of the RNA constituent guanosine to the bridgehead position-5 leads to the base-modified nucleoside 5-aza-7-deazaguanosine. Contrary to guanosine, this molecule cannot form Hoogsteen base pairs and the Watson–Crick proton donor site N3—H becomes a proton-acceptor site. This causes changes in nucleobase recognition in nucleic acids and has been used to construct stable `all-purine' DNA and DNA with silver-mediated base pairs. The present work reports the single-crystal X-ray structure of 7-iodo-5-aza-7-deazaguanosine, C10H12IN5O5 (1). The iodinated nucleoside

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24

Johnson, R. E., L. Prakash, and S. Prakash. "Biochemical evidence for the requirement of Hoogsteen base pairing for replication by human DNA polymerase." Proceedings of the National Academy of Sciences 102, no. 30 (2005): 10466–71. http://dx.doi.org/10.1073/pnas.0503859102.

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25

Chakraborty, Debayan, and David J. Wales. "Energy Landscape and Pathways for Transitions between Watson–Crick and Hoogsteen Base Pairing in DNA." Journal of Physical Chemistry Letters 9, no. 1 (2017): 229–41. http://dx.doi.org/10.1021/acs.jpclett.7b01933.

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26

Nosenko, Yevgeniy, Maksim Kunitski, Tina Stark, Michael Göbel, Pilarisetty Tarakeshwar, and Bernhard Brutschy. "4-Aminobenzimidazole–1-Methylthymine: A Model for Investigating Hoogsteen Base-Pairing between Adenine and Thymine." Journal of Physical Chemistry A 115, no. 41 (2011): 11403–11. http://dx.doi.org/10.1021/jp205575w.

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27

Kawai, Kiyohiko, Isao Saito, and Hiroshi Sugiyama. "Stabilization of Hoogsteen base pairing by introduction of NH2 group at the C8 position of adenine." Tetrahedron Letters 39, no. 29 (1998): 5221–24. http://dx.doi.org/10.1016/s0040-4039(98)01026-0.

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28

Mládek, Arnošt, Purshotam Sharma, Abhijit Mitra, Dhananjay Bhattacharyya, Jiří Šponer, and Judit E. Šponer. "Trans Hoogsteen/Sugar Edge Base Pairing in RNA. Structures, Energies, and Stabilities from Quantum Chemical Calculations." Journal of Physical Chemistry B 113, no. 6 (2009): 1743–55. http://dx.doi.org/10.1021/jp808357m.

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29

SEELA, F., and T. WENZEL. "ChemInform Abstract: Hoogsteen-Duplex DNA: Synthesis and Base Pairing of Oligonucleotides Containing 1-Deaza-2′-deoxyadenosine." ChemInform 26, no. 7 (2010): no. http://dx.doi.org/10.1002/chin.199507246.

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30

Kumar, R. K., A. D. Gunjal, and K. N. Ganesh. "8-Amino-2′-deoxyadenosine:2′-Deoxythymidine Base Pairing: Identification of Novel Reverse Hoogsteen Mode in Solution." Biochemical and Biophysical Research Communications 204, no. 2 (1994): 788–93. http://dx.doi.org/10.1006/bbrc.1994.2528.

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31

Stone, Sharon E., Dhiman Ray, and Ioan Andricioaei. "Hoogsteen Base Pairing in DNA: Effects of Force Field Models on Free Energy and Transition Pathways." Biophysical Journal 120, no. 3 (2021): 77a. http://dx.doi.org/10.1016/j.bpj.2020.11.684.

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32

Wan, Liqi, Sik Lok Lam, Hung Kay Lee, and Pei Guo. "Effects of Adenine Methylation on the Structure and Thermodynamic Stability of a DNA Minidumbbell." International Journal of Molecular Sciences 22, no. 7 (2021): 3633. http://dx.doi.org/10.3390/ijms22073633.

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DNA methylation is a prevalent regulatory modification in prokaryotes and eukaryotes. N1-methyladenine (m1A) and N6-methyladenine (m6A) have been found to be capable of altering DNA structures via disturbing Watson–Crick base pairing. However, little has been known about their influences on non-B DNA structures, which are associated with genetic instabilities. In this work, we investigated the effects of m1A and m6A on both the structure and thermodynamic stability of a newly reported DNA minidumbbell formed by two TTTA tetranucleotide repeats. As revealed by the results of nuclear magnetic re

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33

Yang, Changwon, Eunae Kim, and Youngshang Pak. "Free energy landscape and transition pathways from Watson–Crick to Hoogsteen base pairing in free duplex DNA." Nucleic Acids Research 43, no. 16 (2015): 7769–78. http://dx.doi.org/10.1093/nar/gkv796.

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34

Abrescia, Nicola G. A., Carlos González, Catherine Gouyette, and Juan A. Subirana. "X-ray and NMR Studies of the DNA Oligomer d(ATATAT): Hoogsteen Base Pairing in Duplex DNA†." Biochemistry 43, no. 14 (2004): 4092–100. http://dx.doi.org/10.1021/bi0355140.

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35

Santangelo, Maria Grazia, Philipp M. Antoni, Bernhard Spingler, and Gunnar Jeschke. "Can Copper(II) Mediate Hoogsteen Base-Pairing in a Left-Handed DNA Duplex? A Pulse EPR Study." ChemPhysChem 11, no. 3 (2009): 599–606. http://dx.doi.org/10.1002/cphc.200900672.

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36

Rebek, Julius, Kevin Williams, Kevin Parris, Pablo Ballester, and Kyu-Sung Jeong. "Molecular Recognition: Stacking Interactions Influence Watson-Crick vs. Hoogsteen Base-Pairing in a Model for Adenine Receptors." Angewandte Chemie International Edition in English 26, no. 12 (1987): 1244–45. http://dx.doi.org/10.1002/anie.198712441.

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37

He, Sha, Hai Zhang, Haihua Liu, and Hao Zhu. "LongTarget: a tool to predict lncRNA DNA-binding motifs and binding sites via Hoogsteen base-pairing analysis." Bioinformatics 31, no. 2 (2014): 178–86. http://dx.doi.org/10.1093/bioinformatics/btu643.

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38

Sheehan, Jonathan H., Jarrod A. Smith, Pradeep S. Pallan, Terry P. Lybrand, and Martin Egli. "Molecular Dynamics Simulation of Homo-DNA: The Role of Crystal Packing in Duplex Conformation." Crystals 9, no. 10 (2019): 532. http://dx.doi.org/10.3390/cryst9100532.

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The (4′→6′)-linked DNA homolog 2′,3′-dideoxy-β-D-glucopyranosyl nucleic acid (dideoxy-glucose nucleic acid or homo-DNA) exhibits stable self-pairing of the Watson–Crick and reverse-Hoogsteen types, but does not cross-pair with DNA. Molecular modeling and NMR solution studies of homo-DNA duplexes pointed to a conformation that was nearly devoid of a twist and a stacking distance in excess of 4.5 Å. By contrast, the crystal structure of the homo-DNA octamer dd(CGAATTCG) revealed a right-handed duplex with average values for helical twist and rise of ca. 15° and 3.8 Å, respectively. Other key fea

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39

Zhao, Linlin, Matthew G. Pence, Plamen P. Christov, et al. "Basis of Miscoding of the DNA Adduct N2,3-Ethenoguanine by Human Y-family DNA Polymerases." Journal of Biological Chemistry 287, no. 42 (2012): 35516–26. http://dx.doi.org/10.1074/jbc.m112.403253.

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N2,3-Ethenoguanine (N2,3-ϵG) is one of the exocyclic DNA adducts produced by endogenous processes (e.g. lipid peroxidation) and exposure to bioactivated vinyl monomers such as vinyl chloride, which is a known human carcinogen. Existing studies exploring the miscoding potential of this lesion are quite indirect because of the lability of the glycosidic bond. We utilized a 2′-fluoro isostere approach to stabilize this lesion and synthesized oligonucleotides containing 2′-fluoro-N2,3-ϵ-2′-deoxyarabinoguanosine to investigate the miscoding potential of N2,3-ϵG by Y-family human DNA polymerases (po

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40

Zhu, Jiaying, Changhao Li, Xu Peng, and Xiuren Zhang. "RNA architecture influences plant biology." Journal of Experimental Botany 72, no. 11 (2021): 4144–60. http://dx.doi.org/10.1093/jxb/erab030.

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Abstract The majority of the genome is transcribed to RNA in living organisms. RNA transcripts can form astonishing arrays of secondary and tertiary structures via Watson–Crick, Hoogsteen, or wobble base pairing. In vivo, RNA folding is not a simple thermodynamic event of minimizing free energy. Instead, the process is constrained by transcription, RNA-binding proteins, steric factors, and the microenvironment. RNA secondary structure (RSS) plays myriad roles in numerous biological processes, such as RNA processing, stability, transportation, and translation in prokaryotes and eukaryotes. Emer

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41

Schlitt, Katherine M., Andrea L. Millen, Stacey D. Wetmore, and Richard A. Manderville. "An indole-linked C8-deoxyguanosine nucleoside acts as a fluorescent reporter of Watson–Crick versus Hoogsteen base pairing." Organic & Biomolecular Chemistry 9, no. 5 (2011): 1565. http://dx.doi.org/10.1039/c0ob00883d.

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42

McLean, Michael J., and Michael J. Waring. "Chemical probes reveal no evidence of Hoogsteen base pairing in complexes formed between echinomycin and DNA in solution." Journal of Molecular Recognition 1, no. 3 (1988): 138–51. http://dx.doi.org/10.1002/jmr.300010307.

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43

Shanmugam, Ganesh, Ivan D. Kozekov, F. Peter Guengerich, Carmelo J. Rizzo, and Michael P. Stone. "Structure of the 1,N2-Ethenodeoxyguanosine Adduct Opposite Cytosine in Duplex DNA: Hoogsteen Base Pairing at pH 5.2†." Chemical Research in Toxicology 21, no. 9 (2008): 1795–805. http://dx.doi.org/10.1021/tx8001466.

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44

Millen, Andrea L., Cassandra D. M. Churchill, Richard A. Manderville, and Stacey D. Wetmore. "Effect of Watson−Crick and Hoogsteen Base Pairing on the Conformational Stability of C8-Phenoxyl-2′-deoxyguanosine Adducts." Journal of Physical Chemistry B 114, no. 40 (2010): 12995–3004. http://dx.doi.org/10.1021/jp105817p.

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45

Ray, Dhiman, and Ioan Andricioaei. "Hoogsteen Base Pairing in DNA vs RNA: Thermodynamics and Kinetics from Enhanced Sampling Simulation and Markov State Modeling." Biophysical Journal 118, no. 3 (2020): 299a—300a. http://dx.doi.org/10.1016/j.bpj.2019.11.1697.

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46

Seaman, Frederick C., and Laurence Hurley. "Interstrand cross-linking by bizelesin produces a Watson-Crick to Hoogsteen base-pairing transition region in d(CGTAATTACG)2." Biochemistry 32, no. 47 (1993): 12577–85. http://dx.doi.org/10.1021/bi00210a005.

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47

Vreede, Jocelyne, Peter G. Bolhuis, and David W. H. Swenson. "Path Sampling Simulations of the Mechanisms and Rates of Transitions between Watson-Crick and Hoogsteen Base Pairing in DNA." Biophysical Journal 112, no. 3 (2017): 214a. http://dx.doi.org/10.1016/j.bpj.2016.11.1181.

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48

Park, Gyuri, Byunghwa Kang, Soyeon V. Park, Donghwa Lee, and Seung Soo Oh. "A unified computational view of DNA duplex, triplex, quadruplex and their donor–acceptor interactions." Nucleic Acids Research 49, no. 9 (2021): 4919–33. http://dx.doi.org/10.1093/nar/gkab285.

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Abstract DNA can assume various structures as a result of interactions at atomic and molecular levels (e.g., hydrogen bonds, π–π stacking interactions, and electrostatic potentials), so understanding of the consequences of these interactions could guide development of ways to produce elaborate programmable DNA for applications in bio- and nanotechnology. We conducted advanced ab initio calculations to investigate nucleobase model structures by componentizing their donor-acceptor interactions. By unifying computational conditions, we compared the independent interactions of DNA duplexes, triple

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49

Kou, Yi, Myong-Chul Koag, and Seongmin Lee. "Promutagenicity of 8-Chloroguanine, A Major Inflammation-Induced Halogenated DNA Lesion." Molecules 24, no. 19 (2019): 3507. http://dx.doi.org/10.3390/molecules24193507.

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Chronic inflammation is closely associated with cancer development. One possible mechanism for inflammation-induced carcinogenesis is DNA damage caused by reactive halogen species, such as hypochlorous acid, which is released by myeloperoxidase to kill pathogens. Hypochlorous acid can attack genomic DNA to produce 8-chloro-2′-deoxyguanosine (ClG) as a major lesion. It has been postulated that ClG promotes mutagenic replication using its syn conformer; yet, the structural basis for ClG-induced mutagenesis is unknown. We obtained crystal structures and kinetics data for nucleotide incorporation

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50

Joerger, Andreas C. "Extending the Code of Sequence Readout by Gene Regulatory Proteins: The Role of Hoogsteen Base Pairing in p53-DNA Recognition." Structure 26, no. 9 (2018): 1163–65. http://dx.doi.org/10.1016/j.str.2018.08.008.

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