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Journal articles on the topic 'Phylogenetic types'

Author: Grafiati

Published: 2 June 2025

Last updated: 31 July 2025

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1

Barker, R. M., G. M. Kearney, P. Nicholson, A. L. Blair, R. C. Porter, and P. B. Crichton. "Types of Salmonella paratyphi B and their phylogenetic significance." Journal of Medical Microbiology 26, no. 4 (1988): 285–93. http://dx.doi.org/10.1099/00222615-26-4-285.

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2

PARENTI, LYNNE R. "The phylogenetic significance of bone types in euteleost fishes." Zoological Journal of the Linnean Society 87, no. 1 (1986): 37–51. http://dx.doi.org/10.1111/j.1096-3642.1986.tb01329.x.

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3

Wingfield, Allison. "Understanding Human Papillomavirus Types and Significance Through Phylogenetic Trees." American Journal of Clinical Pathology 150, suppl_1 (2018): S77. http://dx.doi.org/10.1093/ajcp/aqy094.186.

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4

Liggett, Thomas M., and Rinaldo B. Schinazi. "A Stochastic Model for Phylogenetic Trees." Journal of Applied Probability 46, no. 2 (2009): 601–7. http://dx.doi.org/10.1239/jap/1245676110.

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We propose the following simple stochastic model for phylogenetic trees. New types are born and die according to a birth and death chain. At each birth we associate a fitness to the new type sampled from a fixed distribution. At each death the type with the smallest fitness is killed. We show that if the birth (i.e. mutation) rate is subcritical, we obtain a phylogenetic tree consistent with an influenza tree (few types at any given time and one dominating type lasting a long time). When the birth rate is supercritical, we obtain a phylogenetic tree consistent with an HIV tree (many types at a

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Liggett, Thomas M., and Rinaldo B. Schinazi. "A Stochastic Model for Phylogenetic Trees." Journal of Applied Probability 46, no. 02 (2009): 601–7. http://dx.doi.org/10.1017/s0021900200005684.

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We propose the following simple stochastic model for phylogenetic trees. New types are born and die according to a birth and death chain. At each birth we associate a fitness to the new type sampled from a fixed distribution. At each death the type with the smallest fitness is killed. We show that if the birth (i.e. mutation) rate is subcritical, we obtain a phylogenetic tree consistent with an influenza tree (few types at any given time and one dominating type lasting a long time). When the birth rate is supercritical, we obtain a phylogenetic tree consistent with an HIV tree (many types at a

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6

Ahmed, Mohammed, and Oleksandr Holovachov. "Twenty Years after De Ley and Blaxter—How Far Did We Progress in Understanding the Phylogeny of the Phylum Nematoda?" Animals 11, no. 12 (2021): 3479. http://dx.doi.org/10.3390/ani11123479.

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Molecular phylogenetics brought radical changes to our understanding of nematode evolution, resulting in substantial modifications to nematode classification implemented by De Ley and Blaxter and widely accepted now. Numerous phylogenetic studies were subsequently published that both improved and challenged this classification. Here we present a summary of these changes. We created cladograms that summarise phylogenetic relationships within Nematoda using phylum-wide to superfamily-wide molecular phylogenies published in since 2005, and supplemented with the phylogenetic analyses for Enoplia a

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7

Giebler, Julia, Lukas Y. Wick, Michael Schloter, Hauke Harms, and Antonis Chatzinotas. "Evaluating the Assignment ofalkBTerminal Restriction Fragments and Sequence Types to Distinct Bacterial Taxa." Applied and Environmental Microbiology 79, no. 9 (2013): 3129–32. http://dx.doi.org/10.1128/aem.04028-12.

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ABSTRACTSequence and terminal restriction fragment length polymorphism (T-RFLP) analyses revealed multiplealkBgene copies/cell in soil bacterial isolates and an apparently high genetic mobility among various phylogenetic groups. Identifying alkane degraders byalkBterminal restriction fragments (T-RFs) and sequences is strongly biased, as the phylogenetic trees based on 16S rRNA andalkBgene sequences were highly inconsistent.

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Bernard, Hans-Ulrich, Itzel E. Calleja-Macias, and S. Terence Dunn. "Genome variation of human papillomavirus types: Phylogenetic and medical implications." International Journal of Cancer 118, no. 5 (2005): 1071–76. http://dx.doi.org/10.1002/ijc.21655.

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Mavrodiev, Evgeny V., and Nicholas E. Mavrodiev. "Essays on the Binary Representations of the DNA Data." DNA 5, no. 1 (2025): 10. https://doi.org/10.3390/dna5010010.

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The advancement of modern genomics has led to the large-scale industrial production of molecular data and scientific outcomes. Simultaneously, conventional DNA character alignments (sequence alignments) are utilized for DNA-based phylogenetic analyses without further recoding procedures or any a priori determination of character polarity, contrary to the requirements of foundations of phylogenetic systematics. These factors are the primary reasons why the binary perspective has not been implemented in modern molecular phylogenetics. In this study, we demonstrate how to recode conventional DNA

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10

Ali, Munim Radwan. "Phylogenetic Groups and Antibiotic Resistance Characteristics of Uropathogenic Escherichia coli." Journal of Communicable Diseases 55, no. 01 (2023): 36–44. http://dx.doi.org/10.24321/0019.5138.202306.

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Background:Different phylogenetic groups of uropathogenic Escherichia coli are associated with increased virulence and multidrug resistance, highlighting the importance of understanding the genetic characteristics of these isolates for effective treatment and prevention of UTIs. Genomic analysis was conducted on 100 Escherichia coli isolates obtained from multiple hospitals in Baghdad, Iraq, which showed extensive resistance to multiple drugs, including both multi-drug resistant (MDR) and extensively-drug resistant (XDR) isolates. Methodology: Antibiotic susceptibility was evaluated using the

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11

McDowell, Andrew, Alexandra L. Perry, Peter A. Lambert, and Sheila Patrick. "A new phylogenetic group of Propionibacterium acnes." Journal of Medical Microbiology 57, no. 2 (2008): 218–24. http://dx.doi.org/10.1099/jmm.0.47489-0.

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Immunofluorescence microscopy-based identification of presumptive Propionibacterium acnes isolates, using the P. acnes-specific mAb QUBPa3, revealed five organisms with an atypical cellular morphology. Unlike the coryneform morphology seen with P. acnes types I and II, these isolates exhibited long slender filaments (which formed large tangled aggregates) not previously described in P. acnes. No reaction with mAbs that label P. acnes types IA (QUBPa1) and II (QUBPa2) was observed. Nucleotide sequencing of the 16S rRNA gene (1484 bp) revealed the isolates to have between 99.8 and 99.9 % identit

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12

Adamo, Irene, Carles Castaño, José Antonio Bonet, Carlos Colinas, Juan Martínez de Aragón, and Josu G. Alday. "Lack of Phylogenetic Differences in Ectomycorrhizal Fungi among Distinct Mediterranean Pine Forest Habitats." Journal of Fungi 7, no. 10 (2021): 793. http://dx.doi.org/10.3390/jof7100793.

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Understanding whether the occurrences of ectomycorrhizal species in a given tree host are phylogenetically determined can help in assessing different conservational needs for each fungal species. In this study, we characterized ectomycorrhizal phylogenetic composition and phylogenetic structure in 42 plots with five different Mediterranean pine forests: i.e., pure forests dominated by P. nigra, P. halepensis, and P. sylvestris, and mixed forests of P. nigra-P. halepensis and P. nigra-P. sylvestris, and tested whether the phylogenetic structure of ectomycorrhizal communities differs among these

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13

Rong, J., X. Wang, S. R. Schulze, et al. "Types, levels and patterns of low-copy DNA sequence divergence, and phylogenetic implications, for Gossypium genome types." Heredity 108, no. 5 (2012): 500–506. http://dx.doi.org/10.1038/hdy.2011.111.

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14

Verde Arregoitia, Luis D., Diana O. Fisher, and Manuel Schweizer. "Morphology captures diet and locomotor types in rodents." Royal Society Open Science 4, no. 1 (2017): 160957. http://dx.doi.org/10.1098/rsos.160957.

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To understand the functional meaning of morphological features, we need to relate what we know about morphology and ecology in a meaningful, quantitative framework. Closely related species usually share more phenotypic features than distant ones, but close relatives do not necessarily have the same ecologies. Rodents are the most diverse group of living mammals, with impressive ecomorphological diversification. We used museum collections and ecological literature to gather data on morphology, diet and locomotion for 208 species of rodents from different bioregions to investigate how morphologi

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Huestis, Gordon M., and Carlos F. Quiros. "336 PHYLOGENETIC RELATIONSHIPS OF CELERY AND ITS WILD RELATIVES BASED ON RESTRICTION FRAGMENT LENGTH POLYMORPHISMS." HortScience 29, no. 5 (1994): 478f—478. http://dx.doi.org/10.21273/hortsci.29.5.478f.

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Phylogenetic relationships of seven Apium species, including three horticultural types of A. graveolens, were assayed for RFLPs using cDNA, chloroplast DNA, and rDNA probes. Most of the probes had been previously mapped in celery. The three horticultural types of A. graveolens were found to be less polymorphic than the wild species and in phylogenetic analysis they clustered together. The wild species formed a cluster on the dendrogram corresponding to their origin in the southern hemisphere. A. nodiflorum, a wild species from Ethiopia formed a branch on the phylogenetic tree apart from all ot

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OCAMPO, GILBERTO, and LAURA MAIR-SÁNCHEZ. "Diversification of inflorescence types in Portulaca (Portulacaceae) and its systematic implications." Phytotaxa 358, no. 2 (2018): 189. http://dx.doi.org/10.11646/phytotaxa.358.2.6.

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Portulaca is the only genus in Portulacaceae and includes ca. 100 species with worldwide distribution. Inflorescence types in Portulaca have been used as an important character in infrageneric classifications and it has been suggested that capitula and solitary flowers derive from a cyme. The present paper focuses on the study of the diversification patterns of the inflorescence within Portulacaceae based on a phylogenetic approach. A phylogenetic framework was used to estimate the ancestral inflorescence type under parsimony and maximum likelihood criteria. The results, although ambiguous, su

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17

Hamilton, Andrew. "From types to individuals: Hennig’s ontology and the development of phylogenetic systematics." Cladistics 28, no. 2 (2011): 130–40. http://dx.doi.org/10.1111/j.1096-0031.2011.00372.x.

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18

Thornhill, Andrew H., and Michael D. Crisp. "Phylogenetic assessment of pollen characters in Myrtaceae." Australian Systematic Botany 25, no. 3 (2012): 171. http://dx.doi.org/10.1071/sb11019.

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Identifying synapomorphic morphological characters is needed to select and then accurately place fossils as calibrations on a phylogeny in molecular-dating analyses. The plant family Myrtaceae, with 130 genera and 5500 species, has nine different pollen types, whereas the fossil pollen record of Myrtaceae, represented by the genus Myrtaceidites, putatively extends back to the Cretaceous and also contains at least nine distinct morphospecies. To reveal potential links between extant and fossil pollen, we optimised pollen characters scored from a recent family-wide review of extant Myrtaceae pol

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19

Hagemann, Wolfgang. "THE OPTIONS OF PLANT ORGANISMS FOR THE DEVELOPMENT OF NEW TYPES OR TYPOGENESIS IN PLANTS." Revista de la Academia Colombiana de Ciencias Exactas, Físicas y Naturales 29, no. 110 (2023): 25–42. http://dx.doi.org/10.18257/raccefyn.29(110).2005.2122.

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The presented paper deals with the comparative morphological method (typology) combined with developmental studies as a means for understanding phylogenetic relations between different plant forms. This method becomes illuminated by two examples. The first are the phylogenetic relations between liverworts and ferns from which many follow the open repens-type. The second illuminates the much more complicated relationsbetween the primitive, tree-like angiosperms which returned via shrubs and herbal perennial plants to the delicate plants of the open repens-type. The angiospermic synflorescence-

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20

Gobbi, Paola, Silvia Pavone, Massimiliano Orso, et al. "Molecular Characterization of Small Ruminant Lentiviruses in Sheep and Goats: A Systematic Review." Animals 14, no. 23 (2024): 3545. https://doi.org/10.3390/ani14233545.

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Small ruminant lentiviruses (SRLVs) are responsible for chronic and progressive multisystemic clinical forms, which significantly reduce flocks’ productivity and have a considerable economic impact on the small ruminant industry. Due to the increase in genetic analysis studies and the potential for misclassification of certain strains, owing to the high genetic variability of these viruses, a systematic review was deemed necessary. This review explores the types of matrices used for molecular detection and phylogenetic studies, the genomic regions selected as targets, and the software utilized

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21

Tsang, Raymond S. W., Michelle Shuel, Tauqeer Ahmad, et al. "Whole genome sequencing to study the phylogenetic structure of serotype a Haemophilus influenzae recovered from patients in Canada." Canadian Journal of Microbiology 66, no. 2 (2020): 99–110. http://dx.doi.org/10.1139/cjm-2019-0406.

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This study examined the phylogenetic structure of serotype a Haemophilus influenzae (Hia) isolates recovered from patients in Canada. Hia isolates from 490 separate patients and an American Type Culture Collection (ATCC) strain were analyzed by multilocus sequence typing (MLST), with 18 different sequence types (STs) identified. Most (85.7%) Hia patient isolates were typed as ST-23 and another 12.7% belonged to 14 different STs with 6, 5, or 4 MLST gene loci related to ST-23 (ST-23 complex). Core genome single-nucleotide variation phylogeny (SNVPhyl) on whole genome sequence (WGS) data of 121

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22

Maunula, Leena, and Carl-Henrik von Bonsdorff. "Frequent Reassortments May Explain the Genetic Heterogeneity of Rotaviruses: Analysis of Finnish Rotavirus Strains." Journal of Virology 76, no. 23 (2002): 11793–800. http://dx.doi.org/10.1128/jvi.76.23.11793-11800.2002.

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ABSTRACT The predominant rotavirus electropherotypes (e-types) during 17 epidemic seasons (1980 through 1997) in Finland were established, and representative virus isolates were studied by nucleotide sequencing and phylogenetic analysis. The virus isolates were either P[8]G1 or P[8]G4 types. The G1 and G4 strains formed one G1 lineage (VP7-G1-1) and one G4 lineage, respectively. Otherwise, they belonged to two P[8] lineages (VP4-P[8]-1 and -2) unrelated to their G types. Phylogenetic analysis of partial sequences of all 11 RNA segments obtained from the strains also revealed genetic diversity

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23

MISHRA, MADHU, T. G. SUMITHRA, SANTOSH KUMAR, SANTOSH KUMAR GUPTA, RAJESH KUMAR AGARWAL, and VISWAS KONASAGARA NAGALEEKAR. "Phylogenetic analysis of Indian isolates of Pasteurella multocida based on partial 16S rRNA gene sequences: Association of caprine isolate with lineage B." Indian Journal of Animal Sciences 88, no. 12 (2018): 1339–45. http://dx.doi.org/10.56093/ijans.v88i12.85755.

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Pasteurella multocida is responsible for diseases, which are endemic and economically important in India, still comparative investigations on phylogenetic relations of Indian P. multocida isolates are scarce. Therefore, present study was undertaken to understand the phylogenetic relationship of several isolates belonging to different host, place of isolation and capsular types based on partial 16S rRNA gene sequencing. In the current study, a 838 bp fragment of 16S rRNA gene of 35 field isolates of P. multocida belonging to different capsular types, recovered from cattle, buffalo, sheep, goat,

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24

Ge, Zhiwei, Tao Yu, Xuying Tian, Xiangxiang Chen, Yiwen Yao, and Lingfeng Mao. "Analysis of Understory Plant Community Assembly Differences in Moso Bamboo Forests in the Subtropical Evergreen Broad-Leaved Forest Region of Eastern China." Forests 16, no. 3 (2025): 478. https://doi.org/10.3390/f16030478.

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Moso bamboo (Phyllostachys edulis (Carrière) J. Houz.) forests are a vital forest type in subtropical China. This study investigates the diversity, floristic composition, and phylogenetic structure of understory vegetation in these bamboo forests within evergreen broad-leaved forests of eastern subtropical China. Using grid-based sampling, we calculated species diversity and phylogenetic indices, and employed correlation analysis, redundancy analysis, and structural equation modeling to assess the effects of canopy closure, soil properties, and topography. The understory exhibited high species

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Ganaie, Masood Majaz, Zaffar Ahmad Reshi, Vijeshwer Verma, and Vaseem Raja. "Family Solanaceae: Taxonomy and modern trends." Annals of Plant Sciences 7, no. 9 (2018): 2403. http://dx.doi.org/10.21746/aps.2018.7.9.1.

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Solanaceae belongs to that group of families, which are included in almost all angiosperm classifications indicating naturalness of the family. The family being one of the most evolutionarily successful and advanced taxa shows astonishing level of diversity reflected in the form of various types of adaptations. The high level of diversity within the family in addition to other unusual features have reflected in poor understanding of its phylogenetics. Fossil record of angiosperms particularly of Solanaceae) is very meager and relatively recent, so use of morphology and other conventional chara

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Li, Wen, Xin-Cheng Huang, Yi-Lei Wang, et al. "Plastid Phylogenomics of Paeonia and the Evolution of Ten Flower Types in Tree Peony." Genes 13, no. 12 (2022): 2229. http://dx.doi.org/10.3390/genes13122229.

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Paeonia suffruticosa Andr., a member of Paeoniaceae, is native to China. In its 1600 years’ cultivation, more than 2000 cultivars for different purposes (ornamental, medicinal and oil use) have been inbred. However, there are still some controversies regarding the provenance of tree peony cultivars and the phylogenetic relationships between and within different cultivar groups. In this study, plastid genome sequencing was performed on 10 representative tree peony cultivars corresponding to 10 different flower types. Structure and comparative analyses of the plastid genomes showed that the tota

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Chouhy, Diego, Elisa M. Bolatti, Germán R. Pérez, and Adriana A. Giri. "Analysis of the genetic diversity and phylogenetic relationships of putative human papillomavirus types." Journal of General Virology 94, no. 11 (2013): 2480–88. http://dx.doi.org/10.1099/vir.0.055137-0.

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More than 170 human papillomavirus (HPV) types have been completely sequenced, curated and divided into five genera: Alphapapillomavirus, Betapapillomavirus, Gammapapillomavirus, Mupapillomavirus and Nupapillomavirus. With the application of PCR methods, hundreds of putative novel HPV types have been identified as PCR amplicons in mucosa and skin. However, at present there are no studies reporting a systematic search of the currently known L1 amplicons and their phylogenetic relationships. This survey revealed the existence of at least 202 different putative HPV types that are pending for full

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28

Grinevich, Anna. "Using Phylogenetic Analysis for Tale Type Identification (Ob Ugric Narratives)." Cultural and Historical Heritage: Preservation, Presentation, Digitalization 10, no. 2 (2024): 98–107. https://doi.org/10.55630/kinj.2024.100207.

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The study aims to identify the fairy tale types associated with Imi Khily, an important figure in Ob Ugric folklore. This tale character is associated with a deity from the highest pantheon of the Khanty people, which researchers link to Iranian influence on Ob Ugric mythology. We examined 21 texts in the Khanty language, including both myths and fary tales. By applying phylogenetic analysis and the principle of maximum parsimony to a corpus of texts, four primary tale types were identified within the narrative cycle studied: Myth of the Celestial Hunt, Tereshechka, The Hero Wins a Bride, and

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Golokhvast, Kirill S., Ivan V. Seryodkin, Vladimir V. Chaika, Alexander M. Zakharenko, and Igor E. Pamirsky. "Phytoliths in Taxonomy of Phylogenetic Domains of Plants." BioMed Research International 2014 (2014): 1–9. http://dx.doi.org/10.1155/2014/648326.

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We discuss, from the aspect of phylogeny, the interrelationships of the phytolith types in plants from the main taxonomical groups (algae, lichens, horsetails, gymnosperms, and floral plants) with homologues of known proteins of biomineralization. Phytolith morphotypes in various phylogenetic plant domains have different shapes. We found that, in ancient types of plants (algae, horsetails, and gymnosperms), there are fewer different phytolith morphotypes compared to more modern plants (floral plants). The phytolith morphotypes in primitive plants are generally larger than the morphotypes in mo

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Forster, Peter, Lucy Forster, Colin Renfrew, and Michael Forster. "Phylogenetic network analysis of SARS-CoV-2 genomes." Proceedings of the National Academy of Sciences 117, no. 17 (2020): 9241–43. http://dx.doi.org/10.1073/pnas.2004999117.

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In a phylogenetic network analysis of 160 complete human severe acute respiratory syndrome coronavirus 2 (SARS-Cov-2) genomes, we find three central variants distinguished by amino acid changes, which we have named A, B, and C, with A being the ancestral type according to the bat outgroup coronavirus. The A and C types are found in significant proportions outside East Asia, that is, in Europeans and Americans. In contrast, the B type is the most common type in East Asia, and its ancestral genome appears not to have spread outside East Asia without first mutating into derived B types, pointing

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Dai, Shuheng, Yurong He, Xue Wang, Guangyao Wang, Yixue Zhou, and Chunlin Li. "Response of Bird Communities to Human-Dominated Habitats in Southern Anhui Mountainous Area, China." Diversity 17, no. 4 (2025): 261. https://doi.org/10.3390/d17040261.

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Given that many species are threatened by human activities, understanding wildlife responses to land use changes is crucial for effective biodiversity conservation. Quantifying species diversity from multiple dimensions provides a more comprehensive understanding of community dynamics, such as insights into functional and phylogenetic diversity, which are crucial for capturing the full complexity of bird communities. In this study, we surveyed bird communities in the Southern Anhui Mountainous Area across four seasons, including two human-dominated land use types (farmland and village) and one

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Bogaards, Johannes A., Pascal van der Weele, Petra J. Woestenberg, Birgit H. B. van Benthem, and Audrey J. King. "Bivalent Human Papillomavirus (HPV) Vaccine Effectiveness Correlates With Phylogenetic Distance From HPV Vaccine Types 16 and 18." Journal of Infectious Diseases 220, no. 7 (2019): 1141–46. http://dx.doi.org/10.1093/infdis/jiz280.

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Abstract To substantiate cross-protection reported across AS04-adjuvanted bivalent human papillomavirus (HPV) vaccine (2vHPV) studies, we reevaluated vaccine effectiveness against type-specific HPV positivity as a function of phylogenetic distance to vaccine target types HPV-16 and -18. We provide evidence of sustained cross-protection up to 8 years postvaccination in a high-risk population in the Netherlands. Moreover, our findings suggest that genomic distance better explains cross-protection than distance measures based on capsid antigens only. Taken together, 2vHPV is predicted to provide

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Li, Yongmin, Xiaoyu Wang, Xu Yong, Yatao Wu, Chuansheng Wu, and Wenfeng Hu. "Assembly Processes of Waterbird Communities Across Different Types of Wetlands in the Middle Reaches of the Huaihe River Basin." Water 17, no. 8 (2025): 1118. https://doi.org/10.3390/w17081118.

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Understanding the processes and potential mechanisms of species coexistence within biological communities is a key issue in biodiversity conservation. The Huaihe River Basin, situated in the transitional zone between northern and southern China, encompasses diverse wetland types in its middle reaches, including lakes, ponds, rivers, and subsidence areas. This unique combination of habitats provides an ideal natural laboratory for investigating the mechanisms governing bird community dynamics. Here, we quantified the species, taxonomic, functional, and phylogenetic diversity of waterbird commun

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Yamashita, Satoshi, and Dai Hirose. "Phylogenetic analysis of Ganoderma australe complex in a Bornean tropical rainforest and implications for mechanism of coexistence of various phylogenetic types." Fungal Ecology 24 (December 2016): 1–6. http://dx.doi.org/10.1016/j.funeco.2016.04.006.

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TRIFT, I., and A. A. ANDERBERG. "FOLIAR SCLEREIDS IN DIONYSIA (PRIMULACEAE) FROM A PHYLOGENETIC PERSPECTIVE." Edinburgh Journal of Botany 63, no. 1 (2006): 21–48. http://dx.doi.org/10.1017/s096042860600045x.

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Sclereid presence and distribution were studied in leaves from 50 species of Dionysia (Primulaceae). Of 16 species not previously investigated, 11 were shown to possess sclereids. The sclereids are dermal, terminal or diffused (according to the position in the leaf) and develop from different tissues, and hence are not homologous structures. The presence of different types of sclereids in different species is discussed. Sclereid characters are optimized on a cladogram based on an analysis of three DNA regions. Some clades are associated with certain types of sclereids. Terminal sclereids are m

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Köhler, Anja, Marc Gottschling, Kizzie Manning, et al. "Genomic characterization of ten novel cutaneous human papillomaviruses from keratotic lesions of immunosuppressed patients." Journal of General Virology 92, no. 7 (2011): 1585–94. http://dx.doi.org/10.1099/vir.0.030593-0.

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Viral warts from immunosuppressed organ transplant recipients (OTR) persist over years and may progress into non-melanoma skin cancer. The types of human papillomaviruses (HPV) in such lesions are different from that seen in the general population. A subset of these lesions is not infected with the classical wart-associated HPV types. In order to gain a better understanding of the HPV types in those lesions, we isolated ten novel HPVs from persisting keratotic lesions of immunosuppressed OTRs by rolling circle amplification and subsequent long-template PCR. Additionally, we sequenced and chara

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Isobe, Kazuo, Nicholas J. Bouskill, Eoin L. Brodie, Erika A. Sudderth, and Jennifer B. H. Martiny. "Phylogenetic conservation of soil bacterial responses to simulated global changes." Philosophical Transactions of the Royal Society B: Biological Sciences 375, no. 1798 (2020): 20190242. http://dx.doi.org/10.1098/rstb.2019.0242.

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Soil bacterial communities are altered by anthropogenic drivers such as climate change-related warming and fertilization. However, we lack a predictive understanding of how bacterial communities respond to such global changes. Here, we tested whether phylogenetic information might be more predictive of the response of bacterial taxa to some forms of global change than others. We analysed the composition of soil bacterial communities from perturbation experiments that simulated warming, drought, elevated CO 2 concentration and phosphorus (P) addition. Bacterial responses were phylogenetically c

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Eriksson, Ove E. "DNA and ascomycete systematics." Canadian Journal of Botany 73, S1 (1995): 784–89. http://dx.doi.org/10.1139/b95-323.

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Present knowledge of different types of RNAs as phylogenetic markers among the fungi is discussed, and examples of phylogenetically informative 18S rRNA signature sequences are given. Such signatures give phylogenetic information that is not provided by parsimony or distance analyses of longer gene sequences. A single signature cannot be used as a decisive criterion for defining taxa, but signature sequences give invaluable hints on phylogenetic relationships and can be included in data matrices as morphological criteria when using parsimony analysis. Key words: DNA, ascomycete phylogeny, sign

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., O. Olowofeso, J. Y. Wang ., K. Z. Xie ., and G. Q. Liu . "Phylogenetic Scenario of Port-City Chickens in China Based on Two-Marker Types." International Journal of Poultry Science 4, no. 4 (2005): 206–12. http://dx.doi.org/10.3923/ijps.2005.206.212.

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Lacalli and, T. C., T. H. J. Gilmour, and S. J. Kelly. "The oral nerve plexus in amphioxus larvae: function, cell types and phylogenetic significance." Proceedings of the Royal Society of London. Series B: Biological Sciences 266, no. 1427 (1999): 1461–70. http://dx.doi.org/10.1098/rspb.1999.0801.

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41

López-Aguirre, Camilo, Suzanne J. Hand, Shawn W. Laffan, and Michael Archer. "Phylogenetic diversity, types of endemism and the evolutionary history of New World bats." Ecography 41, no. 12 (2018): 1955–66. http://dx.doi.org/10.1111/ecog.03260.

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42

Van Ranst, M., E. Morrison, J. B. Kaplan, and R. D. Burk. "Phylogenetic analysis allows classification of new HPV types based on limited sequence analysis." European Journal of Cancer and Clinical Oncology 27 (January 1991): S92. http://dx.doi.org/10.1016/0277-5379(91)91603-g.

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43

Matano, Shozo, and Hirohiko Ohta. "The phylogenetic development of vestibular nuclei in primates, related to their locomotive types." Neuroscience Research Supplements 9 (January 1989): 173. http://dx.doi.org/10.1016/0921-8696(89)90941-9.

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44

López‐Aguirre, Camilo, Suzanne J. Hand, Shawn W. Laffan, and Michael Archer. "Phylogenetic diversity, types of endemism and the evolutionary history of New World bats." Ecography 41, no. 12 (2018): 1955–66. https://doi.org/10.5281/zenodo.13452091.

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Abstract:

(Uploaded by Plazi for the Bat Literature Project) New World bats represent over one third of global bat species and encompass the widest adaptive radiation among bats. Modern bat diversity in the Americas resulted from a mixture of migrations and colonisations of different taxa throughout the Cenozoic. Traditionally, these taxa are conceived as either South or North American, based on the location of their centres of diversification. To better understand the spatial and temporal processes behind modern biogeographic patterns of New World bat fauna, we investigated phylogenetic diversity (PD)

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45

López‐Aguirre, Camilo, Suzanne J. Hand, Shawn W. Laffan, and Michael Archer. "Phylogenetic diversity, types of endemism and the evolutionary history of New World bats." Ecography 41, no. 12 (2018): 1955–66. https://doi.org/10.5281/zenodo.13452091.

Full text

Abstract:

(Uploaded by Plazi for the Bat Literature Project) New World bats represent over one third of global bat species and encompass the widest adaptive radiation among bats. Modern bat diversity in the Americas resulted from a mixture of migrations and colonisations of different taxa throughout the Cenozoic. Traditionally, these taxa are conceived as either South or North American, based on the location of their centres of diversification. To better understand the spatial and temporal processes behind modern biogeographic patterns of New World bat fauna, we investigated phylogenetic diversity (PD)

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46

López‐Aguirre, Camilo, Suzanne J. Hand, Shawn W. Laffan, and Michael Archer. "Phylogenetic diversity, types of endemism and the evolutionary history of New World bats." Ecography 41, no. 12 (2018): 1955–66. https://doi.org/10.5281/zenodo.13452091.

Full text

Abstract:

(Uploaded by Plazi for the Bat Literature Project) New World bats represent over one third of global bat species and encompass the widest adaptive radiation among bats. Modern bat diversity in the Americas resulted from a mixture of migrations and colonisations of different taxa throughout the Cenozoic. Traditionally, these taxa are conceived as either South or North American, based on the location of their centres of diversification. To better understand the spatial and temporal processes behind modern biogeographic patterns of New World bat fauna, we investigated phylogenetic diversity (PD)

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47

López‐Aguirre, Camilo, Suzanne J. Hand, Shawn W. Laffan, and Michael Archer. "Phylogenetic diversity, types of endemism and the evolutionary history of New World bats." Ecography 41, no. 12 (2018): 1955–66. https://doi.org/10.5281/zenodo.13452091.

Full text

Abstract:

(Uploaded by Plazi for the Bat Literature Project) New World bats represent over one third of global bat species and encompass the widest adaptive radiation among bats. Modern bat diversity in the Americas resulted from a mixture of migrations and colonisations of different taxa throughout the Cenozoic. Traditionally, these taxa are conceived as either South or North American, based on the location of their centres of diversification. To better understand the spatial and temporal processes behind modern biogeographic patterns of New World bat fauna, we investigated phylogenetic diversity (PD)

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48

López‐Aguirre, Camilo, Suzanne J. Hand, Shawn W. Laffan, and Michael Archer. "Phylogenetic diversity, types of endemism and the evolutionary history of New World bats." Ecography 41, no. 12 (2018): 1955–66. https://doi.org/10.5281/zenodo.13452091.

Full text

Abstract:

(Uploaded by Plazi for the Bat Literature Project) New World bats represent over one third of global bat species and encompass the widest adaptive radiation among bats. Modern bat diversity in the Americas resulted from a mixture of migrations and colonisations of different taxa throughout the Cenozoic. Traditionally, these taxa are conceived as either South or North American, based on the location of their centres of diversification. To better understand the spatial and temporal processes behind modern biogeographic patterns of New World bat fauna, we investigated phylogenetic diversity (PD)

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49

Hagiu, Bogdan-Alexandru. "Anatomo-Phylogenetic Arguments for the Production of Muscular Sports Injuries." Studia Universitatis Babeş-Bolyai Educatio Artis Gymnasticae 68, no. 3 (2023): 45–51. http://dx.doi.org/10.24193/subbeag.68(3).22.

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"The striated muscles that appeared later on the phylogenetic scale have more white, fast fibers in their composition, more sensitive to metabolic aggression. Based on the composition, phylogeny and anatomical-functional characteristics, we selected the following muscles: semitendinosus, iliac, subscapular, extensor pollicis brevis and flexor pollicis longus. The data from the specialized literature show that the respective muscles are exposed to sports injuries. In principle, one can try to prevent injuries by changing the proportions in types of muscle fibers, possibly through physical exerc

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Dan, Zhi-Cuo, De-Long Guan, Tao Jiang, Hang Wang, Lu Zhao, and Sheng-Quan Xu. "Evolution of Gene Arrangements in the Mitogenomes of Ensifera and Characterization of the Complete Mitogenome of Schizodactylus jimo." International Journal of Molecular Sciences 23, no. 20 (2022): 12094. http://dx.doi.org/10.3390/ijms232012094.

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Abstract:

Gene arrangement (relative location of genes) is another evolutionary marker of the mitogenome that can provide extensive information on the evolutionary mechanism. To explore the evolution of gene arrangements in the mitogenome of diversified Ensifera, we sequenced the mitogenome of the unique dune cricket species found in China and used it for phylogenetic analysis, in combination with 84 known Ensiferan mitogenomes. The mitogenome of Schizodactylus jimo is a 16,428-bp circular molecule that contains 37 genes. We identified eight types of gene arrangement in the 85 ensiferan mitogenomes. The

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