Relevant bibliographies by topics / Ribosomes. Proteins Eukaryotic cells

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  2. Dissertations / Theses
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  4. Book chapters
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Academic literature on the topic 'Ribosomes. Proteins Eukaryotic cells'

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Published: 4 June 2021
Last updated: 9 February 2022

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Journal articles on the topic "Ribosomes. Proteins Eukaryotic cells"

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Albanèse, Véronique, Stefanie Reissmann, and Judith Frydman. "A ribosome-anchored chaperone network that facilitates eukaryotic ribosome biogenesis." Journal of Cell Biology 189, no. 1 (2010): 69–81. http://dx.doi.org/10.1083/jcb.201001054.

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Molecular chaperones assist cellular protein folding as well as oligomeric complex assembly. In eukaryotic cells, several chaperones termed chaperones linked to protein synthesis (CLIPS) are transcriptionally and physically linked to ribosomes and are implicated in protein biosynthesis. In this study, we show that a CLIPS network comprising two ribosome-anchored J-proteins, Jjj1 and Zuo1, function together with their partner Hsp70 proteins to mediate the biogenesis of ribosomes themselves. Jjj1 and Zuo1 have overlapping but distinct functions in this complex process involving the coordinated a
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Nicchitta, Christopher V., Rachel S. Lerner, Samuel B. Stephens, Rebecca D. Dodd, and Brook Pyhtila. "Pathways for compartmentalizing protein synthesis in eukaryotic cells: the template-partitioning model." Biochemistry and Cell Biology 83, no. 6 (2005): 687–95. http://dx.doi.org/10.1139/o05-147.

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mRNAs encoding signal sequences are translated on endoplasmic reticulum (ER) - bound ribosomes, whereas mRNAs encoding cytosolic proteins are translated on cytosolic ribosomes. The partitioning of mRNAs to the ER occurs by positive selection; cytosolic ribosomes engaged in the translation of signal-sequence-bearing proteins are engaged by the signal-recognition particle (SRP) pathway and subsequently trafficked to the ER. Studies have demonstrated that, in addition to the SRP pathway, mRNAs encoding cytosolic proteins can also be partitioned to the ER, suggesting that RNA partitioning in the e
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Gerbasi, Vincent R., Connie M. Weaver, Salisha Hill, David B. Friedman, and Andrew J. Link. "Yeast Asc1p and Mammalian RACK1 Are Functionally Orthologous Core 40S Ribosomal Proteins That Repress Gene Expression." Molecular and Cellular Biology 24, no. 18 (2004): 8276–87. http://dx.doi.org/10.1128/mcb.24.18.8276-8287.2004.

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ABSTRACT Translation of mRNA into protein is a fundamental step in eukaryotic gene expression requiring the large (60S) and small (40S) ribosome subunits and associated proteins. By modern proteomic approaches, we previously identified a novel 40S-associated protein named Asc1p in budding yeast and RACK1 in mammals. The goals of this study were to establish Asc1p or RACK1 as a core conserved eukaryotic ribosomal protein and to determine the role of Asc1p or RACK1 in translational control. We provide biochemical, evolutionary, genetic, and functional evidence showing that Asc1p or RACK1 is inde
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Remacha, Miguel, Antonio Jimenez-Diaz, Cruz Santos, et al. "Proteins P1, P2, and P0, components of the eukaryotic ribosome stalk. New structural and functional aspects." Biochemistry and Cell Biology 73, no. 11-12 (1995): 959–68. http://dx.doi.org/10.1139/o95-103.

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The eukaryoic ribosomal stalk is thought to consist of the phosphoproteins P1 and P2, which form a complex with protein P0. This complex interacts at the GTPase domain in the large subunit rRNA, overlapping the binding site of the protein L11-like eukaryotic counterpart (Saccharomyces cerevisiae protein L15 and mammalian protein LI2). An unusual pool of the dephosphorylated forms of proteins P1 and P2 is detected in eukaryotic cytoplasm, and an exchange between the proteins in the pool and on the ribosome takes place during translation. Quadruply disrupted yeast strains, carrying four inactive
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Yusupova, Gulnara, and Marat Yusupov. "Crystal structure of eukaryotic ribosome and its complexes with inhibitors." Philosophical Transactions of the Royal Society B: Biological Sciences 372, no. 1716 (2017): 20160184. http://dx.doi.org/10.1098/rstb.2016.0184.

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A high-resolution structure of the eukaryotic ribosome has been determined and has led to increased interest in studying protein biosynthesis and regulation of biosynthesis in cells. The functional complexes of the ribosome crystals obtained from bacteria and yeast have permitted researchers to identify the precise residue positions in different states of ribosome function. This knowledge, together with electron microscopy studies, enhances our understanding of how basic ribosome processes, including mRNA decoding, peptide bond formation, mRNA, and tRNA translocation and cotranslational transp
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Nomura, Takaomi, Kohji Nakano, Yasushi Maki, et al. "In vitro reconstitution of the GTPase-associated centre of the archaebacterial ribosome: the functional features observed in a hybrid form with Escherichia coli 50S subunits." Biochemical Journal 396, no. 3 (2006): 565–71. http://dx.doi.org/10.1042/bj20060038.

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We cloned the genes encoding the ribosomal proteins Ph (Pyrococcus horikoshii)-P0, Ph-L12 and Ph-L11, which constitute the GTPase-associated centre of the archaebacterium Pyrococcus horikoshii. These proteins are homologues of the eukaryotic P0, P1/P2 and eL12 proteins, and correspond to Escherichia coli L10, L7/L12 and L11 proteins respectively. The proteins and the truncation mutants of Ph-P0 were overexpressed in E. coli cells and used for in vitro assembly on to the conserved domain around position 1070 of 23S rRNA (E. coli numbering). Ph-L12 tightly associated as a homodimer and bound to
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Melnikov, Sergey, Kasidet Manakongtreecheep, Keith Rivera, Arthur Makarenko, Darryl Pappin, and Dieter Söll. "Muller’s Ratchet and Ribosome Degeneration in the Obligate Intracellular Parasites Microsporidia." International Journal of Molecular Sciences 19, no. 12 (2018): 4125. http://dx.doi.org/10.3390/ijms19124125.

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Microsporidia are fungi-like parasites that have the smallest known eukaryotic genome, and for that reason they are used as a model to study the phenomenon of genome decay in parasitic forms of life. Similar to other intracellular parasites that reproduce asexually in an environment with alleviated natural selection, Microsporidia experience continuous genome decay that is driven by Muller’s ratchet—an evolutionary process of irreversible accumulation of deleterious mutations that lead to gene loss and the miniaturization of cellular components. Particularly, Microsporidia have remarkably smal
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Woellhaf, Michael W., Frederik Sommer, Michael Schroda, and Johannes M. Herrmann. "Proteomic profiling of the mitochondrial ribosome identifies Atp25 as a composite mitochondrial precursor protein." Molecular Biology of the Cell 27, no. 20 (2016): 3031–39. http://dx.doi.org/10.1091/mbc.e16-07-0513.

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Whereas the structure and function of cytosolic ribosomes are well characterized, we only have a limited understanding of the mitochondrial translation apparatus. Using SILAC-based proteomic profiling, we identified 13 proteins that cofractionated with the mitochondrial ribosome, most of which play a role in translation or ribosomal biogenesis. One of these proteins is a homologue of the bacterial ribosome-silencing factor (Rsf). This protein is generated from the composite precursor protein Atp25 upon internal cleavage by the matrix processing peptidase MPP, and in this respect, it differs fr
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Stephens, Samuel B., Rebecca D. Dodd, Joseph W. Brewer, Patrick J. Lager, Jack D. Keene, and Christopher V. Nicchitta. "Stable Ribosome Binding to the Endoplasmic Reticulum Enables Compartment-specific Regulation of mRNA Translation." Molecular Biology of the Cell 16, no. 12 (2005): 5819–31. http://dx.doi.org/10.1091/mbc.e05-07-0685.

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In eukaryotic cells, protein synthesis is compartmentalized; mRNAs encoding secretory/membrane proteins are translated on endoplasmic reticulum (ER)-bound ribosomes, whereas mRNAs encoding cytosolic proteins are translated on free ribosomes. mRNA partitioning between the two compartments occurs via positive selection: free ribosomes engaged in the translation of signal sequence-encoding mRNAs are trafficked from the cytosol to the ER. After translation termination, ER-bound ribosomes are thought to dissociate, thereby completing a cycle of mRNA partitioning. At present, the physiological basis
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Graifer, Dmitri, and Galina Karpova. "Eukaryotic protein uS19: a component of the decoding site of ribosomes and a player in human diseases." Biochemical Journal 478, no. 5 (2021): 997–1008. http://dx.doi.org/10.1042/bcj20200950.

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Proteins belonging to the universal ribosomal protein (rp) uS19 family are constituents of small ribosomal subunits, and their conserved globular parts are involved in the formation of the head of these subunits. The eukaryotic rp uS19 (previously known as S15) comprises a C-terminal extension that has no homology in the bacterial counterparts. This extension is directly implicated in the formation of the ribosomal decoding site and thereby affects translational fidelity in a manner that has no analogy in bacterial ribosomes. Another eukaryote-specific feature of rp uS19 is its essential parti
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Dissertations / Theses on the topic "Ribosomes. Proteins Eukaryotic cells"

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Rozen, Florence. "Identification and role of cap binding proteins in eukaryotic cells." Thesis, McGill University, 1989. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=74247.

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All eukaryotic cellular mRNAs (except for organelle mRNAs) are blocked at their 5$ sp prime$ end by the cap structure m$ sp7$GpppX (where X = any nucleotide). The cap structure plays a multifunctional role in both the nucleus and the cytoplasm. Two polypeptides of molecular mass of 20 and 115 kDa in HeLa nuclear extracts were shown to recognize and be crosslinked to the cap structure of eukaryotic mRNAs in a cap-dependent fashion. Their cap binding properties have been characterized, although their function in the nucleus is unknown. Previous studies have shown that cap function in the cytopla
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Metz, Anneke Maria. "Function of the wheat eukaryotic initiation factors eIF(ISO)4G and eIF4B in translation /." Digital version accessible at:, 1998. http://wwwlib.umi.com/cr/utexas/main.

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Chen, Lu-hua. "Evaluation of eIF-2 alpha phosphorylation in patients with Alzheimer's disease /." View the Table of Contents & Abstract, 2007. http://sunzi.lib.hku.hk/hkuto/record/B38284273.

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Hui, Daniel Jason. "The Mechanism of Protein Synthesis Inhibition by the P56 Family of Viral Stress Inducible Proteins." Connect to text online, 2005. http://rave.ohiolink.edu/etdc/view?acc%5Fnum=case1104848977.

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Tang, Terry, and University of Lethbridge Faculty of Arts and Science. "Mathematical modeling of eukaryotic gene expression." Thesis, Lethbridge, Alta. : University of Lethbridge, Dept. of Chemistry and Biochemistry, 2010, 2010. http://hdl.handle.net/10133/2567.

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Using the Gillespie algorithm, the export of the mRNA molecules from their transcription site to the nuclear pore complex is simulated. The effect of various structures in the nu- cleus on the efficiency of export is discussed. The results show that having some of the space filled by chromatin near the mRNA synthesis site shortens the transport time. Next, the complete eukaryotic gene expression including transcription, splicing, mRNA export, translation, and mRNA degradation is modeled using delay stochastic simulation. This allows for the study of stochastic effects during the process and on
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Quynh, Tran Hoang Thi. "Identification and functional characterization of trans-acting factors required for eukaryotic ribosome synthesis." Doctoral thesis, Universite Libre de Bruxelles, 2008. http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/210540.

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Eukaryotic ribosome synthesis is a complex process that consumes a lot of energy and involves several hundreds of trans-acting factors that transiently associate with nascent ribosomes. Biogenesis of ribosomal subunits (the small 40S and the large 60S) starts with transcription of a long precursor ribosomal RNA (pre-rRNA) by RNA polymerase I (Pol I) in the nucleolus. This is a key step that globally controls yeast ribosome synthesis. The pre-rRNA, ‘the 35S transcript’, encodes the mature sequence (18S, 5.8S, and 25S) rRNA constituents of both the 40S and 60S subunits. The 35S transcript is sub
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Leon, Ronald P. "Structural and functional analysis of MCM helicases in eukaryotic DNA replication /." Connect to full text via ProQuest. Limited to UCD Anschutz Medical Campus, 2007.

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Thesis (Ph.D. in Biophysics & Genetics, Program in Molecular Biology) -- University of Colorado Denver, 2007.<br>Typescript. Includes bibliographical references (leaves 90-98). Free to UCD affiliates. Online version available via ProQuest Digital Dissertations;
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Wen, Wenyu. "Structural characterization of proteins involved in cellular signaling and trafficking /." View abstract or full-text, 2008. http://library.ust.hk/cgi/db/thesis.pl?BICH%202008%20WEN.

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Chen, Lu-hua, та 陳璐華. "Evaluation of eIF-2α phosphorylation in patients with Alzheimer's disease". Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2007. http://hub.hku.hk/bib/B45011151.

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Lavoie, Cynthia. "The molecular and biochemical characterization of proteins involved in translation initiation in Drosophila melanogaster." Thesis, McGill University, 1995. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=29072.

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A preliminary analysis of translation initiation has been carried out using the model system Drosophila melanogaster. These efforts have focussed on identifying the homolog of mammalian of mammalian eIF-4F, a complex of three subunits; eIF-4E which binds the mRNA cap, eIF-4A which has ATP-dependent RNA helicase activity, and eIF-4$ gamma$, of unknown function. Attempts to clone the genes encoding subunits of eIF-4F have led to the isolation of two novel genes. A molecular screen for members of the DEAD family of RNA helicases that includes eIF-4A led to the isolation of a gene which encodes th
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Books on the topic "Ribosomes. Proteins Eukaryotic cells"

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K, Calderwood Stuart, Santoro M. Gabriella, and SpringerLink (Online service), eds. Prokaryotic and Eukaryotic Heat Shock Proteins in Infectious Disease. Springer Science+Business Media B.V., 2010.

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Travers, A. A. DNA-protein interactions. Chapman & Hall, 1993.

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service), ScienceDirect (Online, ed. RNA turnover in eukaryotes: Nucleases, pathways and analysis of mRNA decay. Academic, 2008.

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Bielka, Heinz. The Eukaryotic Ribosome. Springer, 2011.

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C, Conaway Ronald, and Conaway Joan Weliky, eds. Proteins in eukaryotic transcription. Elsevier Academic Press, 2004.

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W, Compans Richard, ed. Protein traffic in eukaryotic cells: Selected reviews. Springer-Verlang, 1991.

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Heat Shock Response of Eukaryotic Cells. Springer, 1985.

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Protein Traffic in Eukaryotic Cells: Selected Reviews (Current Topics in Microbiology and Immunology). Springer-Verlag, 1991.

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Protein Traffic in Eukaryotic Cells (Current Topics in Microbiology & Immunology). Springer Verlag, 1991.

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Bacterial and Eukaryotic Porins: Structure, Function, Mechanism. Wiley-VCH, 2004.

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Book chapters on the topic "Ribosomes. Proteins Eukaryotic cells"

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Kaspar, Roger L., David R. Morris, and Michael W. White. "Control of Ribosomal Protein Synthesis in Eukaryotic Cells." In Translational Regulation of Gene Expression 2. Springer US, 1993. http://dx.doi.org/10.1007/978-1-4615-2894-4_16.

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Marra, Ersilia, Sergio Giannattasio, and Ernesto Quagliariello. "In Vitro Synthesis and Import of Mitochondrial Proteins." In Organelles in Eukaryotic Cells. Springer US, 1989. http://dx.doi.org/10.1007/978-1-4613-0545-3_16.

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Hoekstra, Dick, Sinikka Eskelinen, and Jan Willem Kok. "Transport of Lipids and Proteins During Membrane Flow in Eukaryotic Cells." In Organelles in Eukaryotic Cells. Springer US, 1989. http://dx.doi.org/10.1007/978-1-4613-0545-3_5.

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Fan, Jianjun, Xiaodong Wang, Ziyi Sun, and Xiaoming Zhou. "Membrane Asymmetry and Phospholipid Translocases in Eukaryotic Cells." In Advances in Membrane Proteins. Springer Singapore, 2018. http://dx.doi.org/10.1007/978-981-13-0532-0_3.

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Bar-Peled, Maor, Diane C. Bassham, and Natasha V. Raikhel. "Transport of proteins in eukaryotic cells: more questions ahead." In Post-Transcriptional Control of Gene Expression in Plants. Springer Netherlands, 1996. http://dx.doi.org/10.1007/978-94-009-0353-1_10.

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van Bonin, Arne, Minka Breloer, and Solveig H. Moré. "Eukaryotic HSP60: A “danger signal” for T- and natural killer cells." In Heat Shock Proteins and Inflammation. Birkhäuser Basel, 2003. http://dx.doi.org/10.1007/978-3-0348-8028-2_5.

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Leontiadou, Fotini, Christina Matragkou, Filippos Kottakis, et al. "Genetic Engineering of Bacterial and Eukaryotic Ribosomal Proteins for Investigation on Elongation Arrest of Nascent Polypeptides and Cell Differentiation." In Methods in Proteome and Protein Analysis. Springer Berlin Heidelberg, 2004. http://dx.doi.org/10.1007/978-3-662-08722-0_16.

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Draetta, Giulio, Leonardo Brizuela, and David Beach. "p34, A Protein Kinase Involved in Cell Cycle Regulation in Eukaryotic Cells." In Advances in Post-Translational Modifications of Proteins and Aging. Springer US, 1988. http://dx.doi.org/10.1007/978-1-4684-9042-8_37.

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Behiels, Ester, and Jonathan Elegheert. "High-Level Production of Recombinant Eukaryotic Proteins from Mammalian Cells Using Lentivirus." In Methods in Molecular Biology. Springer US, 2021. http://dx.doi.org/10.1007/978-1-0716-1406-8_4.

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Gallwitz, Dieter, Heinz Haubruck, Constance Molenaar, et al. "Structural and Functional Analysis of ypt Proteins, a Family of ras-Related Nucleotide-Binding Proteins in Eukaryotic Cells." In The Guanine — Nucleotide Binding Proteins. Springer US, 1989. http://dx.doi.org/10.1007/978-1-4757-2037-2_25.

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Conference papers on the topic "Ribosomes. Proteins Eukaryotic cells"

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Zhang, Wujie, Jianhua Rong, Qian Wang, and Xiaoming He. "Synthesis, Cellular Uptake, and Cytotoxicity of a Thermally Responsive Nanocapsule." In ASME 2009 Summer Bioengineering Conference. American Society of Mechanical Engineers, 2009. http://dx.doi.org/10.1115/sbc2009-206872.

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Recently, polymeric nanoparticles have attracted tremendous interests as a useful tool to encapsulate therapeutic drugs, genes, and proteins for their controlled and sustained delivery. Among them, polymeric hydrogel nanoparticles with thermal and/or pH responsiveness have attracted particular attention [1]. Trehalose, a non-reducing disaccharide of glucose, has been demonstrated to be a potent, nontoxic bioprotectant for stabilizing lipids, proteins, viruses, and blood cells at cryogenic and particularly, ambient temperatures (i.e., cryo and lyopreservation) [2]. However, intracellular delive
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Ma, Liang, Meixiang Xu, and Andres F. Oberhauser. "Nanoscale Analysis of the Effect of Pathogenic Mutations on Polycystin-1." In ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology. ASMEDC, 2010. http://dx.doi.org/10.1115/nemb2010-13093.

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The activity of proteins and their complexes often involves the conversion of chemical energy (stored or supplied) into mechanical work through conformational changes. Mechanical forces are also crucial for the regulation of the structure and function of cells and tissues. Thus, the shape of eukaryotic cells is the result of cycles of mechano-sensing, mechano-transduction, and mechano-response. Recently developed single-molecule atomic force microscopy (AFM) techniques can be used to manipulate single molecules, both in real time and under physiological conditions, and are ideally suited to di
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González, Paula, Michaela Reichenzeller, Roland Eils, and Evgeny Gladilin. "Contactless Investigation of Nuclear Mechanics of Normal and Lamin Mutant Cells Using a 3D Image- and Model-Based Framework." In ASME 2009 Summer Bioengineering Conference. American Society of Mechanical Engineers, 2009. http://dx.doi.org/10.1115/sbc2009-204663.

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Apart from storing most of the DNA in eukaryotic cells, the cell nucleus provides mechanical protection through its nuclear envelope to ensure the integrity of the genome. The nuclear lamina is known to play an important role in this respect by supplying a structural framework for the nucleus [1]. The severe diseases arising from mutations in the LMNA gene confirm the importance of the lamin proteins for normal cell functionality [2]. Most experimental techniques for investigation of the cell mechanics are based on the application of external forces onto the cell boundary [3]. Thus, the quanti
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Pannekok, H., A. J. Van Zonneveid, C. J. M. de vries, M. E. MacDonald, H. Veerman, and F. Blasi. "FUNCTIONAL PROPERTIES OF DELETION-MUTANTS OF TISSUE-TYPE PLASMINOGEN ACTIVATOR." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1643724.

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Over the past twenty-five years, genetic methods have generated a wealth of information on the regulation and the structure-function relationship of bacterial genes.These methods are based on the introduction of random mutations in a gene to alter its function. Subsequently, genetic techniques cure applied to localize the mutation, while the nature of the impairedfunction could be determined using biochemical methods. Classic examples of this approach is now considered to be the elucidation of the structure and function of genes, constituting the Escherichia coli lactose (lac) and tryptophan (
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