Relevant bibliographies by topics / Mycobacterial Proteins - Structural Analysis

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  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers
  6. Reports

Academic literature on the topic 'Mycobacterial Proteins - Structural Analysis'

Author: Grafiati
Published: 4 June 2021
Last updated: 6 September 2023

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Journal articles on the topic "Mycobacterial Proteins - Structural Analysis"

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Ung, Kien Lam, Chloé Poussineau, Julie Couston, Husam M. A. B. Alsarraf, and Mickaël Blaise. "Crystal structure of MAB_4123, a putative flavin-dependent monooxygenase from Mycobacterium abscessus." Acta Crystallographica Section F Structural Biology Communications 79, no. 5 (2023): 128–36. http://dx.doi.org/10.1107/s2053230x2300345x.

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Numerous bacteria from different phylae can perform desulfurization reactions of organosulfur compounds. In these degradation or detoxification pathways, two-component flavin-dependent monooxygenases that use flavins (FMN or FAD) as a cofactor play important roles as they catalyse the first steps of these metabolic routes. The TdsC or DszC and MsuC proteins belong to this class of enzymes as they process dibenzothiophene (DBT) and methanesulfinate. Elucidation of their X-ray structures in apo, ligand-bound and cofactor-bound forms has provided important molecular insights into their catalytic
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Imkamp, Frank, Michal Ziemski, and Eilika Weber-Ban. "Pupylation-dependent and -independent proteasomal degradation in mycobacteria." Biomolecular Concepts 6, no. 4 (2015): 285–301. http://dx.doi.org/10.1515/bmc-2015-0017.

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AbstractBacteria make use of compartmentalizing protease complexes, similar in architecture but not homologous to the eukaryotic proteasome, for the selective and processive removal of proteins. Mycobacteria as members of the actinobacteria harbor proteasomes in addition to the canonical bacterial degradation complexes. Mycobacterial proteasomal degradation, although not essential during normal growth, becomes critical for survival under particular environmental conditions, like, for example, during persistence of the pathogenic Mycobacterium tuberculosis in host macrophages or of environmenta
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Herrmann, Jean Louis, Robin Delahay, Alex Gallagher, Brian Robertson, and Douglas Young. "Analysis of post-translational modification of mycobacterial proteins using a cassette expression system." FEBS Letters 473, no. 3 (2000): 358–62. http://dx.doi.org/10.1016/s0014-5793(00)01553-2.

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Watkins, Harriet A., and Edward N. Baker. "Structural and Functional Analysis of Rv3214 from Mycobacterium tuberculosis, a Protein with Conflicting Functional Annotations, Leads to Its Characterization as a Phosphatase." Journal of Bacteriology 188, no. 10 (2006): 3589–99. http://dx.doi.org/10.1128/jb.188.10.3589-3599.2006.

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ABSTRACT The availability of complete genome sequences has highlighted the problems of functional annotation of the many gene products that have only limited sequence similarity with proteins of known function. The predicted protein encoded by open reading frame Rv3214 from the Mycobacterium tuberculosis H37Rv genome was originally annotated as EntD through sequence similarity with the Escherichia coli EntD, a 4′-phosphopantetheinyl transferase implicated in siderophore biosynthesis. An alternative annotation, based on slightly higher sequence identity, grouped Rv3214 with proteins of the cofa
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Lewtak, Kinga, Paulina Czaplewska, Jerzy Wydrych, et al. "Antimycobacterial Activity of Sida hermaphrodita (L.) Rusby (Malvaceae) Seed Extract." Cells 12, no. 3 (2023): 397. http://dx.doi.org/10.3390/cells12030397.

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The current prevalence of such lifestyle diseases as mycobacteriosis and tuberculosis is a result of the growing resistance of microorganisms to the available antibiotics and their significant toxicity. Therefore, plants can successfully become a source of new therapeutic agents. The aim of this study was to investigate the effect of protein extract from Sida hermaphrodita seeds on the morphology, structure, and viability of Mycobacterium smegmatis and to carry out proteomic characterization of the protein extract. The analyses were carried out using fluorescence and transmission microscopy, a
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Damen, Merel P. M., Trang H. Phan, Roy Ummels, Alba Rubio-Canalejas, Wilbert Bitter, and Edith N. G. Houben. "Modification of a PE/PPE substrate pair reroutes an Esx substrate pair from the mycobacterial ESX-1 type VII secretion system to the ESX-5 system." Journal of Biological Chemistry 295, no. 18 (2020): 5960–69. http://dx.doi.org/10.1074/jbc.ra119.011682.

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Bacterial type VII secretion systems secrete a wide range of extracellular proteins that play important roles in bacterial viability and in interactions of pathogenic mycobacteria with their hosts. Mycobacterial type VII secretion systems consist of five subtypes, ESX-1–5, and have four substrate classes, namely, Esx, PE, PPE, and Esp proteins. At least some of these substrates are secreted as heterodimers. Each ESX system mediates the secretion of a specific set of Esx, PE, and PPE proteins, raising the question of how these substrates are recognized in a system-specific fashion. For the PE/P
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Bajpai, Urmi, Abhishek Kumar Mehta, Kandasamy Eniyan, et al. "Isolation and characterization of bacteriophages from India, with lytic activity againstMycobacterium tuberculosis." Canadian Journal of Microbiology 64, no. 7 (2018): 483–91. http://dx.doi.org/10.1139/cjm-2017-0387.

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Bacteriophages are being considered as a promising natural resource for the development of alternative strategies against mycobacterial diseases, especially in the context of the wide-spread occurrence of drug resistance among the clinical isolates of Mycobacterium tuberculosis. However, there is not much information documented on mycobacteriophages from India. Here, we report the isolation of 17 mycobacteriophages using Mycobacterium smegmatis as the bacterial host, where 9 phages also lyse M. tuberculosis H37Rv. We present detailed analysis of one of these mycobacteriophages — PDRPv. Transmi
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Schneider, Cristopher Z., Tanya Parish, Luiz A. Basso, and Diógenes S. Santos. "The Two Chorismate Mutases from both Mycobacterium tuberculosis and Mycobacterium smegmatis: Biochemical Analysis and Limited Regulation of Promoter Activity by Aromatic Amino Acids." Journal of Bacteriology 190, no. 1 (2007): 122–34. http://dx.doi.org/10.1128/jb.01332-07.

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ABSTRACT Chorismate mutase (CM) catalyzes the rearrangement of chorismate to prephenate in the biosynthetic pathway that forms phenylalanine and tyrosine in bacteria, fungi, plants, and apicomplexan parasites. Since this enzyme is absent from mammals, it represents a promising target for the development of new antimycobacterial drugs, which are needed to combat Mycobacterium tuberculosis, the causative agent of tuberculosis. Until recently, two putative open reading frames (ORFs), Rv0948c and Rv1885c, showing low sequence similarity to CMs have been described as “conserved hypothetical protein
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Gangwar, Shanti P., Sita R. Meena, and Ajay K. Saxena. "Comparison of four different crystal forms of theMycobacterium tuberculosisESX-1 secreted protein regulator EspR." Acta Crystallographica Section F Structural Biology Communications 70, no. 4 (2014): 433–37. http://dx.doi.org/10.1107/s2053230x14004166.

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TheMycobacterium tuberculosisESX-1 secreted protein regulator (EspR, Rv3849) is the key protein that delivers bacterial proteins into the host cell during mycobacterial infection. EspR binds directly to theespACDoperon and is involved in transcriptional activation. In the current study,M. tuberculosisEspR has been crystallized and its X-ray structure has been determined at 3.3 Å resolution in aP3221 crystal form. EspR forms a physiological dimer in the crystal. Each EspR monomer contains an N-terminal helix–turn–helix DNA-binding domain and a C-terminal dimerization domain. The EspR structure
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Sandhu, Padmani, Monika Kumari, Kamal Naini, and Yusuf Akhter. "Genome scale identification, structural analysis, and classification of periplasmic binding proteins from Mycobacterium tuberculosis." Current Genetics 63, no. 3 (2016): 553–76. http://dx.doi.org/10.1007/s00294-016-0664-5.

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Dissertations / Theses on the topic "Mycobacterial Proteins - Structural Analysis"

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Castell, Alina. "Fighting Tuberculosis – : Structural Studies of Three Mycobacterial Proteins." Doctoral thesis, Uppsala universitet, Strukturell molekylärbiologi, 2008. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-9348.

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This thesis presents the cloning, purification, crystallization, and structural studies of two unknown proteins from Mycobacterium tuberculosis, and of an aminotransferase from Mycobacterium smegmatis. Structural knowledge of these proteins is of highest interest for structure-based drug design, which is one of the approaches that can be used in order to fight tuberculosis (TB). The structure of the conserved hypothetical protein Rv0216 was refined to a resolution of 1.9 Å. The structure exhibits a so-called double hotdog-fold, similar to known hydratases. However, only parts of the hydratase
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Boonzaier, Jeremy. "Structural Analysis of Induced Mutagenesis Protein B from Mycobacterium tuberculosis Jeremy." University of the Western Cape, 2016. http://hdl.handle.net/11394/5720.

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Magister Scientiae - MSc (Biotechnology)<br>Knowing the three-dimensional structure of a protein may be useful in understanding its function. In this study, induced mutagenesis protein B (ImuB) from Mycobacterium tuberculosis was analyzed using molecular biology and molecular modelling techniques. The Rv3394c gene expressing ImuB was obtained from the group of Prof. Digby Warner at the Institute of Infectious Diseases and Molecular Medicine, University of Cape Town. Rv33974c was amplified from an expression plasmid using polymerase chain reaction (PCR) and inserted into multiple expression vec
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Kochva, Uzi. "Structural analysis of integral membrane proteins." E-thesis Full text (Hebrew University users only), 2007. http://shemer.mslib.huji.ac.il/dissertations/H/JSL/001449168.pdf.

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Siu, Wing-yan, and 蕭穎欣. "Multiple structural alignment for proteins." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2008. http://hub.hku.hk/bib/B4068748X.

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Anye, Valentine. "Structural analysis of induced mutagenesis A’ protein from mycobacterium tuberculosis and of a thermophillic GH9 cellulase." University of the Western Cape, 2014. http://hdl.handle.net/11394/4320.

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Masters of Science<br>The three-dimensional structures of proteins are important in understanding their function and interaction with ligands and other proteins. In this work, the structures of two proteins, ImuA’ from mycobacterium tuberculosis and GH9 C1 cellulase from a metagenomic library, were analysed using structural biological and modelling techniques. The gene encoding ImuA’ was amplified by two-step PCR, cloned, and expressed in E. coli. The recombinant ImuA’ produced was found to be largely insoluble. The insoluble protein was successfully solubilized in 8M urea but refolding the pr
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Berkowitz, Cheryl Anne. "Analysis of the structural proteins of rubella virus." Thesis, University of British Columbia, 1988. http://hdl.handle.net/2429/27798.

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Complications of rubella virus infection, including congenital rubella syndrome and the association of rubella virus with joint inflammation, emphasize the need for continued research on rubella virus. The finding that the association of rubella virus infection with joint manifestations is more pronounced with wild strains than with vaccine strains suggested the possibility of strain variation. Several different techniques have been employed in order to compare six rubella virus strains and identify variations in their structural proteins. Differences in biological activities were detected, i
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Hahn, Young Shin Lim Strauss James H. Strauss James H. "Functional analysis of viral nonstructural and structural proteins /." Diss., Pasadena, Calif. : California Institute of Technology, 1989. http://resolver.caltech.edu/CaltechETD:etd-06072007-075259.

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Dinis, Pedro Cleto Esteves Guerreiro. "Structural analysis of proteins from the radical SAM superfamily." Thesis, University of Southampton, 2016. https://eprints.soton.ac.uk/387225/.

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The Radical SAM superfamily is a large group of enzymes which use an iron‐sulfur cluster to catalyse the reductive cleavage of S‐adenosylmethionine (SAM), resulting in the formation of a highly reactive intermediate. This potent oxidant is used to functionalise relatively inert substrates to catalyse an extensive role of reactions: cofactor biosynthesis; anaerobic metabolism; methylation and post‐translational modifications. Most members of this family share some structural similarities, most notably a [4Fe‐4S] cluster, coordinated by a cysteine triad motif; some conserved motifs for the bindi
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Stahl, Morgan A. "The Perilipin Family of Proteins: Structural and Bioinformatic Analysis." Otterbein University Honors Theses / OhioLINK, 2005. http://rave.ohiolink.edu/etdc/view?acc_num=otbnhonors1620460421392971.

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Yarbrough, Daniel Kenneth. "Structural and mutational analysis of chromophore maturation in long wavelength fluorescent proteins /." view abstract or download file of text, 2004. http://wwwlib.umi.com/cr/uoregon/fullcit?p3120630.

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Thesis (Ph. D.)--University of Oregon, 2004.<br>Typescript. Includes vita and abstract. Includes bibliographical references (leaves 142-152). Also available for download via the World Wide Web; free to University of Oregon users.
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Books on the topic "Mycobacterial Proteins - Structural Analysis"

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Mus-Veteau, Isabelle, ed. Membrane Proteins Production for Structural Analysis. Springer New York, 2014. http://dx.doi.org/10.1007/978-1-4939-0662-8.

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Mus-Veteau, Isabelle. Membrane proteins production for structural analysis. Springer, 2014.

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M, Hatano, ed. Protein structural analysis, folding, and design. Japan Scientific Societies Press, 1990.

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Thermostable proteins: Structural stability and design. Taylor & Francis, 2012.

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Andreeva, Alla Michailovna. Structural and functional organization of fish blood proteins. Nova Science, 2011.

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A, Crommelin D. J., ed. Methods for structural analysis of protein pharmaceuticals / Wim Jiskoot, Daan J.A. Crommelin. AAPS Press, 2005.

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Thermostable proteins: Structural stability and design. CRC Press, 2012.

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Karlsson, Jenny. Functional and structural analysis of the membrane domain of proton-translocating Escherichia coli Transhydrogenase. Department of Chemistry, Biochemistry and Physices, Göteborg University, 2006.

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Kurt, Wüthrich, ed. NMR in structural biology: A collection of papers by Kurt Wüthrich. World Scientific, 1995.

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J, Quinn Peter, and Cherry Richard J, eds. Structural and dynamic properties of lipids and membranes. Portland Press, 1992.

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Book chapters on the topic "Mycobacterial Proteins - Structural Analysis"

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Lucas, Megan C., Lisa M. Wolfe, Rachel M. Hazenfield, et al. "Fractionation and Analysis of Mycobacterial Proteins." In Methods in Molecular Biology. Springer New York, 2015. http://dx.doi.org/10.1007/978-1-4939-2450-9_4.

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Marshak, Daniel R. "Structural Analysis of Proteins of the Nervous System." In Proteins. Springer US, 1987. http://dx.doi.org/10.1007/978-1-4613-1787-6_29.

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Shively, John E. "Structural Analysis of Membrane Proteins." In Methods in Protein Sequence Analysis. Birkhäuser Basel, 1991. http://dx.doi.org/10.1007/978-3-0348-5678-2_8.

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Jaenicke, R. "Structural analysis of membrane proteins." In Biochemistry of Cell Membranes. Birkhäuser Basel, 1995. http://dx.doi.org/10.1007/978-3-0348-9057-1_20.

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Fraser, Blair A. "Fast Atom Bombardment Mass Spectrometry: Application to Peptide Structural Analysis." In Proteins. Springer US, 1987. http://dx.doi.org/10.1007/978-1-4613-1787-6_26.

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Paxton, Raymond J., and John E. Shively. "Structural Analysis of Carcinoembryonic Antigen (CEA) and a Related Tumor-Associated Antigen (TEX)." In Proteins. Springer US, 1987. http://dx.doi.org/10.1007/978-1-4613-1787-6_71.

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Mus-Veteau, Isabelle, Pascal Demange, and Francesca Zito. "Membrane Protein Production for Structural Analysis." In Membrane Proteins Production for Structural Analysis. Springer New York, 2014. http://dx.doi.org/10.1007/978-1-4939-0662-8_1.

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Hawe, Andrea, Sandipan Sinha, Wolfgang Friess, and Wim Jiskoot. "Structural Analysis of Proteins in Dried Matrices." In Formulation and Process Development Strategies for Manufacturing Biopharmaceuticals. John Wiley & Sons, Inc., 2010. http://dx.doi.org/10.1002/9780470595886.ch22.

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Fritz, Günter. "X-ray Structural Analysis of S100 Proteins." In Methods in Molecular Biology. Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-230-8_6.

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Daughdrill, Gary W. "Determining Structural Ensembles for Intrinsically Disordered Proteins." In Instrumental Analysis of Intrinsically Disordered Proteins. John Wiley & Sons, Inc., 2010. http://dx.doi.org/10.1002/9780470602614.ch5.

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Conference papers on the topic "Mycobacterial Proteins - Structural Analysis"

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Dittmer, Neal T. "Structural analysis on insect cuticular proteins." In 2016 International Congress of Entomology. Entomological Society of America, 2016. http://dx.doi.org/10.1603/ice.2016.94546.

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Cho, Young-Rae. "Topological analysis of structural roles of proteins in interactome networks." In the First ACM International Conference. ACM Press, 2010. http://dx.doi.org/10.1145/1854776.1854886.

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Li, Ting, Herbert L. Bonkovsky, and Jun-tao Guo. "Structural analysis of heme proteins: Implication for design and prediction." In 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW). IEEE, 2010. http://dx.doi.org/10.1109/bibmw.2010.5703932.

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Ivanova, Desislava, and Yuliana Staeva. "Structural similarity analysis of SARS-CoV-2 and human proteins." In “TOPICAL ISSUES OF THERMOPHYSICS, ENERGETICS AND HYDROGASDYNAMICS IN THE ARCTIC CONDITIONS”: Dedicated to the 85th Birthday Anniversary of Professor E. A. Bondarev. AIP Publishing, 2022. http://dx.doi.org/10.1063/5.0100629.

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Jagodzinski, F., J. Hardy, and I. Streinu. "Using rigidity analysis to probe mutation-induced structural changes in proteins." In 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW). IEEE, 2011. http://dx.doi.org/10.1109/bibmw.2011.6112410.

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Zervou, M. A., E. Doutsi, P. Pavlidis, and P. Tsakalides. "Efficient Dynamic Analysis of Low-similarity Proteins for Structural Class Prediction." In 2020 28th European Signal Processing Conference (EUSIPCO). IEEE, 2021. http://dx.doi.org/10.23919/eusipco47968.2020.9287619.

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Kazmerchuk, A. D., E. V. Snytkov, and B. A. Tonkonogov. "SOFTWARE SYSTEM PROJECT FOR PROTEINS’ INTERACTION ANALYSIS UNDER CONDITIONS OF WEAK STRUCTURAL SIMILARITY." In SAKHAROV READINGS 2022: ENVIRONMENTAL PROBLEMS OF THE XXI CENTURY. International Sakharov Environmental Institute of Belarusian State University, 2022. http://dx.doi.org/10.46646/sakh-2022-2-419-422.

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Practical purpose, functioning algorithm, architecture, technologies and means of implementation, functionality and testing of software system project for proteins’ interaction analysis under conditions of weak structural similarity, based on bioinformatics technologies, implementing computational methods and mathematical models at various computational levels and allowing making research decisions in various fields of biology and medicine are considered.
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Gerasimova, E. O., A. V. Tretyakova, and P. A. Krylov. "Bioinformatic analysis of structural and functional properties of proteins of the surface zone and surfactant-associated proteins." In Mathematical Biology and Bioinformatics. IMPB RAS - Branch of KIAM RAS, 2022. http://dx.doi.org/10.17537/icmbb22.21.

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"Large scale clustering in structural and evolutionary analysis of SARS-CoV-2 proteins." In Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB-2022) :. Institute of Cytology and Genetics, the Siberian Branch of the Russian Academy of Sciences, 2022. http://dx.doi.org/10.18699/sbb-2022-519.

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Osbin, K., Manuel Jayan, S. Bhadrakumari, and P. Predeep. "Solubilization of spider silk proteins and its structural analysis using Fourier transform infrared spectroscopy." In LET THERE BE LIGHT: Reflections of a Congress on Light. Author(s), 2017. http://dx.doi.org/10.1063/1.4984189.

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Reports on the topic "Mycobacterial Proteins - Structural Analysis"

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Bercovier, Herve, Raul Barletta, and Shlomo Sela. Characterization and Immunogenicity of Mycobacterium paratuberculosis Secreted and Cellular Proteins. United States Department of Agriculture, 1996. http://dx.doi.org/10.32747/1996.7573078.bard.

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Our long-term goal is to develop an efficient acellular vaccine against paratuberculosis based on protein antigen(s). A prerequisite to achieve this goal is to analyze and characterize Mycobacterium paratuberculosis (Mpt) secreted and cellular proteins eliciting a protective immune response. In the context of this general objective, we proposed to identify, clone, produce, and characterize: the Mpt 85B antigen and other Mpt immunoreactive secreted proteins, the Mpt L7/L12 ribosomal protein and other immunoreactive cellular proteins, Mpt protein determinants involved in invasion of epithelial c
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Morrison, Mark, Joshuah Miron, Edward A. Bayer, and Raphael Lamed. Molecular Analysis of Cellulosome Organization in Ruminococcus Albus and Fibrobacter Intestinalis for Optimization of Fiber Digestibility in Ruminants. United States Department of Agriculture, 2004. http://dx.doi.org/10.32747/2004.7586475.bard.

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Improving plant cell wall (fiber) degradation remains one of the highest priority research goals for all ruminant enterprises dependent on forages, hay, silage, or other fibrous byproducts as energy sources, because it governs the provision of energy-yielding nutrients to the host animal. Although the predominant species of microbes responsible for ruminal fiber degradation are culturable, the enzymology and genetics underpinning the process are poorly defined. In that context, there were two broad objectives for this proposal. The first objective was to identify the key cellulosomal component
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Christopher, David A., and Avihai Danon. Plant Adaptation to Light Stress: Genetic Regulatory Mechanisms. United States Department of Agriculture, 2004. http://dx.doi.org/10.32747/2004.7586534.bard.

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Original Objectives: 1. Purify and biochemically characterize RB60 orthologs in higher plant chloroplasts; 2. Clone the gene(s) encoding plant RB60 orthologs and determine their structure and expression; 3. Manipulate the expression of RB60; 4. Assay the effects of altered RB60 expression on thylakoid biogenesis and photosynthetic function in plants exposed to different light conditions. In addition, we also examined the gene structure and expression of RB60 orthologs in the non-vascular plant, Physcomitrella patens and cloned the poly(A)-binding protein orthologue (43 kDa RB47-like protein).
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