Relevant bibliographies by topics / Phylogenetic types

Contents

  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers
  6. Reports

Academic literature on the topic 'Phylogenetic types'

Author: Grafiati
Published: 2 June 2025
Last updated: 31 July 2025

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Journal articles on the topic "Phylogenetic types"

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Barker, R. M., G. M. Kearney, P. Nicholson, A. L. Blair, R. C. Porter, and P. B. Crichton. "Types of Salmonella paratyphi B and their phylogenetic significance." Journal of Medical Microbiology 26, no. 4 (1988): 285–93. http://dx.doi.org/10.1099/00222615-26-4-285.

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PARENTI, LYNNE R. "The phylogenetic significance of bone types in euteleost fishes." Zoological Journal of the Linnean Society 87, no. 1 (1986): 37–51. http://dx.doi.org/10.1111/j.1096-3642.1986.tb01329.x.

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Wingfield, Allison. "Understanding Human Papillomavirus Types and Significance Through Phylogenetic Trees." American Journal of Clinical Pathology 150, suppl_1 (2018): S77. http://dx.doi.org/10.1093/ajcp/aqy094.186.

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Liggett, Thomas M., and Rinaldo B. Schinazi. "A Stochastic Model for Phylogenetic Trees." Journal of Applied Probability 46, no. 2 (2009): 601–7. http://dx.doi.org/10.1239/jap/1245676110.

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We propose the following simple stochastic model for phylogenetic trees. New types are born and die according to a birth and death chain. At each birth we associate a fitness to the new type sampled from a fixed distribution. At each death the type with the smallest fitness is killed. We show that if the birth (i.e. mutation) rate is subcritical, we obtain a phylogenetic tree consistent with an influenza tree (few types at any given time and one dominating type lasting a long time). When the birth rate is supercritical, we obtain a phylogenetic tree consistent with an HIV tree (many types at a
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Liggett, Thomas M., and Rinaldo B. Schinazi. "A Stochastic Model for Phylogenetic Trees." Journal of Applied Probability 46, no. 02 (2009): 601–7. http://dx.doi.org/10.1017/s0021900200005684.

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We propose the following simple stochastic model for phylogenetic trees. New types are born and die according to a birth and death chain. At each birth we associate a fitness to the new type sampled from a fixed distribution. At each death the type with the smallest fitness is killed. We show that if the birth (i.e. mutation) rate is subcritical, we obtain a phylogenetic tree consistent with an influenza tree (few types at any given time and one dominating type lasting a long time). When the birth rate is supercritical, we obtain a phylogenetic tree consistent with an HIV tree (many types at a
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Ahmed, Mohammed, and Oleksandr Holovachov. "Twenty Years after De Ley and Blaxter—How Far Did We Progress in Understanding the Phylogeny of the Phylum Nematoda?" Animals 11, no. 12 (2021): 3479. http://dx.doi.org/10.3390/ani11123479.

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Molecular phylogenetics brought radical changes to our understanding of nematode evolution, resulting in substantial modifications to nematode classification implemented by De Ley and Blaxter and widely accepted now. Numerous phylogenetic studies were subsequently published that both improved and challenged this classification. Here we present a summary of these changes. We created cladograms that summarise phylogenetic relationships within Nematoda using phylum-wide to superfamily-wide molecular phylogenies published in since 2005, and supplemented with the phylogenetic analyses for Enoplia a
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Giebler, Julia, Lukas Y. Wick, Michael Schloter, Hauke Harms, and Antonis Chatzinotas. "Evaluating the Assignment ofalkBTerminal Restriction Fragments and Sequence Types to Distinct Bacterial Taxa." Applied and Environmental Microbiology 79, no. 9 (2013): 3129–32. http://dx.doi.org/10.1128/aem.04028-12.

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ABSTRACTSequence and terminal restriction fragment length polymorphism (T-RFLP) analyses revealed multiplealkBgene copies/cell in soil bacterial isolates and an apparently high genetic mobility among various phylogenetic groups. Identifying alkane degraders byalkBterminal restriction fragments (T-RFs) and sequences is strongly biased, as the phylogenetic trees based on 16S rRNA andalkBgene sequences were highly inconsistent.
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Bernard, Hans-Ulrich, Itzel E. Calleja-Macias, and S. Terence Dunn. "Genome variation of human papillomavirus types: Phylogenetic and medical implications." International Journal of Cancer 118, no. 5 (2005): 1071–76. http://dx.doi.org/10.1002/ijc.21655.

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Mavrodiev, Evgeny V., and Nicholas E. Mavrodiev. "Essays on the Binary Representations of the DNA Data." DNA 5, no. 1 (2025): 10. https://doi.org/10.3390/dna5010010.

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The advancement of modern genomics has led to the large-scale industrial production of molecular data and scientific outcomes. Simultaneously, conventional DNA character alignments (sequence alignments) are utilized for DNA-based phylogenetic analyses without further recoding procedures or any a priori determination of character polarity, contrary to the requirements of foundations of phylogenetic systematics. These factors are the primary reasons why the binary perspective has not been implemented in modern molecular phylogenetics. In this study, we demonstrate how to recode conventional DNA
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Ali, Munim Radwan. "Phylogenetic Groups and Antibiotic Resistance Characteristics of Uropathogenic Escherichia coli." Journal of Communicable Diseases 55, no. 01 (2023): 36–44. http://dx.doi.org/10.24321/0019.5138.202306.

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Background:Different phylogenetic groups of uropathogenic Escherichia coli are associated with increased virulence and multidrug resistance, highlighting the importance of understanding the genetic characteristics of these isolates for effective treatment and prevention of UTIs. Genomic analysis was conducted on 100 Escherichia coli isolates obtained from multiple hospitals in Baghdad, Iraq, which showed extensive resistance to multiple drugs, including both multi-drug resistant (MDR) and extensively-drug resistant (XDR) isolates. Methodology: Antibiotic susceptibility was evaluated using the
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Dissertations / Theses on the topic "Phylogenetic types"

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Peters, Andrew. "Clinical, molecular, and phylogenetic characterisations of human T-cell lymphotropic virus types I and II in Canada." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 2000. http://www.collectionscanada.ca/obj/s4/f2/dsk1/tape2/PQDD_0020/MQ58073.pdf.

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Vieira, Pedro Rates. "Efeitos funcionais e filogenéticos nas relações entre forófitos e epífetos vasculares." reponame:Biblioteca Digital de Teses e Dissertações da UFRGS, 2012. http://hdl.handle.net/10183/144069.

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Os padrões de associação entre epífitos e forófitos não podem ser considerados espécie-específicos, mas as árvores que os epífitos colonizam também não são um conjunto aleatório das espécies forofíticas de um determinado local. Ao invés disso, parece haver uma preferência de certos epífitos por diferentes forófitos. No entanto, se conhece pouco sobre os fatores que determinam essa preferência. Nosso objetivo nesse trabalho é avaliar como os atributos funcionais e a filogenia dos epífitos vasculares influenciam na associação dos epífitos com os forófitos em uma Floresta Ombrófila Mista no sul d
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Ait, Khaled. "Sequence analysis of human immunodeficiency virus type 1 : a cross-sectional and longitudinal study." Thesis, University College London (University of London), 1996. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.244731.

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Yamada, Shunsuke. "Phylogenetic relationship of prophages is affected by CRISPR selection in Group A Streptococcus." Kyoto University, 2019. http://hdl.handle.net/2433/242419.

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Torriani, Stefano. "The mitochondrial genome of the ascomycete Rhynchosporium secalis: DNA sequences, gene composition and phylogenetic analysis." Zurich : ETH Zurich, Switzerland, Phytopathology Group, Institute of Plant Sciences, 2004. http://e-collection.ethbib.ethz.ch/show?type=dipl&nr=157.

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Freimoser, Florian M. Freimoser Florian Matthias. "Cultivation, sporulation and phylogenetic analysis of Neozygites parvispora and Entomophthora thripidum, two fungal pathogens of thrips /." [S.l.] : [s.n.], 2000. http://e-collection.ethbib.ethz.ch/show?type=diss&nr=13869.

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Li, Yick-yeung, and 李亦揚. "Molecular and phylogenetic analysis of porcine reproductive and respiratory syndrome virus (PRRSV) and porcine circovirus type 2(PCV2)." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2003. http://hub.hku.hk/bib/B29297102.

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Gonçalves, Paula Fernanda. "Caracterização genômica de um vírus dengue tipo 3, isolado de paciente com dengue clássico." Universidade de São Paulo, 2007. http://www.teses.usp.br/teses/disponiveis/60/60135/tde-01042009-090555/.

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Dengue é uma doença infecciosa não contagiosa causada pelo vírus da dengue (gênero Flavivirus, família Flaviviridae), transmitida pela picada de artrópodes do gênero Aedes, principalmente Aedes aegypti, e sendo atualmente um importante problema de saúde pública em todo o mundo. Segundo a Organização Mundial de Saúde, cerca de 50 a 100 milhões de pessoas se infectam anualmente em mais de 100 países de todos os continentes. A dengue apresenta-se em três formas clínicas principais; doença febril indiferenciada, febre clássica do dengue (DF) e dengue hemorrágico com ou sem choque (DHF/DSS). Recent
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Debastiani, Vanderlei Julio. "Sinal filogenético e conservação filogenética de nicho : integrando métodos aos conceitos ecológicos." reponame:Biblioteca Digital de Teses e Dissertações da UFRGS, 2016. http://hdl.handle.net/10183/143857.

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Compreender os fatores que afetam a distribuição das espécies tem sido um dos principais objetivos dos ecólogos. Atualmente, sabe-se que os processos ecológicos e evolutivos moldam a dinâmica de especiação e extinção de espécies, e determinam a distribuição e abundância das mesmas. Ao longo dos últimos anos, tem havido um aumento no número de estudos que utilizam informação filogenética para explicar as dinâmicas populacionais e as distribuições de espécies, e que buscam identificar os mecanismos responsáveis pela montagem das comunidades. Interações das espécies, sejam elas intraespecífica, i
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Soares, Leonor Brites. "Morfological and molecular variation of afroablepharus africanus (Gray,1845)." Master's thesis, Universidade de Évora, 2015. http://hdl.handle.net/10174/17524.

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The Guinea Lidless Skink, Afroablepharus africanus (Gray, 1845), occurs in the islands of São Tomé and Príncipe. These islands are known for harbouring an extremely rich biodiversity, with high levels of endemism. Many recent studies have shed lights on the still unknown biodiversity of these islands, resulting in the identification of many cryptic lineages and new species to science. The case of the Guinea Lidless skink has been studied several years ago by Jesus et al. (2007). Based on molecular data, the authors found that each island population belong to different lineages, being considera
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Books on the topic "Phylogenetic types"

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Gu, Xun. Statistical Analysis of Molecular and Genomic Evolution. Oxford University PressOxford, 2024. http://dx.doi.org/10.1093/oso/9780198816515.001.0001.

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Abstract This book introduces up-to-date methods in statistics and bioinformatics for the study of molecular and genome evolution. It first provides a concise overview of molecular evolutionary analysis and phylogenetic inference. The following chapters cover four research themes: evolution of protein functionality and functional divergence (Chapters 3 and 4); effective gene pleiotropy estimation under the genotype-phenotype mapping model of protein evolution (Chapter 5); evolution of genetic robustness after gene duplication (Chapter 6), and the statistical models of transcriptome evolution (
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Lyman, R. Lee. Graphing Culture Change in North American Archaeology. Oxford University Press, 2021. http://dx.doi.org/10.1093/oso/9780198871156.001.0001.

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Documentation, analysis, and explanation of culture change have long been goals of archaeology. The earliest archaeological spindle graphs appeared in the 1880s and 1890s, but had no influence on subsequent archaeologists. Line graphs showing change in frequencies of specimens in each of several artifact types were used in the 1910s and 1920s. Seriograms or straight-sided spindles diagraming interpretations of culture change were published in the 1930s, but were seldom subsequently mimicked. Spindle graphs of centered and stacked columns of bars, each column representing a distinct artifact ty
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Bilański, Piotr. Trypodendron laeve Eggers w Polsce na tle wybranych aspektów morfologicznych i genetycznych drwalników (Trypodendron spp., Coleoptera, Curculionidae, Scolytinae). Publishing House of the University of Agriculture in Krakow, 2019. http://dx.doi.org/10.15576/978-83-66602-38-0.

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In Poland, there are 4 species of the liypodendron genus: T lineaium Oliv., T domestkum L., T signature Fakir. and 7: laeve Egg. Trypodendron laeve is the leastknown of this group. Many factors had influence on the state of research on this species, including taxonomic aspects. Taking into account the unsatisfactory state of knowledge regarding the prevalence of T iaeve in Poland, as well as scarce information on the morphology of this species, research was undertaken to I) document the presence, including new sites, of T laeve in Poland and define, if possible, the habitat and trophic conditi
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Alexander, D. J., N. Phin, and M. Zuckerman. Influenza. Edited by I. H. Brown. Oxford University Press, 2011. http://dx.doi.org/10.1093/med/9780198570028.003.0037.

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Influenza is a highly infectious, acute illness which has affected humans and animals since ancient times. Influenza viruses form the Orthomyxoviridae family and are grouped into types A, B, and C on the basis of the antigenic nature of the internal nucleocapsid or the matrix protein. Infl uenza A viruses infect a large variety of animal species, including humans, pigs, horses, sea mammals, and birds, occasionally producing devastating pandemics in humans, such as in 1918 when it has been estimated that between 50–100 million deaths occurred worldwide.There are two important viral surface glyc
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Book chapters on the topic "Phylogenetic types"

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Nair, Nishanth Ulhas, Yu Lin, Philipp Bucher, and Bernard M. E. Moret. "Phylogenetic Analysis of Cell Types Using Histone Modifications." In Lecture Notes in Computer Science. Springer Berlin Heidelberg, 2013. http://dx.doi.org/10.1007/978-3-642-40453-5_25.

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Lammers, Lars, Do Tran Van, Tom M. W. Nye, and Stephan F. Huckemann. "Types of Stickiness in BHV Phylogenetic Tree Spaces and Their Degree." In Lecture Notes in Computer Science. Springer Nature Switzerland, 2023. http://dx.doi.org/10.1007/978-3-031-38271-0_35.

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Ferraguti, Marco, and Christer Erséus. "Sperm types and their use for a phylogenetic analysis of aquatic clitellates." In Reproductive Strategies and Developmental Patterns in Annelids. Springer Netherlands, 1999. http://dx.doi.org/10.1007/978-94-017-2887-4_13.

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Ferraguti, Marco, Christer Erséus, Irina Kaygorodova, and Patrick Martin. "New sperm types in Naididae and Lumbriculidae (Annelida: Oligochaeta) and their possible phylogenetic implications." In Aquatic Oligochaetes. Springer Netherlands, 1999. http://dx.doi.org/10.1007/978-94-011-4207-6_21.

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Ramon-Mateu, Julia, Allison Edgar, Dorothy Mitchell, and Mark Q. Martindale. "Studying Ctenophora WBR Using Mnemiopsis leidyi." In Methods in Molecular Biology. Springer US, 2022. http://dx.doi.org/10.1007/978-1-0716-2172-1_5.

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AbstractCtenophores, also known as comb jellies, are a clade of fragile holopelagic, carnivorous marine invertebrates, that represent one of the most ancient extant groups of multicellular animals. Ctenophores show a remarkable ability to regenerate in the adult form, being capable of replacing all body parts (i.e., whole-body regeneration) after loss/amputation. With many favorable experimental features (optical clarity, stereotyped cell lineage, multiple cell types), a full genome sequence available and their early branching phylogenetic position, ctenophores are well placed to provide infor
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Tahiri, Nadia, and Aleksandr Koshkarov. "New Metrics for Classifying Phylogenetic Trees Using K-means and the Symmetric Difference Metric." In Studies in Classification, Data Analysis, and Knowledge Organization. Springer International Publishing, 2023. http://dx.doi.org/10.1007/978-3-031-09034-9_41.

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AbstractThe k-means method can be adapted to any type of metric space and is sometimes linked to the median procedures. This is the case for symmetric difference metric (or Robinson and Foulds) distance in phylogeny, where it can lead to median trees as well as to Euclidean Embedding. We show how a specific version of the popular k-means clustering algorithm, based on interesting properties of the Robinson and Foulds topological distance, can be used to partition a given set of trees into one (when the data is homogeneous) or several (when the data is heterogeneous) cluster(s) of trees. We hav
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Göker, Markus. "What can genome analysis offer for bacteria?" In Trends in the systematics of bacteria and fungi. CABI, 2021. http://dx.doi.org/10.1079/9781789244984.0255.

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Abstract This book chapter is organized as follows: (i) the main approaches to the philosophy of taxonomic classification are recapitulated; (ii) the paradigm of polyphasic taxonomy is discussed in this context; (iii) the causes of conflict between previous classifications and genome-scale analyses are investigated, using examples from recent phylum-wide studies, with a discussion of how markers used in polyphasic taxonomy can be replaced by genome-derived ones; and (iv) the challenges in assigning taxonomic ranks using genome-scale or other data are revisited. The conclusion assesses the chan
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Dopazo, Joaquín, Huaichun Wang, and José María Carazo. "A new type of unsupervised growing neural network for biological sequence classification that adopts the topology of a phylogenetic tree." In Biological and Artificial Computation: From Neuroscience to Technology. Springer Berlin Heidelberg, 1997. http://dx.doi.org/10.1007/bfb0032553.

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Cadotte, Marc W., and T. Jonathan Davies. "Phylogenetic Diversity across Space and Time." In Phylogenies in Ecology. Princeton University Press, 2016. http://dx.doi.org/10.23943/princeton/9780691157689.003.0007.

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This chapter examines how phylogenetic diversity changes across spatial and temporal gradients. Spatial ecophylogenetic patterns can reveal how different processes shape ecological communities. Metacommunity ecology reinvigorated the search for general mechanisms that create diversity and structural differences among communities, and by using phylogenetic patterns we can understand how shared traits and evolution inform community differences. The chapter first considers phylobetadiversity as a measure of phylogenetic turnover before discussing two types of phylobetadiversity metrics, diversity
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Ligon, J. David. "Phylogenetic studies of reproductive patterns." In The Evolution of Avian Breeding Systems. Oxford University PressOxford, 1999. http://dx.doi.org/10.1093/oso/9780198549130.003.0007.

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Abstract The classic studies by Lorenz (1941) on ducks first demonstrated that behavioural traits of birds may conform closely to morphological ones, and that behaviour, like morphology, can reflect phylogenetic history. A recent example is seen in the study by Kennedy et al. (1996) of the relationship between social displays and phylogeny in the Order Pelecaniformes. David Winkler and Frederick Sheldon (1993) make this point in a novel way by demonstrating that nests of swallows parallel their phylogeny (Fig. 7.1). As a group, swallows show a great diversity of nest types, from burrows to cav
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Conference papers on the topic "Phylogenetic types"

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Yakovchuk, E. V., E. Yu Shustova, and L. I. Kozlovskaya. "MOLECULAR AND GENETIC CHARACTERISTICS OF ENTEROVIRUSES ASSOCIATED WITH CASES OF SEROUS MENINGITIS IN 2023 IN THE RUSSIAN FEDERATION." In XI МЕЖДУНАРОДНАЯ КОНФЕРЕНЦИЯ МОЛОДЫХ УЧЕНЫХ: БИОИНФОРМАТИКОВ, БИОТЕХНОЛОГОВ, БИОФИЗИКОВ, ВИРУСОЛОГОВ, МОЛЕКУЛЯРНЫХ БИОЛОГОВ И СПЕЦИАЛИСТОВ ФУНДАМЕНТАЛЬНОЙ МЕДИЦИНЫ. IPC NSU, 2024. https://doi.org/10.25205/978-5-4437-1691-6-207.

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Non-polio enteroviruses obtained in 2023 from patients with meningitis were studied. Virus types identified: CVB5, CVB4, E6, E7, E11, E18, E30; for the most frequently occurring ones (CVB5, E6, E30), phylogenetic analysis was carried out.
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Erkenbrack, Eric M., and Jeffrey R. Thompson. "CELLS, FOSSILS, AND EMBRYOS: USING PHYLOGENETIC COMPARATIVE METHODS TO UNDERSTAND HOW SPECIALIZED CELL TYPES HAVE CHANGED IN DEEP TIME." In GSA Annual Meeting in Indianapolis, Indiana, USA - 2018. Geological Society of America, 2018. http://dx.doi.org/10.1130/abs/2018am-324530.

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Andriani, Tri, and Mohammad Isa Irawan. "Application of unweighted pair group methods with arithmetic average (UPGMA) for identification of kinship types and spreading of ebola virus through establishment of phylogenetic tree." In INTERNATIONAL CONFERENCE ON MATHEMATICS: PURE, APPLIED AND COMPUTATION: Empowering Engineering using Mathematics. Author(s), 2017. http://dx.doi.org/10.1063/1.4994467.

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Forghani, Majid Ali, Artyom L. Firstkov, Pavel Alexandrovich Vasev, and Edward S. Ramsay. "Visualization of the Evolutionary Trajectory: Application of Reduced Amino Acid Alphabets and Word2Vec Embedding." In 32nd International Conference on Computer Graphics and Vision. Keldysh Institute of Applied Mathematics, 2022. http://dx.doi.org/10.20948/graphicon-2022-275-287.

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Analysis of viral evolution is a key element of epidemiological surveillance and control. One of the fundamental tools which is widely used to illustrate evolutionary history is the phylogenetic tree. Recently, we have proposed an alternative visualization for the phylogenetic tree using the evolutionary trajectory of its taxa. An evolutionary trajectory is a path starting from a taxon and ending at the root of the tree. In this paper, we propose an embedding of tree nodes by encoding their genetic sequence using a reduced amino acid alphabet and employing the Word2Vec framework. The suggested
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Abaeva, M. R., A. U. Isabek, A. M. Melisbek, et al. "IDENTIFICATION OF COXIELLA BURNETII USING SEQUENCING AND PHYLOGENETIC ANALYSIS OF THE 16S RRNA GENE." In XI МЕЖДУНАРОДНАЯ КОНФЕРЕНЦИЯ МОЛОДЫХ УЧЕНЫХ: БИОИНФОРМАТИКОВ, БИОТЕХНОЛОГОВ, БИОФИЗИКОВ, ВИРУСОЛОГОВ, МОЛЕКУЛЯРНЫХ БИОЛОГОВ И СПЕЦИАЛИСТОВ ФУНДАМЕНТАЛЬНОЙ МЕДИЦИНЫ. IPC NSU, 2024. https://doi.org/10.25205/978-5-4437-1691-6-216.

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The 16S rRNA gene carries both conservative and variable regions of the nucleotide sequence, which allows it to be used for both genus and species typing of microorganisms. Using the sequencing method and phylogenetic analysis of the 16S rRNA gene, Coxiella burnetii was identified in the body of a tick from the Turkestan region of the Republic of Kazakhstan. The results of the phylogenetic analysis of the 16S rRNA gene showed that the causative agent of Q fever Coxiella burnetii was present in the sample isolated from a tick from the Turkestan region in 2023. Molecular typing of the Coxiella b
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Mansour, O., D. M. Danilenko, and A. B. Komissarov. "DEVELOPMENT OF PRIMER PANEL FOR AMPLICON SEQUENCING OF HUMAN PARAINFLUENZA VIRUS TYPE 3." In XI МЕЖДУНАРОДНАЯ КОНФЕРЕНЦИЯ МОЛОДЫХ УЧЕНЫХ: БИОИНФОРМАТИКОВ, БИОТЕХНОЛОГОВ, БИОФИЗИКОВ, ВИРУСОЛОГОВ, МОЛЕКУЛЯРНЫХ БИОЛОГОВ И СПЕЦИАЛИСТОВ ФУНДАМЕНТАЛЬНОЙ МЕДИЦИНЫ. IPC NSU, 2024. https://doi.org/10.25205/978-5-4437-1691-6-173.

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Human parainfluenza viruses (hPIVs) are prominent etiological causes of acute respiratory tract infections. Genomic surveillance of hPIVs is not carried out in Russia. To date, there are no whole sequence data available that would allow for detailed epidemiological and phylogenetic analysis of circulating strains. This research aimed to develop primer panels for sequencing the whole viral genome of hPIV3 and describe the genetic diversity of these viruses.
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Bandeira, Larissa Melo, Ana Rita Motta-Castro, Marco Puga, et al. "Human T-cell leukemia virus type 1 infection among Japanese immigrants and their descendants living in Southeast Brazil: a call for preventive and control responses." In XIII Congresso da Sociedade Brasileira de DST - IX Congresso Brasileiro de AIDS - IV Congresso Latino Americano de IST/HIV/AIDS. Zeppelini Editorial e Comunicação, 2021. http://dx.doi.org/10.5327/dst-2177-8264-202133p012.

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Introduction: Human T-cell leukemia virus type 1 (HTLV-1) has worldwide distribution and is considered endemic in southwestern Japan. HTLV-1 infection has been associated with adult T-cell leukemia/lymphoma (ATL) and HTLV-1-associated myelopathy/tropical spastic paraparesis (HAM/TSP) besides other diseases. Objective: This cross-sectional study aimed to investigate the prevalence, risk factors, and molecular characterization of HTLV-1, among the world´s largest population of Japanese immigrants and their descendants outside Japan, in São Paulo, Southeast Brazil, as well as to analyze the phylo
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Aleev, Vladislav S., and Elena G. Plotnikova. "GENETIC AND ECOLOGICAL-PHYSIOLOGICAL CHARACTERISTICS OF BACTERIA OF THE GENUS SALINISPHAERA (CLASS GAMMAPROTEOBACTERIA) ISOLATED FROM THE VERKHNEKAMSKY SALT MINER." In Фундаментальные и прикладные исследования в биологии и экологии. Пермский государственный национальный исследовательский университет, 2021. http://dx.doi.org/10.17072/fpibe-2021-4-7.

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5 strains of halophilic bacteria were isolated from clay deposits of brine-diverting workings and brine tanks of the mine of the Verkhnekamskoye salt deposit (Solikamsk, Perm Territory). Because of phylogenetic analysis based on a comparison of the 16S rRNA gene sequences, it was found that the isolated cultures are members of the Salinisphaeraceae family. Three halophilic strains SHV2, RV14, and SWV1 had a similarity with the closest type strain of the Salinisphaera hydrothermalis species at the level of 95.94-96.62% (16S rRNA gene), which indicates that these strains belong to a new taxon. A
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"Evolution of the YUCCA protein family: phylogenetic relationships between the YUCCA and Type IIb FMO families." In Bioinformatics of Genome Regulation and Structure/Systems Biology (BGRS/SB-2022) :. Institute of Cytology and Genetics, the Siberian Branch of the Russian Academy of Sciences, 2022. http://dx.doi.org/10.18699/sbb-2022-099.

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Коротин, А. В., and Ю. В. Сазонова. "BIOINFORMATICAL ANALYSIS OF THE GE GENE FRAGMENT OF THE AUJESZKY DISEASE VIRUS IN ORDER TO DETERMINE THE PHYLOGENETIC RELATIONS OF THE NUCLEOTIDE SEQUENCES OF THE ANALYZED VIRUS ISOLATES." In Биотехнология в растениеводстве, животноводстве и сельскохозяйственной микробиологии. Crossref, 2021. http://dx.doi.org/10.48397/arriab.2021.21.xxi.004.

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Болезнь Ауески - это заболевание, которое оказывает значительное влияние на свиноводческую отрасль. Это заболевание вызвано Suid Herpesvirus 1 (SuHV-1), который является двухцепочечным ДНК-вирусом, который принадлежит к семейству Herpesviridae и подсемейству Alphaherpesvirinae и демонстрирует медленные темпы генетической эволюции. Филогенетические деревья вариабельного гликопротеина (gE) (US8), компонента оболочки вириона, мембранного белка типа I, широко используются в исследованиях для классификации вируса болезни Ауески. Aujeszky's disease is a disease that has a significant impact on the s
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Reports on the topic "Phylogenetic types"

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Michel Jr., Frederick C., Harry A. J. Hoitink, Yitzhak Hadar, and Dror Minz. Microbial Communities Active in Soil-Induced Systemic Plant Disease Resistance. United States Department of Agriculture, 2005. http://dx.doi.org/10.32747/2005.7586476.bard.

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Induced Systemic Resistance (ISR) is a highly variable property that can be induced by compost amendment of potting media and soils. For example, previous studies showed that only 1 of 79 potting mixes prepared with different batches of mature composts produced from several different types of solid wastes were able to suppress the severity of bacterial leaf spot of radish caused by Xanthomonas campestris pv. armoraciae compared with disease on plants produced in a nonamended sphagnum peat mix. In this project, microbial consortia in the rhizosphere of plants grown in ISR-active compost-amended
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Perl-Treves, Rafael, M. Kyle, and Esra Galun. Development and Application of a Molecular Genetic Map for Melon (Cucumis melo). United States Department of Agriculture, 1993. http://dx.doi.org/10.32747/1993.7568094.bard.

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This project has generated a systematic survey of DNA polymorphism in Cucumis melo. An RFLP and RAPD survey of the major cultivar groups and botanical varieties of this species has been conducted, with the purpose of assessing the degree of molecular variation and phylogenetic relationships within the melon germplasm and, at the same time, develop sets of markets suitable for mapping the melon genome. Additional activities regarding variation in the melon germplasm in fruit traits and regeneration ability have been initiated as well. The necessary populations required for the development of a
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Vakharia, Vikram, Shoshana Arad, Yonathan Zohar, Yacob Weinstein, Shamila Yusuff, and Arun Ammayappan. Development of Fish Edible Vaccines on the Yeast and Redmicroalgae Platforms. United States Department of Agriculture, 2013. http://dx.doi.org/10.32747/2013.7699839.bard.

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Betanodaviruses are causative agents of viral nervous necrosis (VNN), a devastating disease of cultured marine fish worldwide. Betanodavirus (BTN) genome is composed of two single-stranded, positive-sense RNA molecules. The larger genomic segment, RNA1 (3.1 kb), encodes the RNA-dependent RNA polymerase, while the smaller genomic segment, RNA 2 (1.4kb), encodes the coat protein. This structural protein is the host-protective antigen of VNN which assembles to form virus-like particles (VLPs). BTNs are classified into four genotypes, designated red-spotted grouper nervous necrosis virus (RGNNV),
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Michelmore, Richard, Eviatar Nevo, Abraham Korol, and Tzion Fahima. Genetic Diversity at Resistance Gene Clusters in Wild Populations of Lactuca. United States Department of Agriculture, 2000. http://dx.doi.org/10.32747/2000.7573075.bard.

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Genetic resistance is often the least expensive, most effective, and ecologically-sound method of disease control. It is becoming apparent that plant genomes contain large numbers of disease resistance genes. However, the numbers of different resistance specificities within a genepool and the genetic mechanisms generating diversity are poorly understood. Our objectives were to characterize diversity in clusters of resistance genes in wild progenitors of cultivated lettuce in Israel and California in comparison to diversity within cultivated lettuce, and to determine the extent of gene flow, re
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Gelb, Jr., Jack, Yoram Weisman, Brian Ladman, and Rosie Meir. Identification of Avian Infectious Brochitis Virus Variant Serotypes and Subtypes by PCR Product Cycle Sequencing for the Rational Selection of Effective Vaccines. United States Department of Agriculture, 2003. http://dx.doi.org/10.32747/2003.7586470.bard.

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Objectives 1. Determine the serotypic identities of 40 recent IBV isolates from commercial chickens raised in the USA and Israel. 2. Sequence all IBV field isolates using PCR product cycle sequencing and analyze their S 1 sequence to detennine their homology to other strains in the Genbank and EMBL databases. 3. Select vaccinal strains with the highest S 1 sequence homology to the field isolates and perform challenge of immunity studies in chickens in laboratory trials to detennine level of protection afforded by the vaccines. Background Infectious bronchitis (IB) is a common, economically imp
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